-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030032052
-
A convenient and reproducible method to genetically transform bacteria of the genus Bifidobacterium
-
Argnani, A., R. J. Leer, N. van Luijk, and P. H. Pouwels. 1996. A convenient and reproducible method to genetically transform bacteria of the genus Bifidobacterium. Microbiology 142:109-114.
-
(1996)
Microbiology
, vol.142
, pp. 109-114
-
-
Argnani, A.1
Leer, R.J.2
Van Luijk, N.3
Pouwels, P.H.4
-
3
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall, and E. L. Sonnhammer. 2002. The Pfam protein families database. Nucleic Acids Res. 30:276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
4
-
-
0028685354
-
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation
-
Bucher, P., and A. Bairoch. 1994. A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2:53-61.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 53-61
-
-
Bucher, P.1
Bairoch, A.2
-
5
-
-
0000182975
-
XL1-Blue: A high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection
-
Bullock, W. O., J. M. Fernandez, and J. M. Stuart. 1987. XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. BioTechniques 5:376-379.
-
(1987)
BioTechniques
, vol.5
, pp. 376-379
-
-
Bullock, W.O.1
Fernandez, J.M.2
Stuart, J.M.3
-
6
-
-
0017807890
-
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
-
Chang, A. C., and S. N. Cohen. 1978. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J. Bacteriol. 134:1141-1156.
-
(1978)
J. Bacteriol.
, vol.134
, pp. 1141-1156
-
-
Chang, A.C.1
Cohen, S.N.2
-
7
-
-
0029784979
-
Identification and characterization of the origin of conjugative transfer (oriT) and a gene (nes) encoding a single-stranded endonuclease on the staphylococcal plasmid pGO1
-
Climo, M. W., V. K. Sharma, and G. L. Archer. 1996. Identification and characterization of the origin of conjugative transfer (oriT) and a gene (nes) encoding a single-stranded endonuclease on the staphylococcal plasmid pGO1. J. Bacteriol. 178:4975-4983.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4975-4983
-
-
Climo, M.W.1
Sharma, V.K.2
Archer, G.L.3
-
8
-
-
1442274707
-
Molecular characterization of three plasmids from Bifidobacterium longum
-
Corneau, N., E. Emond, and G. LaPointe. 2004. Molecular characterization of three plasmids from Bifidobacterium longum. Plasmid 51:87-100.
-
(2004)
Plasmid
, vol.51
, pp. 87-100
-
-
Corneau, N.1
Emond, E.2
Lapointe, G.3
-
9
-
-
0033580820
-
A critical DnaA box directs the cooperative binding of the Escherichia coli DnaA protein to the plasmid RK2 replication origin
-
Doran, K. S., D. R. Helinski, and I. Konieczny. 1999. A critical DnaA box directs the cooperative binding of the Escherichia coli DnaA protein to the plasmid RK2 replication origin. J. Biol. Chem. 274:17918-17923.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17918-17923
-
-
Doran, K.S.1
Helinski, D.R.2
Konieczny, I.3
-
10
-
-
0026331326
-
Plasmid replication and structural stability in Bacillus subtilis
-
Ehrlich, S. D., C. Bruand, S. Sozhamannan, P. Dabert, M. F. Gros, L. Janniere, and A. Gruss. 1991. Plasmid replication and structural stability in Bacillus subtilis. Res. Microbiol. 142:869-873.
-
(1991)
Res. Microbiol.
, vol.142
, pp. 869-873
-
-
Ehrlich, S.D.1
Bruand, C.2
Sozhamannan, S.3
Dabert, P.4
Gros, M.F.5
Janniere, L.6
Gruss, A.7
-
11
-
-
0001545459
-
AL
-
P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.). Williams & Wilkins, Baltimore, Md.
-
AL, p. 1472-1481. In P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2. Williams & Wilkins, Baltimore, Md.
-
(1986)
Bergey's Manual of Systematic Bacteriology, Vol. 2
, vol.2
, pp. 1472-1481
-
-
Goodfellow, M.1
-
12
-
-
0026028892
-
Molecular organization of the minimal replicon of novel, narrow-host-range, lactococcal plasmid pCI305
-
Hayes, F., P. Vos, G. F. Fitzgerald, W. M. de Vos, and C. Daly. 1991. Molecular organization of the minimal replicon of novel, narrow-host-range, lactococcal plasmid pCI305. Plasmid 25:16-26.
