β-Propeller crystal structure of Psathyrella velutina lectin: An integrin-like fungal protein interacting with monosaccharides and calcium

Journal of Molecular Biology

Volumn 357, Issue 5, 2006, Pages 1575-1591

  Cioci, Gianluca ^a   Mitchell, Edward P ^b   Chazalet, Valerie ^a   Debray, Henri ^c   Oscarson, Stefan ^d   Lahmann, Martina ^d   Gautier, Catherine ^a   Breton, Christelle ^a   Perez, Serge ^a   Imberty, Anne ^a  

^a CENTRE DE RECHERCHES SUR LES MACROMOLÉCULES VÉGÉTALES CERMAV CNRS   (France)

^b EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^c UNIVERSITÉ DES SCIENCES ET TECHNOLOGIES DE LILLE   (France)

^d STOCKHOLM UNIVERSITY   (Sweden)

Author keywords

Carbohydrate; Crystallography; Lectin; Microcalorimetry; propeller

Indexed keywords

AMINO ACID; CALCIUM; CALCIUM ION; CARBOHYDRATE; CELL ADHESION MOLECULE; FUNGAL PROTEIN; GLYCAN DERIVATIVE; HISTIDINE; HYDROXYL GROUP; INTEGRIN; LECTIN; MONOMER; MONOSACCHARIDE; N ACETYLGLUCOSAMINE; N ACETYLNEURAMINIC ACID; SELENIUM DERIVATIVE; SIALIC ACID; TYROSINE;

AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; BINDING AFFINITY; CALCIUM BINDING; CRYSTAL STRUCTURE; FUNGAL GENE; GENE SEQUENCE; HYDROGEN BOND; HYDROPHOBICITY; ISOTHERMAL TITRATION CALORIMETRY; METAL BINDING; MOLECULAR MIMICRY; MUSHROOM; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; THERMODYNAMICS; X RAY CRYSTALLOGRAPHY;

BACTERIA (MICROORGANISMS); BASIDIOMYCOTA; LACRYMARIA VELUTINA;

EID: 33645045856     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.01.066     Document Type: Article

References (59)

