Genome sequence of an enhancin gene-rich nucleopolyhedovirus (NPV) from Agrotis segetum: Collinearity with Spodoptera exigua multiple NPV

Journal of General Virology

Volumn 87, Issue 3, 2006, Pages 537-551

  Jakubowska, Agata K ^a,b   Peters, Sanders A ^b   Ziemnicka, Jadwiga ^a   Vlak, Just M ^b   van Oers, Monique M ^b  

^a INSTITUTE OF PLANT PROTECTION NATIONAL RESEARCH INSTITUTE   (Poland)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACULOVIRUS; DNA ISOLATION; DNA SEQUENCE; GENE CLUSTER; GENE IDENTIFICATION; GENE ORDER; GENE SEQUENCE; GENOME ANALYSIS; MOTH; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRUS ISOLATION;

ANIMALS; BASE COMPOSITION; GENOME, VIRAL; LEPIDOPTERA; MOLECULAR SEQUENCE DATA; NUCLEOPOLYHEDROVIRUS; OPEN READING FRAMES; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPODOPTERA; VIRAL PROTEINS;

AGROTIS SEGETUM; AGROTIS SEGETUM NUCLEOPOLYHEDROVIRUS; CYPOVIRUS; LEPIDOPTERA; MAMESTRA; NUCLEOPOLYHEDROVIRUS; SPODOPTERA EXIGUA;

EID: 33644582732     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81461-0     Document Type: Article

References (62)