-
(1991)
Plasmid
, vol.25
, pp. 16-26
-
-
Hayes, F.1
Vos, P.2
Fitzgerald, G.F.3
De Vos, W.M.4
Daly, C.5
-
13
-
-
0026748738
-
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
-
Ilyina, T. V., and E. V. Koonin. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 20:3279-3285.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3279-3285
-
-
Ilyina, T.V.1
Koonin, E.V.2
-
14
-
-
0024433231
-
The presence of plasmids in Bifidobacterium breve
-
Iwata, M., and T. Morishita. 1989. The presence of plasmids in Bifidobacterium breve. Lett. Appl. Microbiol. 9:165-168.
-
(1989)
Lett. Appl. Microbiol.
, vol.9
, pp. 165-168
-
-
Iwata, M.1
Morishita, T.2
-
15
-
-
0037544973
-
Cloned cytosine deaminase gene expression of Bifidobacterium longum and application to enzyme/pro-drug therapy of hypoxic solid tumors
-
Kanamura, T., T. Sasaki, M. Fujimori, K. Yazawa, Y. Kano, J. Amano, and S. Tanicuchi. 2002. Cloned cytosine deaminase gene expression of Bifidobacterium longum and application to enzyme/pro-drug therapy of hypoxic solid tumors. Biosci. Biotechnol. Biochem. 66:2362-2366.
-
(2002)
Biosci. Biotechnol. Biochem.
, vol.66
, pp. 2362-2366
-
-
Kanamura, T.1
Sasaki, T.2
Fujimori, M.3
Yazawa, K.4
Kano, Y.5
Amano, J.6
Tanicuchi, S.7
-
16
-
-
0027372831
-
Theta replication of the lactococcal plasmid pWVO2
-
Kiewiet, R., S. Bron, K. de Jonge, G. Venema, and J. F. Seegers. 1993. Theta replication of the lactococcal plasmid pWVO2. Mol. Microbiol. 10:319-327.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 319-327
-
-
Kiewiet, R.1
Bron, S.2
De Jonge, K.3
Venema, G.4
Seegers, J.F.5
-
17
-
-
0033198766
-
Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution
-
Komori, H., F. Matsunaga, Y. Higuchi, M. Ishiai, C. Wada, and K. Miki. 1999. Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution. EMBO J. 18:4597-4607.
-
(1999)
EMBO J.
, vol.18
, pp. 4597-4607
-
-
Komori, H.1
Matsunaga, F.2
Higuchi, Y.3
Ishiai, M.4
Wada, C.5
Miki, K.6
-
18
-
-
0037328974
-
Bifidobacterium adolescentis as a delivery system of endostatin for cancer gene therapy: Selective inhibitor of angiogenesis and hypoxic tumor growth
-
Li, X., G. F. Fu, Y. R. Fan, W. H. Liu, X. J. Liu, J. J. Wang, and G. X. Xu. 2003. Bifidobacterium adolescentis as a delivery system of endostatin for cancer gene therapy: selective inhibitor of angiogenesis and hypoxic tumor growth. Cancer Gene Ther. 10:105-111.
-
(2003)
Cancer Gene Ther.
, vol.10
, pp. 105-111
-
-
Li, X.1
Fu, G.F.2
Fan, Y.R.3
Liu, W.H.4
Liu, X.J.5
Wang, J.J.6
Xu, G.X.7
-
19
-
-
0031181083
-
Construction of Escherichia coli-Bifidobacterium longum shuttle vector transforming B. longum 105-A and 108-A
-
Matsumura, H., A. Takeuchi, and Y. Kano. 1997. Construction of Escherichia coli-Bifidobacterium longum shuttle vector transforming B. longum 105-A and 108-A. Biosci. Biotechnol. Biochem. 61:1211-1212.
-
(1997)
Biosci. Biotechnol. Biochem.
, vol.61
, pp. 1211-1212
-
-
Matsumura, H.1
Takeuchi, A.2
Kano, Y.3
-
20
-
-
0025175618
-
Characterization and molecular cloning of Bifidobacterium longum cryptic plasmid pMB1
-
Matteuzzi, D., P. Brigidi, M. Rossi, and D. Di. 1990. Characterization and molecular cloning of Bifidobacterium longum cryptic plasmid pMB1. Lett. Appl. Microbiol. 11:220-223.
-
(1990)
Lett. Appl. Microbiol.
, vol.11
, pp. 220-223
-
-
Matteuzzi, D.1
Brigidi, P.2
Rossi, M.3
Di, D.4
-
21
-
-
0028149645
-
Transformation of Bifidobacterium longum with pRM2, a constructed Escherichia coli-B. longum shuttle vector
-
Missich, R., B. Sgorbati, and D. J. LeBlanc. 1994. Transformation of Bifidobacterium longum with pRM2, a constructed Escherichia coli-B. longum shuttle vector. Plasmid 32:208-211.
