The hemoglobin genes of Drosophila

FEBS Journal

Volumn 273, Issue 3, 2006, Pages 468-480

  Burmester, Thorsten ^a   Storf, Joachim ^a   Hasenjäger, Anne ^a   Klawitter, Sabine ^a   Hankeln, Thomas ^a  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

Gene duplication; Globin; Insects; Oxygen; Phylogeny

Indexed keywords

AMINO ACID; HEME; HEMOGLOBIN; OXYGEN;

ARTICLE; BINDING SITE; DROSOPHILA; DROSOPHILA MELANOGASTER; DROSOPHILA SIMULANS; DROSOPHILA VIRILIS; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; GENE STRUCTURE; HEMOGLOBIN DETERMINATION; INTRON; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STRUCTURE ANALYSIS; TRACHEA; WESTERN BLOTTING;

AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; CONSERVED SEQUENCE; DROSOPHILA; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; GUANINE NUCLEOTIDE EXCHANGE FACTORS; HEMOGLOBINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

CHIRONOMIDAE; DIPTERA; DROSOPHILA ANANASSAE; DROSOPHILA ERECTA; DROSOPHILA GRIMSHAWI; DROSOPHILA MELANOGASTER; DROSOPHILA MOJAVENSIS; DROSOPHILA PSEUDOOBSCURA; DROSOPHILA SIMULANS; DROSOPHILA VIRILIS; DROSOPHILA YAKUBA; DROSOPHILIDAE; GASTEROPHILUS INTESTINALIS; HEXAPODA; INSECTA;

EID: 33644934382     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2005.05073.x     Document Type: Article

References (56)

