Addition of U(VI) to a uranium mining waste sample and resulting changes in the indigenous bacterial community

Geobiology

Volumn 3, Issue 4, 2005, Pages 275-285

  Geissler, A ^a   Selenska Pobell, S ^a  

^a INSTITUTE OF ION BEAM PHYSICS AND MATERIALS RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; COMMUNITY STRUCTURE; MINING; SOIL MICROORGANISM; SOIL POLLUTION; URANIUM;

ACIDOBACTERIA; ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; GAMMAPROTEOBACTERIA; GEOBACTER; PSEUDOMONAS;

EID: 33644842864     PISSN: 14724677     EISSN: 14724669     Source Type: Journal    
DOI: 10.1111/j.1472-4669.2006.00061.x     Document Type: Article

References (76)

1. Allan VJM Callow ME Macaskie LE Paterson-Beedle M 2002 Effect of nutrient limitation on biofilm formation and phosphatase activity of a Citrobacter sp Microbiology 148 277 288
2. Altschul SF Madden TL Schäffer AA Zhang J Zhang Z Miller W Lipman DJ 1997 Gapped blast and psi-blast:a new generation of protein database search programs Nucleic Acids Research 25 3389 3402
3. Anderson RT Lovley DR 2002 Microbial redox interactions with uranium: an environmental perspective In Interactions of Microorganisms with Radionuclides (eds Keith-Roach MJ Lievens FR Elsevier Science Ltd. Oxford pp 205 223
4. Anderson RT Vrionis HA Ortiz-Bernad I Resch CT Long PE Dayvault R Karp K Marutzky S Metzler DR Peacock A White DC Lowe M Lovley DR 2003 Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer Applied and Environmental Microbiology 69 5884 5891
5. Battin TJ Wille A Sattler B Psenner R 2001 Phylogenetic and functional heterogeneity of sediment biofilms along environmental gradients in a glacial stream Applied and Environmental Microbiology 67 799 807
6. Bencheikh-Latmani R Leckie JO Bargar JR 2003 Fate of uranyl in a quaternary system composed of uranyl, citrate, goethite, and Pseudomonas fluorescens Environmental Science and Technology 37 3555 3559
7. Bostick BC Fendorf S Barnett MO Jardine PM Brooks SC 2002 Uranyl surface complexes formed on subsurface media from DOE facilities Soil Science Society of American Journal 66 99 108
8. Characklis WG Marshall KC 1990 Biofilms Wiley New York
9. Chicote E Garcia AM Moreno DA Sarró MI Lorenzo PI Montero F 2005 Isolation and identification of bacteria from spent nuclear fuel pools Journal of Industrial Microbiology and Biotechnology 32 155 162
10. Coates JD Cole KA Chakraborty R O'Connor SM Achenbach LA 2002 Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration Applied and Environmental Microbiology 68 2445 2452
11. Crocker FH Fredrickson JK White DC Ringelberg DB Balkwill DL 2000 Phylogenetic and physiological diversity of Arthrobacter strains isolated from unconsolidated subsurface sediments Microbiology 146 1295 1310
12. DiSpirito AA Tuovinen OH 1982 Uranous ion oxidation and carbon dioxide fixation by Thiobacillus ferrooxidans Archives of Microbiology 133 28 32
13. Ehrlich HL 1998 Geomicrobiology: its significance for geology Earth-Science Reviews 45 45 60
14. Elias DA Krumholz LR Wong D Long PE Suflita JM 2003 Characterization of microbial activities and U reduction in a shallow aquifer contaminated by uranium mill tailings Microbial Ecology 46 83 91
15. Felsenstein J 1993 phylip (Phylogeny Inference Package) version 3.5c Department of Genectics, University of Washington Seattle
16. Fields MW Yan T Rhee S-K Carroll SL Jardine PM Watson DB Criddle CS Zhou J 2005 Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste FEMS Microbiology Ecology 53 417 428
17. Francis AJ 1998 Biotransformation of uranium and other actinides in radioactive wastes Journal of Alloys and Compounds 271-273 78 84
18. Francis AJ Gillow JB Dodge CJ Harris R Beveridge TJ Papenguth HW 2004 Uranium association with halophilic and non-halophilic bacteria and archaea Radiochimica Acta 92 481 488