-
(1994)
Plasmid
, vol.32
, pp. 208-211
-
-
Missich, R.1
Sgorbati, B.2
Leblanc, D.J.3
-
22
-
-
0025606230
-
Control of plasmid replication-how do DNA iterons set the replication frequency?
-
Nordstrom, K. 1990. Control of plasmid replication-how do DNA iterons set the replication frequency? Cell 63:1121-1124.
-
(1990)
Cell
, vol.63
, pp. 1121-1124
-
-
Nordstrom, K.1
-
23
-
-
0021073779
-
Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis
-
Norrander, J., T. Kempe, and J. Messing. 1983. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis. Gene 26:101-106.
-
(1983)
Gene
, vol.26
, pp. 101-106
-
-
Norrander, J.1
Kempe, T.2
Messing, J.3
-
24
-
-
0032934709
-
Molecular characterisation of a 5.75-kb cryptic plasmid from Bifidobacterium breve NCFB 2258 and determination of mode of replication
-
O'Riordan, K., and G. F. Fitzgerald. 1999. Molecular characterisation of a 5.75-kb cryptic plasmid from Bifidobacterium breve NCFB 2258 and determination of mode of replication. FEMS Microbiol. Lett. 174:285-294.
-
(1999)
FEMS Microbiol. Lett.
, vol.174
, pp. 285-294
-
-
O'Riordan, K.1
Fitzgerald, G.F.2
-
25
-
-
0034861895
-
Screening of intestinal microflora for effective probiotic bacteria
-
O'Sullivan, D. J. 2001. Screening of intestinal microflora for effective probiotic bacteria. J. Agric. Food Chem. 49:1751-1760.
-
(2001)
J. Agric. Food Chem.
, vol.49
, pp. 1751-1760
-
-
O'Sullivan, D.J.1
-
26
-
-
0035968326
-
DnaA box sequences as the site for helicase delivery during plasmid RK2 replication initiation in Escherichia coli
-
Pacek, M., G. Konopa, and I. Konieczny. 2001. DnaA box sequences as the site for helicase delivery during plasmid RK2 replication initiation in Escherichia coli. J. Biol. Chem. 276:23639-23644.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 23639-23644
-
-
Pacek, M.1
Konopa, G.2
Konieczny, I.3
-
27
-
-
0033056837
-
Sequence analysis of plasmid pKJSO from Bifidobacterium longum
-
Park, M. S., D. W. Shin, K. H. Lee, and G. E. Ji. 1999. Sequence analysis of plasmid pKJSO from Bifidobacterium longum. Microbiology 145:585-592.
-
(1999)
Microbiology
, vol.145
, pp. 585-592
-
-
Park, M.S.1
Shin, D.W.2
Lee, K.H.3
Ji, G.E.4
-
28
-
-
0031058578
-
An efficient transformation system for Bifidobacterium spp.
-
Rossi, M., P. Bridigi, and D. Matteuzzi. 1997. An efficient transformation system for Bifidobacterium spp. Lett. Appl. Microbiol. 24:33-36.
-
(1997)
Lett. Appl. Microbiol.
, vol.24
, pp. 33-36
-
-
Rossi, M.1
Bridigi, P.2
Matteuzzi, D.3
-
29
-
-
0029923078
-
Characterization of the plasmid pMB1 from Bifidobacterium longum and its use for shuttle vector construction
-
Rossi, M., P. Brigidi, y. R. A. Gonzalez Vara, and D. Matteuzzi. 1996. Characterization of the plasmid pMB1 from Bifidobacterium longum and its use for shuttle vector construction. Res. Microbiol. 147:133-143.
-
(1996)
Res. Microbiol.
, vol.147
, pp. 133-143
-
-
Rossi, M.1
Brigidi, P.2
Gonzalez Vara, Y.R.A.3
Matteuzzi, D.4
-
31
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
32
-
-
0000191489
-
AL
-
P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.). Williams & Wilkins, Baltimore, Md.
-
AL, p. 1418-1434. In P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2. Williams & Wilkins, Baltimore, Md.
