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Volumn 22, Issue 1, 2005, Pages 12-20

A globin gene of ancient evolutionary origin in lower vertebrates: Evidence for two distinct globin families in animals

Author keywords

Gene duplication; Globin; Hemoglobin; Intron sliding; Neuroglobin

Indexed keywords

CYTOGLOBIN; GLOBIN; HEMOGLOBIN; HISTIDINE; MYOGLOBIN; NEUROGLOBIN; PHENYLALANINE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 10344243985     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh258     Document Type: Article
Times cited : (118)

References (51)
  • 2
    • 0037162885 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    • Aparicio, S., J. Chapman, E. Stupka et al. (41 co-authors). 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science. 297:1301-1310.
    • (2002) Science , vol.297 , pp. 1301-1310
    • Aparicio, S.1    Chapman, J.2    Stupka, E.3
  • 4
    • 3042727978 scopus 로고    scopus 로고
    • Neuroglobin: A respiratory protein of the nervous system
    • Burmester, T. and T. Hankeln. 2004. Neuroglobin: A respiratory protein of the nervous system. News Physiol. Sci. 19:110-113.
    • (2004) News Physiol. Sci. , vol.19 , pp. 110-113
    • Burmester, T.1    Hankeln, T.2
  • 5
    • 0036219963 scopus 로고    scopus 로고
    • Cytoglobin: A novel globin type ubiquitously expressed in vertebrate tissues
    • Burmester, T., B. Ebner, B. Weich, and T. Hankeln. 2002. Cytoglobin: a novel globin type ubiquitously expressed in vertebrate tissues. Mol. Biol. Evol. 19:416-421.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 416-421
    • Burmester, T.1    Ebner, B.2    Weich, B.3    Hankeln, T.4
  • 6
    • 0034726874 scopus 로고    scopus 로고
    • A vertebrate globin expressed in the brain
    • Burmester, T., B. Weich, S. Reinhardt, and T. Hankeln. 2000. A vertebrate globin expressed in the brain. Nature 407:520-523.
    • (2000) Nature , vol.407 , pp. 520-523
    • Burmester, T.1    Weich, B.2    Reinhardt, S.3    Hankeln, T.4
  • 7
    • 0018639079 scopus 로고
    • Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease
    • Chirgwin, J. M., A. E. Przybyla, R. J. MacDonald, and W. J. Rutter. 1979. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18:5294-5299.
    • (1979) Biochemistry , vol.18 , pp. 5294-5299
    • Chirgwin, J.M.1    Przybyla, A.E.2    MacDonald, R.J.3    Rutter, W.J.4
  • 8
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • Dayhoff, M. O., ed. National Biomedical Research Foundation, Washington, DC
    • Dayhoff, M. O., R. M. Schwartz, and B. C. Orcutt. 1978. A model of evolutionary change in proteins. Pp. 345-352 in Dayhoff, M. O., ed. Atlas of protein sequence structure, Vol. 5, Supplement 3. National Biomedical Research Foundation, Washington, DC.
    • (1978) Atlas of Protein Sequence Structure , vol.5 , Issue.3 SUPPL. , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 10
    • 0026495175 scopus 로고
    • Did the ancestral globin gene of plants and animals contain only two introns?
    • Dixon, B., and B. Pohajdak. 1992. Did the ancestral globin gene of plants and animals contain only two introns? TIBS 17:486-488.
    • (1992) TIBS , vol.17 , pp. 486-488
    • Dixon, B.1    Pohajdak, B.2
  • 11
    • 0042335879 scopus 로고    scopus 로고
    • Globin genes are present in dona intestinalis
    • Ebner, B., T. Burmester, and T. Hankeln. 2003. Globin genes are present in dona intestinalis. Mol. Biol. Evol. 20:1521-1525.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1521-1525
    • Ebner, B.1    Burmester, T.2    Hankeln, T.3
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 13
    • 0003437299 scopus 로고    scopus 로고
    • Distributed by the author, Department of Genetics, University of Washington, Seattle
    • _. 2004. PHYLIP (phylogeny inference package). Version 3.6b. Distributed by the author, Department of Genetics, University of Washington, Seattle.
    • (2004) PHYLIP (Phylogeny Inference Package). Version 3.6b
  • 19
    • 0031593151 scopus 로고    scopus 로고
    • A variable intron distribution in globin genes of Chironomus: Evidence for recent intron gain
    • Hankeln, T., H. Friedl, I. Ebersberger, J. Martin, and E. R. Schmidt. 1997. A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain. Gene 205:151-160.