1. H. Lis, and N. Sharon Lectins: carbohydrate-specific proteins that mediate cellular recognition Chem. Rev. 98 1998 637 674
2. J. Guillot, and G. Konska Lectins in higher fungi Biochem. System. Ecol. 25 1997 203 230
3. B. Nordbring-Herz, and I. Chet Fungal lectins and agglutinins D. Mirelman Microbial Lectins and Agglutinin: Properties and Biological Activity 1986 Wiley New York 393 408
4. R.T. Pemberton Agglutinins (lectins) from some British higher fungi Mycol. Res. 98 1994 277 290
5. H. Wang, T.B. Ng, and V.E.C. Oooi Lectins from mushrooms Mycol. Res. 102 1998 897 906
6. A. Imberty, E.P. Mitchell, and M. Wimmerová Structural basis for high affinity glycan recognition by bacterial and fungal lectins Curr. Opin. Struct. Biol. 15 2005 525 534
7. M. Wimmerova, E. Mitchell, J.F. Sanchez, C. Gautier, and A. Imberty Crystal structure of fungal lectin: six-bladed β-propeller fold and novel recognition mode for Aleuria aurantia lectin J. Biol. Chem. 278 2003 27059 27067
8. P. Paaventham, J.S. Joseph, S.V. Seow, S. Vaday, H. Robinson, K.Y. Chua, and A.R. Kolatkar A 1.7 Å structure of Fve, a member of the new fungal immunomodulatory protein family J. Mol. Biol. 332 2003 461 470
9. C. Birck, L. Damian, C. Marty-Detraves, A. Lougarre, C.K.P. Schulze-Brieze, and D. Fournier A new lectin family with structure similarity to actinoporins revealed by the crystal structure of Xerocomus chrysenteron lectin XCL J. Mol. Biol. 344 2004 1409 1420
10. M.E. Carrizo, S. Capaldi, M. Perduca, F.J. Irazoqui, G.A. Nores, and H.L. Monaco The antineoplastic lectin of the common edible mushroom (Agaricus bisporus) has two binding sites, each specific for a different configuration at a single epimeric hydroxyl J. Biol. Chem. 280 2005 10614 10623
11. P.J. Walser, P.W. Haebel, M. Künzler, D. Sargent, U. Kües, M. Aebi, and U. Ban Structure and functional analysis of the fungal galectin CGL2 Structure 12 2004 689 702
12. M. Ban, H.J. Yoon, E. Demirkan, S. Utsumi, B. Mikami, and F. Yagi Structural basis of a fungal galectin from Agrocybe cylindracea for recognizing sialoconjugate J. Mol. Biol. 351 2005 695 706
13. J.M. Mancheno, H. Tateno, I.J. Goldstein, M. Martinez-Ripoll, and J.A. Hermoso Structural analysis of the Laetiporus sulphureus hemolytic pore-forming lectin in complex with sugars J. Biol. Chem. 280 2005 17251 17259
14. N. Kochibe, and K.L. Matta Purification and properties of a N-acetylglucosamine-specific lectin from Psathyrella velutina mushroom J. Biol. Chem. 264 1989 173 177
15. T. Endo, H. Ohbayashi, K. Kanazawa, N. Kochibe, and A. Kobata Carbohydrate binding specificity of immobilized Psathyrella velutina lectin J. Biol. Chem. 267 1992 707 713
16. R.B. Parekh, R.A. Dwek, B.J. Sutton, D.L. Fernandes, A. Leung, and D. Stanworth Assocation of rheumatoid arthritis and primary osteorarthritis with changes in the glysosylation pattern of total serum IgG Nature 316 1985 452 457
17. N. Tsuchiya, T. Endo, K. Matsuta, S. Yoshinoya, F. Takeuchi, and Y. Nagano Detection of glycosylation abnormality in rheumatoid IgG using N-acetylglucosamine-specific Psathyrella velutina lectin J. Immunol. 151 1993 1137 1146
18. M. Liljeblad, A. Lundblad, and P. Pahlsson Analysis of agalacto-IgG in rheumatoid arthritis using surface plasmon resonance Glycoconj. J. 17 2000 323 329
19. J.S. Moore, X. Wu, R. Kulhavy, M. Tomana, J. Novak, and Z. Moldoveanu Increased levels of galactose-deficient IgG in sera of HIV-1-infected individuals AIDS 19 2005 381 389
20. H. Ueda, K. Kojima, T. Saitoh, and H. Ogawa Interaction of a lectin from Psathyrella velutina mushroom with N-acetylneuraminic acid FEBS Letters 448 1999 75 80
21. H. Ueda, H. Matsumoto, N. Takahashi, and H. Ogawa Psathyrella velutina mushroom lectin exhibits high affinity toward sialoglycoproteins possessing terminal N-acetylneuraminic acid α2-3-linked to penultimate galacose residues of trisialyl N-glycans J. Biol. Chem. 277 2002 24916 24925
22. H. Ueda, T. Saitoh, K. Kojima, and H. Ogawa Multi-specificity of a Psathyrella velutina mushroom lectin: heparin/pectin binding occurs at a site different from the N-acetylglucosamine/N-acetylneuraminic acid-specific site J. Biochem. 126 1999 530 537
23. Asano, Y. & Kamoashi, T. (1998). Polypeptide of lectin and DNA coding the same, Patent number JP1998174588-A/1. SEIKAGAKU KOGYO CO LTD., Japan.
24. T.K. Dam, and C.F. Brewer Thermodynamic studies of lectin-carbohydrate interactions by isothermal titration calorimetry Chem. Rev. 102 2002 387 429
25. L. Buts, R. Loris, E. De Genst, S. Oscarson, M. Lahmann, and J. Messens Solving the phase problem for carbohydrate-binding proteins using selenium derivatives of their ligands: a case study involving the bacterial F17-G adhesin Acta Crystallog. sect. D 59 2003 1012 1015
26. Z. Jawad, and M. Paoli Novel sequences propel familiar folds Structure 10 2002 447 454
27. M. Fujihashi, D.H. Peapus, N. Kamiya, Y. Nagata, and K. Miki Crystal structure of fucose-specific lectin from Aleuria aurantia binding ligands at three of its five sugar recognition sites Biochemistry 42 2003 11093 11099
28. K. Amano, M. Fujihashi, A. Ando, K. Miki, and Y. Nagata Involvement of tyrosines at fucose-binding sites of Aleuria aurantia lectin: non-equal response to site-directed mutagenesis among five sites Biosci. Biotechnol. Biochem. 68 2004 841 847
29. C.S. Wright Structural comparison of the two distinct sugar binding sites in wheat germ agglutinin isolectin II J. Mol. Biol. 178 1984 91 104