1. Dickerson RE Geis I 1983 Hemoglobin: Structure, Function, Evolution, and Pathology Benjamin/Cummings Publishers Co Menlo Parkq5
2. Berg JM Tymoszko JL Stryer L 2002 Biochemistry W.H. Freeman and Co. New Yorkq6
3. Wittenberg JB 1992 Functions of cytoplasmatic hemoglobins and myohemerythrin Adv Comp Environ Physiol 13 60 85
4. Hardison RC 1996 A brief history of hemoglobins: plant, animal, protist, and bacteria Proc Natl Acad Sci USA 93 5675 5679
5. Weber RE Vinogradov SN 2001 Nonvertebrate hemoglobins: functions and molecular adaptations Physiol Rev 81 569 628
6. Vinogradov SN Hoogewijs D Bailly X Arredondo-Peter R Guertin M Gough J Dewilde S Moens L Vanfleteren JR 2005 Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life Proc Natl Acad Sci USA 102 11385 11389
7. Burmester T Hankeln T 2004 Neuroglobin: a respiratory protein of the nervous system News Phys Sci 19 110 113
8. Freitas TA Saito JA Hou S Alam M 2005 Globin-coupled sensors, protoglobins, and the last universal common ancestor J Inorg Biochem 99 23 33
9. Hankeln T Ebner B Fuchs C Gerlach F Haberkamp M Laufs TL Roesner A Schmidt M Weich B Wystub S Saaler-Reinhardt S Reuss S Bolognesi M De Sanctis D Marden MC Kiger L Moens L Dewilde S Nevo E Avivi A Weber RE Fago A Burmester T 2005 Neuroglobin and cytoglobin in search of their role in the vertebrate globin family J Inorg Biochem 99 110 119
10. Willmer P Stone G Johnston I 2000 Environmental Physiology of Animals Blackwell Oxford, UK
11. Hagner-Holler S Schoen A Erker W Marden JH Rupprecht R Decker H Burmester T 2004 A respiratory hemocyanin from an insect Proc Natl Acad Sci USA 101 871 874
12. Ewer RF 1942 On the function of hemoglobin in Chironomus J Exp Biol 18 197 205
13. Osmulski PA Leyko W 1985 Structure, function and physiological role of Chironomus hemoglobin Comp Biochem Physiol 85B 701 722
14. Keilin D Wang YL 1946 Haemoglobin of Gastrophilus larvae. Purification and propertie s Biochem J 40 855 866
15. Dewilde S Blaxter M Van Hauwaert ML Van Houte K Pesce A Griffon N Kiger L Marden MC Vermeire S Vanfleteren J Esmans E Moens L 1998 Structural, functional, and genetic characterization of Gastrophilus hemoglobin J Biol Chem 273 32467 32474
16. Burmester T Hankeln T 1999 A globin gene of Drosophila melanogaster Mol Biol Evol 16 1809 1811
17. Hankeln T Jaenicke V Kiger L Dewilde S Ungerechts G Schmidt M Urban J Marden MC Moens L Burmester T 2002 Characterization of Drosophila hemoglobin: Evidence for hemoglobin-mediated respiration in insects J Biol Chem 277 29012 29017
18. de Sanctis D Dewilde S Vonrhein C Pesce A Moens L Ascenzi P Hankeln T Burmester T Ponassi M Nardini M Bolognesi M 2005 Bis-histidyl heme hexacoordination, a key structural property in Drosophila melanogaster hemoglobin J Biol Chem 280 27222 27229
19. Altschul SF Madden TL Schäffer AA Zhang J Zhang Z Miller W Lipman DJ 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
20. Wenger RH Gassmann M 1997 Oxygen(es) and the hypoxia-inducible factor-1 Biol Chem 378 609 616
21. Semenza GL Jiang B-H Leung SW Passantino R Concordet J-P Maire P Giallongo A 1996 Hypoxia response elements in the aldolase A, enolase 1, and lactate dehydrogenase A gene promoters contain essential binding sites for hypoxia-inducible factor 1 J Biol Chem 271 32529 32537
22. Segarra C Lozovskaya ER Ribo G Aguade M Hartl DL 1995 P1 clones from Drosophila melanogaster as markers to study the chromosomal evolution of Muller's A element in two species of the obscura group of Drosophila Chromosoma 104 129 136
23. Richards S Liu Y Bettencourt BR Hradecky P Letovsky S Nielsen R Thornton K Hubisz MJ et al. 2005 Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution Genome Res 15 1 18
24. Tamura K Subramanian S Kumar S 2004 Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks Mol Biol Evol 21 36 44
25. Nei M Gojobori T 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol Biol Evol 3 418 426
26. Pearson WR 2000 Flexible sequence similarity searching with the FASTA3 program package Methods Mol Biol 132 185 219
27. Boguski MS Lowe TM Tolstoshev CM 1993 dbEST - database for 'expressed sequence tags' Nat Genet 4 332 333
28. Reinhardt A Hubbard T 1998 Using neural networks for prediction of the subcellular location of proteins Nucleic Acids Res 26 2230 2236
29. Adams MD Celniker SE Holt RA Evans CA Gocayne JD Amanatides PG Scherer SE Li PW et al. 2000 The genome sequence of Drosophila melanogaster Science 287 2185 2195
30. Rubin GM Yandell MD Wortman JR Gabor Miklos GL Nelson CR Hariharan IK Fortini ME Li PW et al. 2000 Comparative genomics of the eukaryotes Science 287 2204 2215
31. Hetz SK Bradley TJ 2005 Insects breathe discontinuously to avoid oxygen toxicity Nature 433 516 519
32. Burmester T 2005 A welcome shortage of breath Nature 433 471 472
33. Gorr TA Tomita T Wappner P Bunn HF 2004 Regulation of Drosophila hypoxia-inducible factor (HIF) activity in SL2 cells: identification of a hypoxia-induced variant isoform of the HIFalpha homolog gene similar J Biol Chem 279 36048 36058
34. Crews S 1998 Control of cell lineage-specific development and transcription by bHLH-PAS proteins Genes Dev 12 607 620
35. Seregelyes C Mustardy L Ayaydin F Sass L Kovacs L Endre G Lukacs N Kovacs I Vass I Kiss GB Horvath GV Dudits D 2000 Nuclear localization of a hypoxia-inducible novel non-symbiotic hemoglobin in cultured alfalfa cells FEBS Lett 482 125 130
36. Roesner A Fuchs C Hankeln T Burmester T 2005 A globin gene of ancient evolutionary origin in lower vertebrates: Evidence for two distinct globin families in animals Mol Biol Evol 22 12 20
37. Burmester T Massey HC Jr. Zakharkin SO Beneš H 1998 The evolution of hexamerins and the phylogeny of insects J Mol Evol 47 93 108
38. Wiegmann BM Yeates DK Thorne JL Kishino H 2003 Time flies, a new molecular time-scale for brachyceran fly evolution without a clock Syst Biol 52 745 756
39. Goodman M Braunitzer G Kleinschmidt T Aschauer H 1983 The analysis of a protein-polymorphism: evolution of monomeric and homodimeric haemoglobins (Erythrocruorins) of Chironomus Thummi Thummi Hoppe-Seyler Z Physiol Chem 364 205 217
40. Goodman M Pedwaydon J Czelusniak J Suzuki T Gotoh T Moens L Shishikura F Walz D Vinogradov S 1988 An evolutionary tree for invertebrate globin sequences J Mol Evol 27 236 249
41. Hankeln T Friedl H Ebersberger I Martin J Schmidt ER 1997 A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain Gene 205 151 160
42. Logsdon JM Stoltzfus A Doolittle WF 1998 Molecular evolution: Recent cases of spliceosomal intron gain? Curr Biol 8 R560 R563
43. Roy SW 2003 Recent evidence for the exon theory of genes Genetica 118 251 266
44. Nicholas KB Nicholas HB Jr. 1997 ) GeneDoc: analysis and visualization of genetic variation..
45. Schwartz S Elnitski L Li M Weirauch M Riemer C Smit A Green ED Hardison RC Miller W 2003 MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences Nucleic Acids Res 31 3518 3524
46. Schwartz S Zhang Z Frazer KA Smit A Riemer C Bouck J Gibbs R Hardison RC Miller W 2000 PipMaker - a web server for aligning two genomic DNA sequences Genome Res 10 577 586
47. Reese MG 2001 Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome Comput Chem 26 51 56
48. Sambrook J Russell DW 2001 ) Molecular Cloning: A Laboratory Manual, 3rd edn., Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York
49. Dayhoff MO Schwartz RM Orcutt BC 1978 A Model of Evolutionary Change in Proteins. In Atlas of Protein Sequence Structur Vol. 5 Dayhoff MO, ed.) Suppl. 3, pp. 345 352 National Biomedical Research Foundation Washington DC, USA
50. Felsenstein J 2004 phylip (Phylogeny Inference Package), Version 36 Department of Genetics, University of Washington Seattle, WA, USA
51. Ota T Nei M 1994 Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site Mol Biol Evol 11 613 619
52. Russo CA Takezaki N Nei M 1995 Molecular phylogeny and divergence times of drosophilid species Mol Biol Evol 12 391 404
53. Abascal F Zardoya R Posada D 2005 ProtTest: Selection of best-fit models of protein evolution Bioinformatics 21 2104 2105
54. Strimmer K von Haeseler A 1996 Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies Mol Biol Evol 13 964 969
55. Felsenstein J 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
56. Huelsenbeck JP Ronquist F 2001 mrbayes : Bayesian inference of phylogenetic trees Bioinformatics 17 754 755