-
(1986)
Bergey's Manual of Systematic Bacteriology, Vol.2
, vol.2
, pp. 1418-1434
-
-
Scardovi, V.1
-
33
-
-
0037195083
-
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
-
Schell, M. A., M. Karmirantzou, B. Snel, D. Vilanova, B. Berger, G. Pessi, M. C. Zwahlen, F. Desiere, P. Bork, M. Delley, R. D. Pridmore, and F. Arigoni. 2002. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. USA 99:14422-14427.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14422-14427
-
-
Schell, M.A.1
Karmirantzou, M.2
Snel, B.3
Vilanova, D.4
Berger, B.5
Pessi, G.6
Zwahlen, M.C.7
Desiere, F.8
Bork, P.9
Delley, M.10
Pridmore, R.D.11
Arigoni, F.12
-
34
-
-
0028965136
-
Use of continuous culture for the selection of plasmids with improved segregational stability
-
Seegers, J. F., C. M. Franke, R. Kiewiet, G. Venema, and S. Bron. 1995. Use of continuous culture for the selection of plasmids with improved segregational stability. Plasmid 33:71-77.
-
(1995)
Plasmid
, vol.33
, pp. 71-77
-
-
Seegers, J.F.1
Franke, C.M.2
Kiewiet, R.3
Venema, G.4
Bron, S.5
-
36
-
-
0022790845
-
Related structures in the plasmid profiles of Bifidobacterium asteroides, B. indicum and B. globosum
-
Sgorbati, B., V. Scardovi, and D. J. Leblanc. 1986. Related structures in the plasmid profiles of Bifidobacterium asteroides, B. indicum and B. globosum. Microbiologica 9:443-454.
-
(1986)
Microbiologica
, vol.9
, pp. 443-454
-
-
Sgorbati, B.1
Scardovi, V.2
Leblanc, D.J.3
-
37
-
-
0022793616
-
Related structures in the plasmid profiles of Bifidobacterium longum
-
Sgorbati, B., V. Scardovi, and D. J. Leblanc. 1986. Related structures in the plasmid profiles of Bifidobacterium longum. Microbiologica 9:415-422.
-
(1986)
Microbiologica
, vol.9
, pp. 415-422
-
-
Sgorbati, B.1
Scardovi, V.2
Leblanc, D.J.3
-
39
-
-
0035869023
-
Mechanism of origin unwinding: Sequential binding of DnaA to double- And single-stranded DNA
-
Speck, C., and W. Messer. 2001. Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA. EMBO J. 20:1469-1476.
-
(2001)
EMBO J.
, vol.20
, pp. 1469-1476
-
-
Speck, C.1
Messer, W.2
-
40
-
-
4844228975
-
Isolation of Rhodococcus equi from the feces of indigenous animals and soil from the Lower Zambezi National Park and Lochinvar National Park, Zambia
-
Takai, S., M. Syakalima, J. Yasuda, Y. Sasaki, H. Tsutsumi, E. Miyagawa, K. Wada, T. Kakuda, S. Tsubaki, and C. Sugimoto. 2004. Isolation of Rhodococcus equi from the feces of indigenous animals and soil from the Lower Zambezi National Park and Lochinvar National Park, Zambia. J. Vet. Med. Sci. 66:743-746.
-
(2004)
J. Vet. Med. Sci.
, vol.66
, pp. 743-746
-
-
Takai, S.1
Syakalima, M.2
Yasuda, J.3
Sasaki, Y.4
Tsutsumi, H.5
Miyagawa, E.6
Wada, K.7
Kakuda, T.8
Tsubaki, S.9
Sugimoto, C.10
-
41
-
-
15744362314
-
Structural and functional analysis of pTB6 from Bifidobacterium longum
-
Tanaka, K., K. Samura, and Y. Kano. 2005. Structural and functional analysis of pTB6 from Bifidobacterium longum. Biosci. Biotechnol. Biochem. 69:422-425.
-
(2005)
Biosci. Biotechnol. Biochem.
, vol.69
, pp. 422-425
-
-
Tanaka, K.1
Samura, K.2
Kano, Y.3
-
42
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
Thompson, J. D., F. Plewniak, and O. Poch. 1999. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27:2682-2690.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2682-2690
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
43
-
-
0034032620
-
Bifidobacterium longum as a delivery system for cancer gene therapy: Selective localization and growth in hypoxic tumors
-
Yazawa, K., M. Fujimori, J. Amano, Y. Kano, and S. Taniguchi. 2000. Bifidobacterium longum as a delivery system for cancer gene therapy: selective localization and growth in hypoxic tumors. Cancer Gene Ther. 7:269-274.
-
(2000)
Cancer Gene Ther.
, vol.7
, pp. 269-274
-
-
Yazawa, K.1
Fujimori, M.2
Amano, J.3
Kano, Y.4
Taniguchi, S.5
|