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Volumn 42, Issue 49, 2003, Pages 14476-14482

RP4 Repressor Protein KorB Binds to the Major Groove of the Operator DNA: A Raman Study

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CHEMICAL BONDS; DIMERIZATION; DNA; DNA SEQUENCES; GENES; RAMAN SPECTROSCOPY;

EID: 0346220018     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi034723h     Document Type: Article
Times cited : (12)

References (32)
  • 2
    • 0037040226 scopus 로고    scopus 로고
    • An Src homology 3-like domain is responsible for dimerization of the repressor protein KorB encoded by the promiscuous IncP plasmid RP4
    • Delbrück, H., Ziegelin, G., Lanka, E., and Heinemann, U. (2002) An Src homology 3-like domain is responsible for dimerization of the repressor protein KorB encoded by the promiscuous IncP plasmid RP4, J. Biol. Chem. 277, 4191-4198.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4191-4198
    • Delbrück, H.1    Ziegelin, G.2    Lanka, E.3    Heinemann, U.4
  • 3
    • 0027970969 scopus 로고
    • KorA protein of promiscuous plasmid RK2 controls a transcriptional switch between divergent operons for plasmid replication and conjugative transfer
    • Jagura-Burdzy, G., and Thomas, C. M. (1994) KorA protein of promiscuous plasmid RK2 controls a transcriptional switch between divergent operons for plasmid replication and conjugative transfer, Proc. Natl. Acad. Sci. U.S.A, 91, 10571-10575.
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 10571-10575
    • Jagura-Burdzy, G.1    Thomas, C.M.2
  • 4
    • 0031556953 scopus 로고    scopus 로고
    • Dissection of the switch between genes for replication and transfer of promiscuous plasmid RK2: Basis of the dominance of trfAp over trbAp and specificity for KorA in controlling the switch
    • Jagura-Burdzy, G., and Thomas. C. M. (1997) Dissection of the switch between genes for replication and transfer of promiscuous plasmid RK2: basis of the dominance of trfAp over trbAp and specificity for KorA in controlling the switch, J. Mol. Biol. 265, 507-518.
    • (1997) J. Mol. Biol. , vol.265 , pp. 507-518
    • Jagura-Burdzy, G.1    Thomas, C.M.2
  • 5
    • 0026547804 scopus 로고
    • Conjugative transfer functions of broadhost-range plasmid RK2 are co-regulated with vegetative replication
    • Motallebi-Veshareh, M., Balzer, D., Lanka, E., Jagura-Burdzy, G., and Thomas, C. M. (1992) Conjugative transfer functions of broadhost-range plasmid RK2 are co-regulated with vegetative replication. Mol. Microbiol. 6, 907-920.
    • (1992) Mol. Microbiol. , vol.6 , pp. 907-920
    • Motallebi-Veshareh, M.1    Balzer, D.2    Lanka, E.3    Jagura-Burdzy, G.4    Thomas, C.M.5
  • 6
    • 0028037220 scopus 로고
    • Regulation of transfer genes of promiscuous IncP alpha plasmid RK2: Repression of Tra1 region transcription both by relaxosome proteins and by the Tra2 regulator TrbA
    • Zatyka, M. Jagura-Burdzy, G., and Thomas, C. M. (1994) Regulation of transfer genes of promiscuous IncP alpha plasmid RK2: repression of Tra1 region transcription both by relaxosome proteins and by the Tra2 regulator TrbA, Microbiology 140, 2981-2990.
    • (1994) Microbiology , vol.140 , pp. 2981-2990
    • Zatyka, M.1    Jagura-Burdzy, G.2    Thomas, C.M.3
  • 7
    • 0030720270 scopus 로고    scopus 로고
    • Transcriptional and translational control of the genes for the mating pair formation apparatus of promiscuous incP plasmids
    • Zatyka, M., Jagura-Burdzy, G., and Thomas, C. M. (1997) Transcriptional and translational control of the genes for the mating pair formation apparatus of promiscuous incP plasmids, J. Bacteriol. 179, 7201-7209.
    • (1997) J. Bacteriol. , vol.179 , pp. 7201-7209
    • Zatyka, M.1    Jagura-Burdzy, G.2    Thomas, C.M.3
  • 8
    • 0030008710 scopus 로고    scopus 로고
    • P1 plasmid partition: A mutational analysis of ParB
    • Łobocka, M., and Yarmolinsky, M. (1996) P1 plasmid partition: a mutational analysis of ParB, J. Mol. Biol. 259, 366-382.
    • (1996) J. Mol. Biol. , vol.259 , pp. 366-382
    • Łobocka, M.1    Yarmolinsky, M.2
  • 9
    • 0025149275 scopus 로고
    • A family of ATPases involved in active partitioning of diverse bacterial plasmids