1. Afonso, C. L., Tulman, E. R., Lu, Z., Balinsky, C. A., Moser, B. A., Becnel, J. J., Rock, D. L. & Kutish, G. F. (2001). Genome sequence of a baculovirus pathogenic for Culex nigripalpus. J Virol 75, 11157-11165.
2. Ahrens, C. H. & Rohrmann, F. (1995). Replication of Orgyia pseudotsugata baculovirus DNA: lef-2 and ie-1 are essential and ie-2, p34, and Op-iap are stimulatory genes. Virology 212, 650-662.
3. Ahrens, C. H., Russell, R. L. Q., Funk, C. J., Evans, J. T., Harwood, S. H. & Rohrmann, G. F. (1997). The sequence of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus genome. Virology 229, 381-399.
4. Allaway, G. P. & Payne, C. C. (1983). A biochemical and biological comparison of three European isolates of nuclear polyhedrosis viruses from Agrotis segetum. Arch Virol 75, 43-54.
5. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
6. Ayres, M. D., Howard, S. C., Kuzio, J., Lopez-Ferber, M. & Possee, R. D. (1994). The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202, 586-605.
7. Bischoff, D. S. & Slavicek, J. M. (1997). Molecular analysis of an enhancin gene in the Lymantria dispar nuclear polyhedrosis virus. J Virol 71, 8133-8140.
8. Borodovsky, M. & McIninch, J. (1993). GeneMark: parallel gene recognition for both DNA strands. Comput Chem 17, 123-133.
9. Boughton, A. J., Harrison, R. L., Lewis, L. C. & Bonning, B. C. (1999). Characterization of a nucleopolyhedrovirus from the black cutworm, Agrotis ipsilon (Lepidoptera: Noctuidae). J Invertebr Pathol 74, 289-294.
10. Bourner, T. C. & Cory, J. S. (2004). Host range of an NPV and a GV isolated from the common cutworm, Agrotis segetum: pathogenicity within the cutworm complex. Biol Control 31, 372-379.
11. Bourner, T. C., Vargas-Osuna, E., Williams, T., Santiago Alvarez, C. & Cory, J. S. (1992). A comparison of the efficacy of nuclear polyhedrosis and granulosis viruses in spray and bait formulations for the control of Agrotis segetum (Lepidoptera: Noctuidae) in maize. Biocontrol Sci Technol 2, 315-326.
12. Bulach, D. M., Kumar, C. A., Zaia, A., Liang, B. & Tribe, D. E. (1999). Group II nucleopolyhedrovirus subgroups revealed by phylogenetic analysis of polyhedrin and DNA polymerase gene sequences. J Invertebr Pathol 73, 59-73.
13. Caballero, P., Vargas-Osuna, E. & Santiago-Alvarez, C. (1991). Efficacy of a Spanish strain of Agrotis segetum granulosis virus (Baculoviridae) against Agrotis segetum Schiff (Lep., Noctuidae) on corn. J Appl Entomol 112, 59-64.
14. Chen, X., Zhang, W. J., Wong, J. & 9 other authors (2002). Comparative analysis of the complete genome sequences of Helicoverpa zea and Helicoverpa armigera single-nucleocapsid nucleopolyhedroviruses. J Gen Virol 83, 673-684.
15. Clem, R. J. & Miller, L. K. (1994). Control of programmed cell death by the baculovirus genes p35 and iap. Mol Cell Biol 14, 5212-5222.
16. Cochran, M. A. & Faulkner, P. (1983). Location of homologous DNA sequences interspersed at five regions in the baculovirus AcMNPV genome. J Virol 45, 961-970.
17. de Jong, J. G., Lauzon, H. A. M., Dominy, C., Poloumienko, A., Carstens, E. B., Arif, B. M. & Krell, P. J. (2005). Analysis of the Choristoneura fumiferana nucleopolyhedrovirus genome. J Gen Virol 86, 929-943.
18. Derksen, A. C. G. & Granados, R. R. (1988). Alteration of a lepidopteran peritrophic membrane by baculoviruses and enhancement of viral infectivity. Virology 167, 242-250.
19. Federici, B. A. (1999). Naturally occurring baculoviruses for insect pest control. Methods Biotechnol 5, 301-320.
20. Friesen, P. D. & Miller, L. K. (1987). Divergent transcription of early 35- and 94-kilodalton protein genes encoded by the HindIII K genome fragment of the baculovirus Autographa californica nuclear polyhedrosis virus. J Virol 61, 2264-2272.
21. Guarino, L. A. & Summers, M. D. (1986). Functional mapping of a trans-activating gene required for expression of a baculovirus delayed-early gene. J Virol 57, 563-571.
22. Guarino, L. A., Gonzales, M. A. & Summers, M. D. (1986). Complete sequence and enhancer function of the homologous DNA regions of Autographa californica nuclear polyhedrosis virus. J Virol 60, 224-229.
23. Hayakawa, T., Ko, R., Okano, K., Seong, S.-I., Goto, C. & Maeda, S. (1999). Sequence analysis of the Xestia c-nigrum granulovirus genome. Virology 262, 277-297.
24. Herniou, E. A., Luque, T., Chen, X., Vlak, J. M., Winstanley, D., Cory, J. S. & O'Reilly, D. R. (2001). Use of whole genome sequence data to infer baculovirus phylogeny. J Virol 75, 8117-8126.
25. Herniou, E. A., Olszewski, J., Cory, J. S. & O'Reilly, D. R. (2003). The genome sequence and evolution of baculoviruses. Annu Rev Entomol 48, 211-234.
26. Hu, Z. H., Arif, B. M., Jin, F., Martens, J. W. M., Chen, X. W., Sun, J. S., Zuidema, D., Goldbach, R. W. & Vlak, J. M. (1998). Distinct gene arrangement in the Buzura suppressaria single-nucleocapsid nucleopolyhedrovirus genome. J Gen Virol 79, 2841-2851.
27. Hyink, O., Dellow, R. A., Olsen, M. J., Caradoc-Davies, K. M. B., Drake, K., Herniou, E. A., Cory, J. S., O'Reilly, D. R. & Ward, V. K. (2002). Whole genome analysis of the Epiphyas postvittana nucleopolyhedrovirus. J Gen Virol 83, 957-971.
28. Ignoffo, C. M. & Garcia, C. (1979). Susceptibility of larvae of the black cutworm to species of entomopathogenic bacteria, fungi, protozoa, and viruses. J Econ Entomol 72, 767-769.
29. IJkel, W. F. J., van Strien, E. A., Heldens, J. G. M., Broer, R., Zuidema, D., Goldbach, R. W. & Vlak, J. M. (1999). Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome. J Gen Virol 80, 3289-3304.
30. IJkel, W. F. J., Lebbink, R.-J., Op den Brouw, M. L., Goldbach, R. W., Vlak, J. M. & Zuidema, D. (2001). Identification of a novel occlusion derived virus-specific protein in Spodoptera exigua multicapsid nucleopolyhedrovirus. Virology 284, 170-181.