    • (1997) Gene , vol.205 , pp. 151-160
    • Hankeln, T.1    Friedl, H.2    Ebersberger, I.3    Martin, J.4    Schmidt, E.R.5
  • 20
    • 0029893918 scopus 로고    scopus 로고
    • A brief history of hemoglobins: Plant, animal, protist, and bacteria
    • Hardison, R. C. 1996. A brief history of hemoglobins: plant, animal, protist, and bacteria. Proc. Natl. Acad. Sci. USA 93:5675-5679.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5675-5679
    • Hardison, R.C.1
  • 21
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 22
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck, J. P., F. Ronquist, R. Nielsen, and J. P. Bollback. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314.
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 23
    • 0035816696 scopus 로고    scopus 로고
    • Characterization of a stellate cell activation-associated protein (STAP) with peroxidase activity found in rat hepatic stellate cells
    • Kawada, N., D. B. Kristensen, K. Asahina, K. Nakatani, Y. Minamiyama, S. Seki, and K. Yoshizato. 2001. Characterization of a stellate cell activation-associated protein (STAP) with peroxidase activity found in rat hepatic stellate cells. J. Biol. Chem. 276:25318-25323.
    • (2001) J. Biol. Chem. , vol.276 , pp. 25318-25323
    • Kawada, N.1    Kristensen, D.B.2    Asahina, K.3    Nakatani, K.4    Minamiyama, Y.5    Seki, S.6    Yoshizato, K.7
  • 24
    • 0032478044 scopus 로고    scopus 로고
    • Primary structures of Arenicola marina isomyoglobins: Molecular basis for functional heterogeneity
    • Kleinschmidt, T., and R. E. Weber. 1998. Primary structures of Arenicola marina isomyoglobins: molecular basis for functional heterogeneity. Biochim. Biophys. Acta 1383:55-62.
    • (1998) Biochim. Biophys. Acta , vol.1383 , pp. 55-62
    • Kleinschmidt, T.1    Weber, R.E.2
  • 25
    • 13144253092 scopus 로고    scopus 로고
    • Molecular evolution: Recent cases of spliceosomal intron gain?
    • Logsdon, J. M., A. Stoltzfus, and W. F. Doolittle. 1998. Molecular evolution: recent cases of spliceosomal intron gain? Curr. Biol. 8:R560-563.
    • (1998) Curr. Biol. , vol.8
    • Logsdon, J.M.1    Stoltzfus, A.2    Doolittle, W.F.3
  • 27
    • 0032972509 scopus 로고    scopus 로고
    • PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization
    • Nakai, K., and P. Horton. 1999. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24:34-36.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 34-36
    • Nakai, K.1    Horton, P.2
  • 29
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 30
    • 0030788541 scopus 로고    scopus 로고
    • Extracting protein alignment models from the sequence database
    • Neuwald, A. F., J. S. Liu, D. J. Lipman, and C. E. Lawrence. 1997. Extracting protein alignment models from the sequence database. Nucleic Acids Res. 25:1665-1677.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1665-1677
    • Neuwald, A.F.1    Liu, J.S.2    Lipman, D.J.3    Lawrence, C.E.4
  • 32
    • 0028286120 scopus 로고
    • Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site
    • Ota, T., and M. Nei. 1994. Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site. Mol. Biol. Evol. 11:613-619.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 613-619
    • Ota, T.1    Nei, M.2
  • 34
    • 0041649201 scopus 로고
    • Introns between protein domains: Selective insertion or frameshifting?
    • Rogers, J. H. 1986. Introns between protein domains: selective insertion or frameshifting? Trends Genet. 2:223.
    • (1986) Trends Genet. , vol.2 , pp. 223
    • Rogers, J.H.1
  • 36
    • 0001063415 scopus 로고
    • Vertebrates without erythrocytes and blood pigment
    • Ruud, J. T. 1954. Vertebrates without erythrocytes and blood pigment. Nature 173:848-850.
    • (1954) Nature , vol.173 , pp. 848-850
    • Ruud, J.T.1
  • 37
    • 0037449744 scopus 로고    scopus 로고
    • How does the eye breathe? Evidence for neuroglobin-mediated oxygen supply in the mammalian retina
    • Schmidt, M., A. Giessl, T. Laufs, T. Hankeln, U. Wolfrum, and T. Burmester. 2003. How does the eye breathe? Evidence for neuroglobin-mediated oxygen supply in the mammalian retina. J. Biol. Chem. 278:1932-1935.