    • Motallebi-Veshareh, M., Rouch, D., and Thomas, C. M. (1990) A family of ATPases involved in active partitioning of diverse bacterial plasmids, Mol. Microbiol. 4, 1455-1463.
    • (1990) Mol. Microbiol. , vol.4 , pp. 1455-1463
    • Motallebi-Veshareh, M.1    Rouch, D.2    Thomas, C.M.3
  • 10
    • 0026528758 scopus 로고
    • Active partitioning of bacterial plasmids
    • Williams, D. R., and Thomas, C. M. (1992) Active partitioning of bacterial plasmids, J. Gen. Microbiol. 138, 1-16.
    • (1992) J. Gen. Microbiol. , vol.138 , pp. 1-16
    • Williams, D.R.1    Thomas, C.M.2
  • 12
    • 0026552342 scopus 로고
    • KorB protein of promiscuous plasmid RP4 recognizes inverted sequence repetitions in regions essential for conjugative plasmid transfer
    • Balzer, D., Ziegelin, G., Pansegrau, W., Kruft, V., and Lanka, E. (1992) KorB protein of promiscuous plasmid RP4 recognizes inverted sequence repetitions in regions essential for conjugative plasmid transfer, Nucleic Acids Res. 20, 1851-1858.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1851-1858
    • Balzer, D.1    Ziegelin, G.2    Pansegrau, W.3    Kruft, V.4    Lanka, E.5
  • 14
    • 0030741756 scopus 로고    scopus 로고
    • Divergence and conservation of the partitioning and global regulation functions in the central control region of the IncP plasmids RK2 and R751
    • Macartney, D. P., Williams, D. R., Stafford, T., and Thomas, C. M. (1997) Divergence and conservation of the partitioning and global regulation functions in the central control region of the IncP plasmids RK2 and R751, Microbiology 143, 2167-2177.
    • (1997) Microbiology , vol.143 , pp. 2167-2177
    • Macartney, D.P.1    Williams, D.R.2    Stafford, T.3    Thomas, C.M.4
  • 15
    • 0027229957 scopus 로고
    • Structure, function, and regulation of the kilB locus of promiscuous plasmid RK2
    • Thomson, V. J., Jovanovic, O. S., Pohlman, R. F., Chang, C. H., and Figurski, D. H. (1993) Structure, function, and regulation of the kilB locus of promiscuous plasmid RK2, J. Bacteriol. 175, 2423-2435.
    • (1993) J. Bacteriol. , vol.175 , pp. 2423-2435
    • Thomson, V.J.1    Jovanovic, O.S.2    Pohlman, R.F.3    Chang, C.H.4    Figurski, D.H.5
  • 17
    • 0001854341 scopus 로고
    • Raman spectroscopy of nucleic acids and their complexes
    • Thomas, G. J., Jr., and Tsuboi, M. (1993) Raman spectroscopy of nucleic acids and their complexes, Adv. Biophys. Chem. 3, 1-70.
    • (1993) Adv. Biophys. Chem. , vol.3 , pp. 1-70
    • Thomas Jr., G.J.1    Tsuboi, M.2
  • 20
    • 0031982525 scopus 로고    scopus 로고
    • Interaction of Tet repressor with operator DNA and with tetracycline studied by infrared and Raman spectroscopy
    • Krafft, C., Hinrichs, W., Orth, P., Saenger, W., and Welfle, H. (1998) Interaction of Tet repressor with operator DNA and with tetracycline studied by infrared and Raman spectroscopy, Biophys. J, 74, 63-71.
    • (1998) Biophys. J. , vol.74 , pp. 63-71
    • Krafft, C.1    Hinrichs, W.2    Orth, P.3    Saenger, W.4    Welfle, H.5
  • 21
    • 0033616633 scopus 로고    scopus 로고
    • Raman markers of nonaromatic side chains in an α-helix assembly: Ala, Asp, Glu, Gly, Ile, Leu, Lys, Ser, and Val residues of phage fd subunits
    • Overman, S. A., and Thomas, G. J., Jr. (1999) Raman markers of nonaromatic side chains in an α-helix assembly: Ala, Asp, Glu, Gly, Ile, Leu, Lys, Ser, and Val residues of phage fd subunits, Biochemistry 38, 4018-4027.
    • (1999) Biochemistry , vol.38 , pp. 4018-4027
    • Overman, S.A.1    Thomas Jr., G.J.2
  • 22
    • 0028953032 scopus 로고
    • Raman spectroscopy of DNA and proteins
    • Peticolas, W. L. (1995) Raman spectroscopy of DNA and proteins, Methods Enzymol. 246, 389-416.
    • (1995) Methods Enzymol. , vol.246 , pp. 389-416
    • Peticolas, W.L.1
  • 24
    • 0024284778 scopus 로고
    • Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen deuterium exchange kinetics
    • Miura, T., Takeuchi, H., and Harada, I. (1988) Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen deuterium exchange kinetics, Biochemistry 27, 88-94.
    • (1988) Biochemistry , vol.27 , pp. 88-94
    • Miura, T.1    Takeuchi, H.2    Harada, I.3
  • 25
    • 84988158466 scopus 로고
