Bathymetric and geographic population structure in the pan-Atlantic deep-sea bivalve Deminucula atacellana (Schenck, 1939)

Molecular Ecology

Volumn 15, Issue 3, 2006, Pages 639-651

  Zardus, John D ^a,b   Etter, Ron J ^a   Chase, Michael R ^a   Rex, Michael A ^a   Boyle, Elizabeth E ^a  

^a UNIVERSITY OF MASSACHUSETTS BOSTON   (United States)

^b THE CITADEL   (United States)

Author keywords

Bathymetric patterns; Deep sea; Dispersal barrier; Isolation by depth; Mid Atlantic Ridge; Population genetic structure

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME DNA;

ANIMAL; ARTICLE; ATLANTIC OCEAN; BIVALVE; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; PHYLOGENY;

ANIMALS; ATLANTIC OCEAN; BIVALVIA; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; GEOGRAPHY; HAPLOTYPES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

BIVALVIA; DEMINUCULA ATACELLANA;

EID: 33644762841     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02832.x     Document Type: Article

References (91)

1. Aboim MA Menezes GM Schlitt T Rogers AD 2005 Genetic structure and history of populations of the deep-sea fish Helicolenus dactylopterus (Delaroche, 1809) inferred from mtDNA sequence analysis Molecular Ecology 14 1343 1354
2. Allen JA Sanders HL 1996 The zoogeography, diversity and origin of the deep-sea protobranch bivalves of the Atlantic: the epilogue Progress in Oceanography 38 95 153
3. Baco AR Smith CR Roderick GK Peek AS Vrijenhoek RC 1999 Molecular identification of vesicomyid clams associated with whale-falls on the California Slope Marine Ecology Progress Series 182 137 147
4. Bisol PM Costa R Sibuet M 1984 Ecological and genetical survey on two deep-sea holothurians: Benthogone rosea and Benthodytes typica Marine Ecology Progress Series 15 275 281
5. Bower AS Hunt HD 2000 Lagrangian observations of the deep western boundary current in the North Atlantic Ocean. Part I: large-scale pathways and spreading rates Journal of Physical Oceanography 30 764 783
6. Bower AS Le Cann B Rossby T et al. 2002 Directly measured mid-depth circulation in the northeastern North Atlantic Ocean Nature 419 603 607
7. Boyle EE Etter RJ Chase MR Rex MA in prep) Phylogeography of the pan-Atlantic deep-sea gastropod Benthonella tenella
8. Boyle EE Zardus JD Chase MR Etter RJ Rex MA 2004 Strategies for molecular genetic studies of preserved deep-sea macrofauna Deep-Sea Research 51 1319 1336
9. Burton RS 1983 Protein polymorphisms and genetic differentiation of marine invertebrate populations Marine Biology Letters 4 193 206
10. Burton RS Feldman MW 1982 Population genetics of coastal and estuarine invertebrates: Does larval behaviour influence population structure? In Estuarine Comparisons (ed Kennedy VS pp 537 551 Academic Press New York.
11. Burton RS Lee B-N 1994 Nuclear and mitochondrial gene genealogies and allozyme polymorphisms across a major phylogeographic break in the copepod Tigriopus californicus Proceedings of the National Academy of Sciences, USA 91 5197 5201
12. Carney RS Haedrich RL Rowe GT 1983 Zonation of fauna in the deep sea In The Sea Vol. 8 Deep-Sea Biology (ed Rowe GT pp 371 398 John Wiley & Sons New York.
13. Chase MR Etter RJ Rex MA Quattro JM 1998a Bathymetric patterns of genetic variation in a deep-sea protobranch bivalve, Deminucula atacellana Marine Biology 131 301 308
14. Chase MR Etter RJ Rex MA Quattro JM 1998b Extraction and amplification of mitochondrial DNA from formalin-fixed deep-sea mollusks BioTechniques 24 243 246
15. Clement M Posada D Crandall KA 2000 tcs: a computer program to estimate gene genealogies Molecular Ecology 9 1657 1659
16. Cooper RA Valentine P Uzmann JR Slater RA 1987 Submarine canyons In Georges Bank (ed Backus RH Bourne DW pp 52 63 MIT Press Cambridge, Massachusetts.
17. Doebeli M Dieckmann U 2003 Speciation along environmental gradients Nature 421 259 264