19. Fredrickson JK Zachara JM Balkwill DL Kennedy D Li SW Konstandarithes HM Daly MJ Romine MF Brockman FJ 2004 Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington State Applied and Environmental Microbiology 70 4230 4241
20. Geissler A 2003 Molekulare Analyse der bakteriellen Diversität in Uranabraumhalden Diploma Thesis. Wissenschaftlich-Technische Berichte FZR-377, TU Bergakademie, Freiburg, Germany
21. González-Munoz MT Ben Omar N Martínez-Canamero M Rodríguez-Gallego M Lopez-Galindo A Arias JM 1996 Struvite and calcite crystallization induced by cellular membranes of Myxococcus xanthus Journal of Crystal Growth 163 434 439
22. González-Munoz MT Fernández-Luque B Martínez-Ruiz F Ben Chekroun K Arias JM Rodríguez-Gallego M Martínez-Canamero M de Linares C Paytan A 2003 Precipitation of barite by Myxococcus xanthus: possible implications for the biogeochemical cycle of barium Applied and Environmental Microbiology 69 5722 5725
23. Hanbo Z Changqun D Qiyong S Weimin R Tao S Lizhong C Zhiwei Z Bin H 2004 Genetic and physiological diversity of phylogenetically and geographically distinct groups of Arthrobacter isolated from lead-zinc mine tailings FEMS Microbiology Ecology 49 333 341
24. Harrison JJ Ceri H Stremick C Turner RJ 2004 Differences in biofilm and planktonic cell mediated reduction of metalloid oxyanions FEMS Microbiology Letters 235 357 362
25. Hersman LE Forsythe JH Ticknor LO Maurice PA 2001 Growth of Pseudomonas mendocina on Fe(III) (hydr)oxides Applied and Environmental Microbiology 67 4448 4453
26. Holmes DE Finneran KT O'Neil RA Lovley DR 2002 Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments Applied and Environmental Microbiology 68 2300 2306
27. Hugenholtz P Pitulle C Hershberger KL Pace NR 1998a Novel division level bacterial diversity in a Yellowstone Hot Spring Journal of Bacteriology 180 366 376
28. Hugenholtz P Goebel BM Pace NR 1998b Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity Journal of Bacteriology 180 4765 4774
29. Istok JD Senko JM Krumholz LR Watson D Bogle MA Peacock A Chang YJ White DC 2004 In situ bioreduction of technetium and uranium in a nitrate-contaminated aquifer Environmental Science and Technology 38 468 475
30. John SG Ruggiero CE Hersman LE Tung C-S Neu MP 2001 Siderophore mediated plutonium accumulation by Microbacterium flavescens (JG-9) Environmental Science and Technology 35 2942 2948
31. Johnson DB Rolfe S Hallberg KB Iversen E 2001 Isolation and phylogenetic characterization of acidophilic microorganisms indigenous to acidic drainage waters at an abandoned Norwegian copper mine Environmental Microbiology 3 630 637
32. Kalinowski BE Oskarsson A Albinsson Y Arlinger J Ödegaard-Jensen A Andlid T Pedersen K 2004 Microbial leaching of uranium and other trace elements from shale mine tailings at Ranstad Geoderma 122 177 194
33. Kim J Dong H Seabaugh J Newell SW Eberl DD 2004 Role of microbes in the smectite-to-illite reaction Science 303 830 832
34. Lovley DR 2002 Dissimilatory metal reduction: from early life to bioremediation ASM News 68 231 237
35. Lovley DR Giovannoni SJ White DC Champine JE Phillips EJP Gorby YA Goodwin S 1993 Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals Archives of Microbiology 159 336 344
36. Lovley DR Phillips EJP Gorby YA Landa ER 1991 Microbial reduction of uranium Nature 350 413 416
37. Macaskie LE Bonthrone KM Yong P Goddard DT 2000 Enzymically mediated bioprecipitation of uranium by a Citrobacter sp.: a concerted role for exocellular lipo-polysaccharide and associated phosphatase in biomineral formation Microbiology 146 1855 1867
38. 4 Science 257 782 784
39. Maidak BL Cole JR Lilburn TG Parker CT Jr Saxman Stredwick JM Garrity GM Li B Olsen GJ Pramanik S Schmidt TM Tiedje JM 2000 The RDP (Ribosomal Database Project) continues Nucleic Acids Research 28 173 174