    • (2003) J. Biol. Chem. , vol.278 , pp. 1932-1935
    • Schmidt, M.1    Giessl, A.2    Laufs, T.3    Hankeln, T.4    Wolfrum, U.5    Burmester, T.6
  • 38
    • 10744220623 scopus 로고    scopus 로고
    • Cytoglobin is a respiratory protein expressed in connective tissue and neurons that is up-regulated by hypoxia
    • Schmidt, M., F. Gerlach, A. Avivi et al. (11 co-authors). 2004. Cytoglobin is a respiratory protein expressed in connective tissue and neurons that is up-regulated by hypoxia. J. Biol. Chem. 279:8063-8069.
    • (2004) J. Biol. Chem. , vol.279 , pp. 8063-8069
    • Schmidt, M.1    Gerlach, F.2    Avivi, A.3
  • 40
    • 0032544075 scopus 로고    scopus 로고
    • Altering hemoglobin levels changes energy status in maize cells under hypoxia
    • Sowa, A. W., S. M. G. Duff, P. A. Guy, and R. D. Hill. 1998. Altering hemoglobin levels changes energy status in maize cells under hypoxia. Proc. Natl. Acad. Sci. USA 95:10317-10321.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 10317-10321
    • Sowa, A.W.1    Duff, S.M.G.2    Guy, P.A.3    Hill, R.D.4
  • 42
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 43
    • 0035909992 scopus 로고    scopus 로고
    • Neuroglobin is up-regulated by and protects neurons from hypoxic-ischemic injury
    • Sun, Y., K. Jin, X. O. Mao, Y. Zhu, and D. A. Greenberg. 2001. Neuroglobin is up-regulated by and protects neurons from hypoxic-ischemic injury. Proc. Natl. Acad. Sci. USA 98:15306-15311.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 15306-15311
    • Sun, Y.1    Jin, K.2    Mao, X.O.3    Zhu, Y.4    Greenberg, D.A.5
  • 44
    • 0036468881 scopus 로고    scopus 로고
    • Vertebrate genome sequencing: Building a backbone for comparative genomics
    • Thomas, J. W., and J. W. Touchman. 2002. Vertebrate genome sequencing: building a backbone for comparative genomics. Trends. Genet. 18:104-108.
    • (2002) Trends. Genet. , vol.18 , pp. 104-108
    • Thomas, J.W.1    Touchman, J.W.2
  • 45
    • 0037205447 scopus 로고    scopus 로고
    • A ubiquitously expressed human hexacoordinate hemoglobin
    • Trent, J. T. 3rd, and M. S. Hargrove. 2002. A ubiquitously expressed human hexacoordinate hemoglobin. J. Biol. Chem. 277:19538-19545.
    • (2002) J. Biol. Chem. , vol.277 , pp. 19538-19545
    • Trent III, J.T.1    Hargrove, M.S.2
  • 46
    • 0035066385 scopus 로고    scopus 로고
    • Nonvertebrate hemoglobins: Functions and molecular adaptations
    • Weber, R. E., and S. N. Vinogradov. 2001. Nonvertebrate hemoglobins: functions and molecular adaptations. Physiol. Rev. 81:569-628.
    • (2001) Physiol. Rev. , vol.81 , pp. 569-628
    • Weber, R.E.1    Vinogradov, S.N.2
  • 47
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan, S., and Goldman, N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18:691-699.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 48
    • 0036245348 scopus 로고    scopus 로고
    • Medaka - A model organism from the far east
    • Wittbrodt, J., A. Shima, and M. Schartl. 2002. Medaka - a model organism from the far east. Nat. Rev. Genet. 3:53-64.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 53-64
    • Wittbrodt, J.1    Shima, A.2    Schartl, M.3
  • 49
    • 0001978749 scopus 로고
    • Functions of cytoplasmatic hemoglobins and myohemerythrin
    • Wittenberg, J. B. 1992. Functions of cytoplasmatic hemoglobins and myohemerythrin. Adv. Comp. Environ. Physiol. 13:60-85.
    • (1992) Adv. Comp. Environ. Physiol. , vol.13 , pp. 60-85
    • Wittenberg, J.B.1
  • 50
  • 51
    • 2642546072 scopus 로고    scopus 로고
    • Interspecies comparison of neuroglobin, cytoglobin and myoglobin: Sequence evolution and candidate regulatory elements
    • Wystub, S., B. Ebner, C. Fuchs, B. Weich, T. Burmester, and T. Hankeln. 2004. Interspecies comparison of neuroglobin, cytoglobin and myoglobin: sequence evolution and candidate regulatory elements. Cytogenet. Genome Res. 105:65-78.
    • (2004) Cytogenet. Genome Res. , vol.105 , pp. 65-78
    • Wystub, S.1    Ebner, B.2    Fuchs, C.3    Weich, B.4    Burmester, T.5    Hankeln, T.6


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