18. Doyle RW 1972 Genetic variation in Ophiomusium lymani (Echinodermata) populations in the deep sea Deep-Sea Research 19 661 664
19. Etter RJ Grassle JF 1992 Patterns of species diversity in the deep sea as a function of sediment particle size diversity Nature 360 576 578
20. Etter RJ Mullineaux LS 2001 Deep-sea communities In Marine Community Ecology (eds Bertness MD Hay M pp 367 393 Sinauer Associates Sunderland, Massachusetts.
21. Etter RJ Rex MA 1990 Population differentiation decreases with depth in deep-sea gastropods Deep-Sea Research 37 1251 1261
22. Etter RJ Rex MA Chase MR Quattro JM 1999 A genetic dimension to deep-sea biodiversity Deep-Sea Research Part I 46 1095 1099
23. Etter RJ Rex MA Chase MR Quattro JM 2005 Population differentiation decreases with depth in deep-sea bivalves Evolution 59 1479 1491
24. Etter RJ Boyle EE Dutra E Rex MA Chase MR in prep) Phylogeography of the pan-Atlantic deep-sea protobranch bivalve Ledella ultima
25. Excoffier L Smouse PE Quattro JM 1992 Analysis of molecular variance inferred from metric distances among DNA restriction haplotypes - application to human mitochondrial DNA restriction data Genetics 131 479 491
26. France SC 1994 Genetic population structure and gene flow among deep-sea amphipods of the California Continental Borderland Basins Marine Biology 118 67 77
27. France SC Kocher TD 1996 Geographic and bathymetric patterns of mitochondrial 16S rRNA sequence divergence among deep-sea amphipods, Eurythenes gryllus Marine Biology 126 633 643
28. Gage JD Tyler PA 1991 Deep-Sea Biology: A Natural History of Organisms at the Deep-Sea Floor Cambridge University Press Cambridge, UK
29. Goffredi SK Hurtado LA Hallam S Vrijenhoek RC 2003 Evolutionary relationships of deep-sea vent and cold seep clams (Mollusca: Vesicomyidae) of the 'pacifica/lepta' species complex Marine Biology 142 311 320
30. Grassle JF Sanders HL Smith WK 1979 Faunal changes with depth in the deep sea benthos Ambio Special Report 6 47 50
31. Helly J Levin LA 2004 Global distribution of naturally occurring marine hypoxia on continental margins Deep-Sea Research 51 1159 1168
32. Hensley RT Beardmore JA Tyler PA 1995 Genetic variance in Ophiomusium lymani (Ophiuroidea: Echinodermata) from lower bathyal depths in the Rockall Trough (northeast Atlantic) Marine Biology 121 469 475
33. Hessler RR Sanders HL 1967 Faunal diversity in the deep-sea Deep-Sea Research 14 65 78
34. Hogg NG 1983 A note on the deep sea circulation of the western North Atlantic: its nature and causes Deep-Sea ResearchPart A Oceanographic Research Papers 30 945 961
35. Howell KL Rogers AD Billet DSM Tyler PA 2004 Reproductive isolation among morphotypes of the Atlantic seastar species Zoroaster fulgens (Echinodermata: Asteroidea) Marine Biology 144 977 984
36. Jozefowicz CJ Ó Foighil D 1998 Phylogenetic analysis of Southern Hemisphere flat oysters based on partial mitochondrial 16S rDNA gene sequences Molecular Phylogenetics and Evolution 10 426 435
37. Knowlton N 2000 Molecular genetic analysis of species boundaries in the sea Hydrobiologia 420 73 90
38. Lapegue S Boutet I Leitao A et al. 2002 Trans-Atlantic distribution of a mangrove oyster species revealed by 16S mtDNA and karyological analyses Biological Bulletin of the Marine Biological Laboratory, Woods Hole 202 232 242
39. Lavender KL Davis RE Owens WB 2000 Mid-depth recirculation observed in the interior Labrador and Irminger Seas by direct velocity measurements Nature 407 66 69
40. Lavender KL Owens WB Davis RE 2005 The mid-depth circulation of the subpolar North Atlantic Ocean as measured by subsurface floats Deep-Sea Research I 52 767 785
41. Lee T Ó Foighil D 2004 Hidden Floridian biodiversity: mitochondrial and nuclear gene trees reveal four cryptic species within the scorched mussel, Brachidontes exustus, species complex Molecular Ecology 13 3527 3542
42. Legendre P Vaudor A 1991 The Royal PackageMultidimensional Analysis, Spatial Analysis Départment de sciences biologiques, Université de Montréal Montreal