40. Marchesi JR Sato T Weightman AJ Martin TA Fry JC Hiom SJ Wade WG 1998 Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA Applied and Environmental Microbiology 64 795 799
41. McLean J Beveridge TJ 2001 Chromate reduction by a pseudomonad isolated from a site contaminated with chromated copper arsenate Applied and Environmental Microbiology 67 1076 1084
42. Merroun M Hennig C Rossberg A Reich T Selenska-Pobell S 2003a Characterization of U(VI)-Acidithiobacillus ferrooxidans complexes using EXAFS, transmission electron microscopy, and energy-dispersive X-ray analysis Radiochimica Acta 91 583 591
43. Merroun ML Geipel G Nicolai R Heise K-H Selenska-Pobell S 2003b Complexation of uranium (VI) by three eco-types of Acidithiobacillus ferrooxidans studied using time-resolved laser-induced fluorescence spectroscopy and infrared spectroscopy Biometals 16 331 339
44. Merroun M Hennig C Rossberg A Reich T Nicolai R Heise K-H Selenska-Pobell S 2002 Characterization of uranium (VI) complexes formed by different bacteria relevant to uranium mining waste piles In Uranium in the Aquatic Environment (eds Merkel BJ Planer-Friedrich B Wolkersdorfer C Springer Verlag Berlin pp 505 511
45. Merroun ML Raff J Rossberg A Hennig C Reich T Selenska-Pobell S 2005 Complexation of uranium by cells and S-layer sheets of Bacillus sphaericus JG-A12 Applied and Environmental Microbiology 71 5532 5543
46. Minz D Fishbain S Green SJ Muyzer G Cohen Y Rittmann BE Stahl DA 1999 Unexpected population distribution in a microbial mat community: sulfate-reducing bacteria localized to the highly oxic chemocline in contrast to a eukaryotic preference for anoxia Applied and Environmental Microbiology 65 4659 4665
47. Nazina TN Kosareva IM Petrunyaka VV Savushkina MK Kudriavtsev EG Lebedev VA Ahunov VD Revenko YA Khafizov RR Osipov GA Belyaev SS Ivanov MV 2004 Microbiology of formation waters from the deep repository of liquid radioactive wastes Severnyi FEMS Microbiology Ecology 49 97 107
48. Nedelkova M Radeva G Selenska-Pobell S 2005 Molecular bacterial diversity in water at the deep-well monitoring site at Tomsk-7 In Underground Injection Science and Technology (eds Tsang C-F Apps JA The Netherlands Elsevier Amsterdam pp 521 536
49. Nevin KP Finneran KT Lovley DR 2003 Microorganisms associated with uranium bioremediation in a high-salinity subsurface sediment Applied and Environmental Microbiology 69 3672 3675
50. North NN Dollhopf SL Petrie L Istok JD Balkwill DL Kostka JE 2004 Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate Applied and Environmental Microbiology 70 4911 4920
51. Ohnuki T Yoshida T Ozaki T Samadfam M Kozai N Yubuta K Mitsugashira T Kasama T Francis AJ 2005 Interactions of uranium with bacteria and kaolinite clay Chemical Geology 220 237 243
52. Pace NR 1997 A molecular view of microbial diversity and the biosphere Science 276 734 740
53. Pedersen K 1997 Microbial life in deep granitic rock FEMS Microbiology Reviews 20 399 414
54. Raff J Merroun M Rossberg A Soltmann U Böttcher H Selenska-Pobell S 2004 Interactions of the U mining waste pile isolate Bacillus sphaericus JG-A12 with U In Water-Rock Interaction (eds Wanty RB Seal RR Taylor & Francis Group, London, UK pp 697 701
55. Raff J Soltmann U Matys S Selenska-Pobell S Böttcher H Pompe W 2003 Biosorption of uranium and copper by biocers Chemistry of Materials 15 240 244
56. Reich T Moll H Arnold T Denecke MA Hennig C Geipel G Bernhard G Nitsche H Allen PG Bucher JJ Edelstein NM Shuh DK 1998 An EXAFS study of uranium(VI) sorption onto silica gel and ferrihydrite Journal of Electron Spectroscopy and Related Phenomena 96 237 243
57. Reich T Moll H Denecke MA Geipel G Bernhard G Nitsche H Allen PG Bucher JJ Kaltsoyannis N Edelstein NM Shuh DK 1996 Characterization of hydrous uranyl silicate by EXAFS Radiochimica Acta 74 219 223