30. C.S. Wright Location of the N-acetyl-D-neuraminic acid binding site in wheat germ agglutinin A crystallographic study at 2.8 Å resolution. J. Mol. Biol. 139 1980 53 60
31. C.S. Wright, and J. Jaeger Crystallographic refinement and structure analysis of the complex of wheat germ agglutinin with a bivalent sialoglycopeptide from glycophorin A J. Mol. Biol. 232 1993 620 638
32. J.N. Varghese, W.G. Laver, and P.M. Colman Structure of the influenza virus glycoprotein antigen neuraminidase at 2.9 Å resolution Nature 303 1983 35 40
33. A.B. Witarto, and K. Sode Increasing the hydrophobic interaction between terminal W-motifs enhances the stability of Salmonella typhimurium sialidase. A general strategy for the stabilization of beta-propeller protein fold Protein Eng. 14 2001 891 896
34. N. Kostlanová, E.P. Mitchell, H. Lortat-Jacob, S. Oscarson, M. Lahmann, and N. Gilboa-Garber The fucose-binding lectin from Ralstonia solanacearum: a new type of β-propeller architecture formed by oligomerisation and interacting with fucoside, fucosyllactose and plant xyloglucan J. Biol. Chem. 280 2005 27839 27849
35. H.G. Beisel, S. Kawabata, S. Iwanaga, R. Huber, and W. Bode Tachylectin-2: crystal structure of a specific GlcNAc/GalNAc-binding lectin involved in the innate immunity host defense of the Japanese horseshoe crab Tachypleus tridentatus EMBO J. 18 1999 2313 2322
36. F. Gallego del Sol, C. Nagano, B.S. Cavada, and J.J. Calvete The first crystal structure of a Mimosoideae lectin reveals a novel quaternary arrangement of a widespread domain J. Mol. Biol. 353 2005 574 583
37. J. Emsley, H.E. White, B.P. O'Hara, G. Oliva, N. Srinivasan, and I.J. Tickle Structure of pentameric human serum amyloid P component Nature 367 1994 338 345
38. J.R. Walker, B. Nagar, N.M. Young, T. Hirama, and J.M. Rini X-ray crystal structure of a galactose-specific C-type lectin possessing a novel decameric quaternary structure Biochemistry 43 2004 3783 3792
39. L. Cummings, L. Riley, L. Black, A. Souvorov, S. Resenchuk, I. Dondoshansky, and T. Tatusova Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes FEMS Microbiol. Letters 216 2002 133 138
40. Birren, B., Nusbaum, C., Abebe, A., Abouelleil, A., Adekoya, E., Ait-zahra, M., et al. (2003). The genome sequence of Coprinus cinereus. Whitehead Institute/MIT Center for Genome Research.
41. S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucl. Acids Res. 25 1997 3389 3402
42. N. Hulo, C.J. Sigrist, V. Le Saux, P.S. Langendijk-Genevaux, L. Bordoli, and A. Gattiker Recent improvements to the PROSITE database Nucl. Acids Res. 32 2004 D134 D137
43. Y.R. Kim, S.E. Lee, C.M. Kim, S.Y. Kim, E.K. Shin, and D.H. Shin Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients Infect. Immun. 71 2003 5461 5471
44. Beller, H. R., Chain, P. S., Letain, T. E., Chakicheria, A., Larimer, F. W., Richardson, P. M. et al. (2006). The genome sequence of the obligately chemolithoautotrophic facultatively anaerobic bacterium Thiobacillus denitrificans. J. Bacteriol. 188, 1473-1488.
45. Chapon, V. & Chanal, A. (2005). A new strategy to exploit environmental genes resources reveals the role of a eukaryotic-type topoisomerase in bacterial radioresistance. EMBL/GenBank/DDBJ databases. In the press.
46. L. Holm, and C. Sander Protein structure comparison by alignment of distance matrices J. Mol. Biol. 233 1993 123 138
47. R.O. Hynes Integrins: bidirectional, allosteric signaling machines Cell 110 2002 673 687
48. J.P. Xiong, T. Stehle, B. Diefenbach, R. Zhang, R. Dunker, and D.L. Scott Crystal structure of the extracellular segment of integrin alpha Vbeta3 Science 294 2001 339 345
49. T.A. Springer Folding of the N-terminal, ligand-binding region of integrin alpha-subunits into a beta-propeller domain Proc. Natl Acad. Sci. USA 94 1997 65 72
50. H. Ueda, N. Takahashi, and H. Ogawa Psathyrella velutina lectin as a specific probe for N-acetylneuraminic acid in glycoconjugates Methods Enzymol. 363 2003 77 90
51. P. Vretblad Purification of lectins by biospecific affinity chromatography Biochim. Biophys. Acta 434 1976 169 176
52. A.G.W. Leslie Recent changes to the MOSFLM package for processing film and image plate data Joint CCP4+ESF-EAMCB News letter on Protein Crystallography 26 1992
53. Collaborative Computational Project Number 4 The CCP4 suite: programs for protein crystallography Acta Crystallog. 1994 760 763
54. Y. Ogra, K. Ishiwata, H. Takayama, N. Aimi, and K.T. Suzuki Identification of a novel selenium metabolite, Se-methyl-N- acetylselenohexosamine, in rat urine by high-performance liquid chromatography-inductively coupled plasma mass spectrometry and electrospray ionization tandem mass spectrometry J. Chromatog. sect. B 767 2002 301 312
55. E. de La Fortelle, and G. Bricogne Maximum-likelihood heavy-atom parameter refinement for the multiple isomorphous replacement and multiwavelength anomalous diffraction methods Methods Enzymol. 276 1997 472 494
56. A. Perrakis, R. Morris, and V.S. Lamzin Automated protein model building combined with iterative structure refinement Nature Struct. Biol. 6 1999 458 463
57. G.N. Murshudov, A.A. Vagin, and E.J. Dodson Refinement of macromolecular structures by the maximum-likelihood method Acta Crystallog. sect. D 53 1997 240 255
58. T.A. Jones, J.Y. Zou, S.W. Cowan, and M. Kjeldgaard Improved methods for the building of protein models in electron density maps and the location of errors in these models Acta Crystallog. sect. A 47 1991 110 119
59. P. Kraulis Molscript: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallog. 24 1991 946 950