    • Tryptophan Raman bands sensitive to hydrogen bonding and side-chain conformation
    • Miura, T., Takeuchi, H., and Harada, I. (1989) Tryptophan Raman bands sensitive to hydrogen bonding and side-chain conformation, J. Raman Spectrosc. 20, 667-671.
    • (1989) J. Raman Spectrosc. , vol.20 , pp. 667-671
    • Miura, T.1    Takeuchi, H.2    Harada, I.3
  • 26
    • 0034711711 scopus 로고    scopus 로고
    • Protein-directed DNA structure. I. Raman spectroscopy of a high-mobility-group box with application to human sex reversal
    • Benevides, J. M., Chan, G., Lu, X.-J., Olson, W. K., Weiss, M. A., and Thomas, G. J., Jr. (2000) Protein-directed DNA structure. I. Raman spectroscopy of a high-mobility-group box with application to human sex reversal, Biochemistry 39, 537-547.
    • (2000) Biochemistry , vol.39 , pp. 537-547
    • Benevides, J.M.1    Chan, G.2    Lu, X.-J.3    Olson, W.K.4    Weiss, M.A.5    Thomas Jr., G.J.6
  • 27
    • 0028037859 scopus 로고
    • Secondary structure and interaction of phage D108 Ner repressor with a 61-base-pair operator: Evidence for altered protein and DNA structures in the complex
    • Benevides, J. M., Kukolj, G., Autexier, C., Aubrey, K. L., DuBow, M. S., and Thomas, G. J., Jr. (1994) Secondary structure and interaction of phage D108 Ner repressor with a 61-base-pair operator: evidence for altered protein and DNA structures in the complex, Biochemistry 33, 10701-10710.
    • (1994) Biochemistry , vol.33 , pp. 10701-10710
    • Benevides, J.M.1    Kukolj, G.2    Autexier, C.3    Aubrey, K.L.4    DuBow, M.S.5    Thomas Jr., G.J.6
  • 28
    • 0025823652 scopus 로고
    • Design of the helix-turn-helix motif: Nonlocal effects of quaternary structure in DNA recognition investigated by laser Raman spectroscopy
    • Benevides, J. M., Weiss, M. A., and Thomas, G. J., Jr. (1991) Design of the helix-turn-helix motif: nonlocal effects of quaternary structure in DNA recognition investigated by laser Raman spectroscopy, Biochemistry 30, 4381-4388.
    • (1991) Biochemistry , vol.30 , pp. 4381-4388
    • Benevides, J.M.1    Weiss, M.A.2    Thomas Jr., G.J.3
  • 29
    • 0028361125 scopus 로고
    • An altered specificity mutation in the λ repressor induces global reorganization of the protein-DNA interface
    • Benevides, J. M., Weiss, M. A., and Thomas, G. J., Jr. (1994) An altered specificity mutation in the λ repressor induces global reorganization of the protein-DNA interface, J. Biol. Chem. 269, 10869-10878.
    • (1994) J. Biol. Chem. , vol.269 , pp. 10869-10878
    • Benevides, J.M.1    Weiss, M.A.2    Thomas Jr., G.J.3
  • 30
    • 0032722226 scopus 로고    scopus 로고
    • Dependence of the Raman signature of genomic B-DNA on nucleotide base sequence
    • Deng, H., Bloomfield, V. A., Benevides, J. M., and Thomas, G. J., Jr. (1999) Dependence of the Raman signature of genomic B-DNA on nucleotide base sequence, Biopolymers 50, 656-666.
    • (1999) Biopolymers , vol.50 , pp. 656-666
    • Deng, H.1    Bloomfield, V.A.2    Benevides, J.M.3    Thomas Jr., G.J.4
  • 31
    • 0038558329 scopus 로고    scopus 로고
    • Raman spectroscopy of regulatory protein Omega from Streptococcus pyogenes plasmid pSM 19035 and complexes with operator DNA
    • Dostál, L., Misselwitz, R., Laettig, S., Alonso, J. C., and Welfle, H. (2003) Raman spectroscopy of regulatory protein Omega from Streptococcus pyogenes plasmid pSM 19035 and complexes with operator DNA, Spectroscopy 17, 435-445.
    • (2003) Spectroscopy , vol.17 , pp. 435-445
    • Dostál, L.1    Misselwitz, R.2    Laettig, S.3    Alonso, J.C.4    Welfle, H.5
  • 32
    • 0001144723 scopus 로고    scopus 로고
    • Temperature dependence of the Raman spectrum of DNA. Part I: Raman signatures of premelting and melting transitions of poly(dA-dT)· poly(dA-dT)
    • Movileanu, L., Benevides, J. M., and Thomas, G. J., Jr. (1999) Temperature dependence of the Raman spectrum of DNA. Part I: Raman signatures of premelting and melting transitions of poly(dA-dT)·poly(dA-dT), J. Raman Spectrosc. 30, 637-649.
    • (1999) J. Raman Spectrosc. , vol.30 , pp. 637-649
    • Movileanu, L.1    Benevides, J.M.2    Thomas Jr., G.J.3


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