58. Reysenbach A-L Longnecker K Kirshtein J 2000 Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a mid-atlantic ridge hydrothermal vent Applied and Environmental Microbiology 66 3798 3806
59. Rosen R Becher D Büttner K Biran D Hecker M Ron EZ 2004 Highly phosphorylated bacterial proteins Proteomics 4 3068 3077
60. Ruggiero CE Boukhalfa H Forsythe JH Lack JG Hersman LE Neu MP 2005 Actinide and metal toxicity to perspective bioremediation bacteria Environmental Microbiology 7 88 97
61. Satchanska G Golovinsky E Selenska-Pobell S 2004 Bacterial diversity in a soil sample from uranium mining waste pile as estimated via a culture-independent 16S rDNA approach Comptes rendus de l'Académie bulgare des Sciences 57 75 82
62. Schäfer H Bernard L Courties C Lebaron P Servais P Pukall R Stackebrandt E Troussellier M Guindulain T Vives-Rego J Muyzer G 2001 Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations FEMS Microbiology Ecology 34 243 253
63. Selenska-Pobell S 1995 Direct and simultaneous extraction of DNA and RNA from soil In Molecular Microbial Ecology Manual 151 (eds Akkermans ADL van Elsas JD De Bruijn FJ Academic Publishers Dordrecht, the Netherlands, Kluwer pp 1 17
64. Selenska-Pobell S 2002 Diversity and activity of bacteria in uranium waste piles In Interactions of Microorganisms with Radionuclides (eds Keith-Roach MJ Livens FR Elsevier Sciences Ltd Oxford, UK pp 225 254
65. Selenska-Pobell S 2006 Uranium contaminated environments as a reservoir of unusual bacteria prospective for bioremediation and nanotechnology Perspectives in Environmental Microbiology Elsevier Sciences Ltd Oxford, UK in press
66. Selenska-Pobell S Flemming K Tzvetkova T Raff J Schnorpfeil M Geißler A 2002 Bacterial communities in uranium mining waste piles and their interaction with heavy metals In Uranium in the Aquatic Environment (eds Merkel BJ Planer-Friedrich B Wolkersdorfer C Springer Verlag Berlin pp 455 464
67. Selenska-Pobell S Kampf G Flemming K Radeva G Satchanska G 2001 Bacterial diversity in soil samples from two uranium mining waste piles as determined by rep-APD, RISA and the 16S rDNA retrieval Antonie Van Leeuwenhoek 79 149 161
68. Selenska-Pobell S Panak P Miteva V Boudakov I Bernhard G Nitsche H 1999 Selective accumulation of heavy metals by three indigenous Bacillus strains, B. cereus, B. megaterium and B. sphaericus from drain waters of a uranium waste pile FEMS Microbiology Ecology 29 59 67
69. Suzuki Y Banfield JF 2004 Resistance to, and accumulation of, uranium by bacteria from a uranium-contaminated site Geomicrobiology Journal 21 113 121
70. Suzuki Y Kelly SD Kemner KM Banfield JF 2003 Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment Applied and Environmental Microbiology 69 1337 1346
71. Suzuki Y Kelly SD Kemner KM Banfield JF 2004 Enzymatic U(VI) reduction by Desulfosporosinus species Radiochmica Acta 92 11 16
72. Suzuki Y Kelly SD Kemner KM Banfield JF 2005 Direct microbial reduction and subsequent preservation of uranium in natural near-surface sediment Applied and Environmental Microbiology 71 1790 1797
73. Teitzel GM Parsek MR 2003 Heavy metal resistance of biofilm and planktonic Pseudomonas aeruginosa Applied and Environmental Microbiology 69 2313 2320
74. Thompson JD Higgins DG Gibson TJ 1994 clustal w:improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Research 22 4673 4680
75. Tiedje JM 1998 Ecology of denitrification and dissimilatory nitrate reduction to ammonium In Biology of Anaerobic Microorganisms (ed Zehnder AJB Wiley-Interscience
76. Yanagibayashi M Nogi Y Li L Kato C 1999 Changes in the microbial community in Japan Trench sediment from a depth of 6292 m during cultivation without decompression FEMS Microbiology Letters 170 271 279