43. Levin LA Etter RJ Rex MA et al. 2001 Environmental influences on regional deep-sea species diversity Annual Review of Ecology and Systematics 32 51 93
44. Macdonald AG 1975 Physiological Aspects of Deep-Sea Biology Cambridge University Press Cambridge, UK
45. Maciolek NJ Grassle JF Hecker B et al. 1987a Study of Biological Processes on the USMid-Atlantic Slope and RisePhase 2 Final report prepared for U S Department of Interior Minerals Management Service Washington, D.C
46. Maciolek NJ Grassle JF Hecker B et al. 1987b Study of Biological Processes on the US North Atlantic Slope and Rise Final report prepared for U S Department of Interior Minerals Management Service Washington, D.C
47. Mellor CA Paull CK 1994 Sea Beam bathymetry of the Manteo 467 Lease Block off Cape Hatteras, North Carolina Deep-Sea Research II 41 711 718
48. Metz EC Palumbi SR 1996 Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin Molecular Biology and Evolution 13 397 406
49. Mullineaux LS Speer KG Thurnherr AM Maltrud ME Vangriesheim A 2002 Implications of cross-axis flow for larval dispersal along mid-ocean ridges Cahiers de Biologie Marine 43 281 284
50. Ollitrault M de Verdière AC 2002 SOFAR floats reveal midlatitude intermediate North Atlantic general circulation. Part I: a lagrangian descriptive view Journal of Physical Oceanography 32 2020 2033
51. Palumbi SR 2004 Marine reserves and ocean neighborhoods: the spatial scale of marine populations and their management Annual Review of Environment and Resources 29 31 68
52. Palumbi SR Metz EC 1991 Strong reproductive isolation between closely related tropical sea urchins (genus Echinometra) Molecular Biology and Evolution 8 227 239
53. Pfenninger M Posada D 2002 Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact Evolution 56 1776 1788
54. Pickart RS 1992 Water mass components of the North Atlantic Deep Western Boundary Current Deep-Sea Research 39 1553 1572
55. Pineda J 1993 Boundary effects on the vertical ranges of deep-sea benthic species Deep-Sea Research 40 2179 2192
56. Podolsky RD 1994 Temperature and water viscosity: physiological versus mechanical effects on suspension feeding Science 265 100 103
57. Posada D Crandall KA Templeton AR 2000 geodis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes Molecular Ecology 9 487 488
58. Quattro JM Chase MR Rex MA Greig TW Etter RJ 2001 Extreme mitochondrial DNA divergence within populations of the deep-sea gastropod Frigidoalvania brychia Marine Biology 139 1107 1113
59. Rex MA 1981 Community structure in the deep-sea benthos Annual Review of Ecology and Systematics 12 331 353
60. Rex MA Warén A 1981 Evolution in the deep sea: taxonomic diversity of gastropod assemblages In Biology of Pacific Ocean Depths (ed Vinogradova NG pp 44 49 Far East Science Center, Academy of Sciences of the USSR Vladivostok
61. Rex MA McClain CR Johnson NA et al. 2005 A source-sink hypothesis for abyssal biodiversity American Naturalist 165 163 178
62. Rhind PM Allen JA 1992 Studies on the deep-sea Protobranchia (Bivalvia): the family Nuculidae Bulletin of the British Museum of Natural History (Zoology) 58 61 93
63. Riginos C Nachman MW 2001 Population subdivision in marine environments: the contributions of biogeography, geographical distance and discontinuous habitat to genetic differentiation in blennioid fish, Axoclinus nigricaudus Molecular Ecology 10 1439 1453
64. Rogers AD 2000 The role of oceanic oxygen minima in generating biodiversity in the deep sea Deep-Sea Research II 47 119 148
65. Romano SL Palumbi SR 1997 Molecular evolution of a portion of the mitochondrial 16S ribosomal gene region in scleractinian coral Journal of Molecular Evolution 45 397 411
66. Sanders HL Hessler RR Hampson GR 1965 An introduction to the study of deep-sea benthic faunal assemblages along the Gay Head-Bermuda transect Deep-Sea Research 12 845 867
67. Saunders PM 1983 Benthic observations on the Madeira Abyssal Plain: currents and dispersion Journal of Physical Oceanography 13 1416 1429
68. Schmitz WJ Jr. McCartney MS 1993 On the North Atlantic circulation Reviews in Geophysics 31 29 39
69. Schneider JA Ó Foighil D 1999 Phylogeny of giant clams (Cardiidae: Tridacninae) based on partial mitochondrial 16S rDNA sequences Molecular Phylogenetics and Evolution 13 59 66
70. Schneider S Roessli D Excoffier L 2000 arlequin: A software for population genetics data analysis Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva Geneva, Switzerland
71. Siebenaller JF 1978 Genetic variation in deep-sea invertebrate populations: the bathyal gastropod Bathybembix bairdii Marine Biology 47 265 275
72. Snelgrove PVR Smith CR 2002 A riot of species in an environmental calm: the paradox of the species-rich deep sea Oceanography and Marine Biology Annual Review 40 311 342
73. Somero GN 1990 Life at low volume change: hydrostatic pressure as a selective factor in the aquatic environment American Zoologist 30 123 135
74. Sparrow M Boebel O Zervakis V et al. 2002 Two circulation regimes of the Mediterranean outflow revealed by lagrangian measurements Journal of Physical Oceanography 32 1322 1330
75. Swofford DL 2000 paup (version 40b7a): Phylogenetic Analysis Using Parsimony (and Other Methods) Sinauer Associates Sunderland, Massachusetts
76. Templeton AR 1998 Nested clade analysis of phylogeographic data: testing hypotheses about gene flow and population history Molecular Ecology 7 381 397
77. Templeton AR 2004 Statistical phylogeography: methods of evaluating and minimizing inference errors Molecular Ecology 13 789 809
78. Templeton AR Routman E Phillips CA 1995 Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum Genetics 140 767 782
79. Therriault TW Docker MF Orlova MI Heath DD MacIsaaca HJ 2004 Molecular resolution of the family Dreissenidae (Mollusca: Bivalvia) with emphasis on Ponto-Caspian species, including first report of Mytilopsis leucophaeata in the Black Sea basin Molecular Phylogenetics and Evolution 30 479 489
80. Thomaz D Guiller A Clarke B 1996 Extreme divergence of mitochondrial DNA within species of pulmonate land snails Proceedings of the Royal Society of LondonSeries B, Biological Sciences 263 363 368
81. Tyler PA Young CM 1998 Temperature and pressure tolerances in dispersal stages of the genus Echinus (Echinodermata: Echinoidea). prerequisites for deep-sea invasion and speciation Deep-Sea Research Part II 45 253 278
82. Van Dover CL German CR Speer KG Parson LM Vrijenhoek RC 2002 Evolution and biogeography of deep-sea vent and seep invertebrates Science 295 1253 1257
83. Vollmer SV Palumbi SR 2004 Testing the utility of internally transcribed spacer sequences in coral phylogenies Molecular Ecology 9 763 772
84. Vrijenhoek RC 1997 Gene flow and genetic diversity in naturally fragmented metapopulations of deep-sea hydrothermal vent animals Journal of Heredity 88 285 293
85. White BN 1987 Oceanic anoxic events and allopatric speciation in the deep sea Biological Oceanography 5 243 259
86. Wilson GDF 1998 Historical influences on deep-sea isopod diversity in the Atlantic Ocean Deep-Sea Research 45 279 301
87. Wilson GDF Hessler RR 1987 Speciation in the deep sea Annual Review of Ecology and Systematics 18 185 207
88. Young CM Tyler PA Gage JD 1996 Vertical distribution correlates with embryonic pressure tolerances in the deep-sea asteroid Plutonaster bifrons Journal of the Marine Biological Association of the United Kingdom 76 749 757
89. Zardus JD 2002 Protobranch bivalves Advances in Marine Biology 42 1 65
90. Zardus JD Martel AL 2002 Phylum Mollusca: Bivalvia In Atlas of Marine Invertebrate Larvae (eds Young CM Sewell MA Rice ME pp 289 325 Academic Press
91. Zardus JD Morse MP 1998 Embryogenesis, morphology and ultrastructure of the pericalymma larva of Acila castrensis (Bivalvia: Protobranchia: Nuculoida) Invertebrate Biology 117 221 244