31. Jakubowska, A., van Oers, M. M., Ziemnicka, J., Lipa, J. J. & Vlak, J. M. (2005). Molecular characterization of Agrotis segetum nucleopolyhedrovirus from Poland. J Invertebr Pathol 90, 64-68.
32. Kool, M., Ahrens, C. H., Vlak, J. M. & Rohrmann, G. F. (1995). Replication of baculovirus DNA. J Gen Virol 76, 2103-2118.
33. Kuzio, J., Pearson, M. N., Harwood, S. H., Funk, C. J., Evans, J. T., Slavicek, J. M. & Rohrmann, G. F. (1999). Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar. Virology 253, 17-34.
34. Lange, M. & Jehle, J. A. (2003). The genome of the Cryptophlebia leucotreta granulovirus. Virology 317, 220-236.
35. Lepore, L. S., Roelvink, P. R. & Granados, R. R. (1996). Enhancin, the granulosis virus protein that facilitates nucleopolyhedrovirus (NPV) infections, is a metalloprotease. J Invertebr Pathol 68, 131-140.
36. Li, L., Donly, C., Li, Q., Willis, L. G., Keddie, B. A., Erlandson, M. A. & Theilmann, D. A. (2002a). Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata. Virology 297, 226-244.
37. Li, Q., Donly, C., Li, L., Willis, L. G., Theilmann, D. A. & Erlandson, M. (2002b). Sequence and organization of the Mamestra configurata nucleopolyhedrovirus genome. Virology 294, 106-121.
38. Li, Q., Li, L., Moore, K., Donly, C., Theilmann, D. A. & Erlandson, M. (2003). Characterization of Mamestra configurata nucleopolyhedrovirus enhancin and its functional analysis via expression in an Autographa californica M nucleopolyhedrovirus recombinant. J Gen Virol 84, 123-132.
39. Li, L., Li, Q., Willis, L. G., Erlandson, M., Theilmann, D. A. & Donly, C. (2005). Complete comparative genomic analysis of two field isolates of Mamestra configurata nucleopolyhedrovirus-A. J Gen Virol 86, 91-105.
40. Luque, T., Finch, R., Crook, N., O'Reilly, D. R. & Winstanley, D. (2001). The complete sequence of the Cydia pomonella granulovirus genome. J Gen Virol 82, 2531-2547.
41. Pang, Y., Yu, J., Wang, L. & 7 other authors (2001). Sequence analysis of the Spodoptera litura multicapsid nucleopolyhedrovirus genome. Virology 287, 391-404.
42. Pearson, M., Bjornson, R., Pearson, G. & Rohrmann, G. (1992). The Autographa californica baculovirus genome: evidence for multiple replication origins. Science 257, 1382-1384.
43. Popham, H. J. R., Bischoff, D. S. & Slavicek, J. M. (2001). Both Lymantria dispar nucleopolyhedrovirus enhancin genes contribute to viral potency. J Virol 75, 8639-8648.
44. Rawlings, N. D. & Barrett, A. J. (1995). Evolutionary families of metallopeptidases. Methods Enzymol 248, 183-228.
45. Reed, C., Otvos, I. S., Reardon, R., Ragenovich, I. & Williams, H. L. (2003). Effects of long-term storage on the stability of OpMNPV DNA contained in TM Biocontrol-1. J Invertebr Pathol 84, 104-113.
46. Roelvink, P. W., Corsaro, B. G. & Granados, R. R. (1995). Characterization of the Helicoverpa armigera and Pseudaletia unipuncta granulovirus enhancin genes. J Gen Virol 76, 2693-2705.
47. Slavicek, J. M. & Popham, H. J. R. (2005). The Lymantria dispar nucleopolyhedrovirus enhancins are components of occlusion-derived virus. J Virol 79, 10578-10588.
48. Swofford, D. L. (2003). PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sunderland, MA: Sinauer Associates.
49. Tanada, Y. (1985). A synopsis of studies on the synergistic property of an insect baculovirus: a tribute to Edward A. Steinhaus. J Invertebr Pathol 45, 125-138.
50. Tanada, Y. & Hukuhara, T. (1971). Enhanced infection of a nuclearpolyhedrosis virus in larvae of the armyworm, Pseudaletia unipuncta, by a factor in the capsule of a granulosis virus. J Invertebr Pathol 17, 116-126.
51. Theilmann, D. A., Blissard, G. W., Bonning, B., Jehle, J., O'Reilly, D. R., Rohrman, G. F., Thiem, S. & Vlak, J. M. (2005). Family Baculoviridae. In Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses, pp. 177-185. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. London: Elsevier.
52. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
53. van Oers, M. M., Abma-Henkens, M. H. C., Herniou, E. A., de Groot, J. C. W., Peters, S. & Vlak, J. M. (2005). Genome sequence of Chrysodeixis chalcites nucleopolyhedrovirus, a baculovirus with two DNA photolyase genes. J Gen Virol 86, 2069-2080.
54. Vlak, J. M. & Smith, G. E. (1982). Orientation of the genome of Autographa californica nuclear polyhedrosis virus: a proposal. J Virol 41, 1118-1121.
55. Volkman, L. E., Blissard, G. W., Friesen, P., Keddie, B. A., Possee, R. & Theilmann, D. A. (1995). Family Baculoviridae. In Virus Taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses, pp. 104-113. Edited by F. A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo & M. D. Summers. Vienna: Springer.
56. Wang, P., Hammer, D. A. & Granados, R. R. (1994). Interaction of Trichoplusia ni granulosis virus-encoded enhancin with the midgut epithelium and peritrophic membrane of four lepidopteran insects. J Gen Virol 75, 1961-1967.
57. Wang, J. W., Qi, Y. P., Huang, Y. X. & Li, S. D. (1995). Nucleotide sequence of a 1446 base pair SalI fragment and structure of a novel early gene of Leucania separata nuclear polyhedrosis virus. Arch Virol 140, 2283-2291.
58. Wang, P., Hammer, D. A. & Granados, R. R. (1997). Binding and fusion of Autographa californica nucleopolyhedrovirus to cultured insect cells. J Gen Virol 78, 3081-3089.
59. Willis, L. G., Siepp, R., Stewart, T. M., Erlandson, M. A. & Theilmann, D. A. (2005). Sequence analysis of the complete genome of Trichoplusia ni single nucleopolyhedrovirus and the identification of a baculoviral photolyase gene. Virology 338, 209-226.
60. Wormleaton, S., Kuzio, J. & Winstanley, D. (2003). The complete sequence of the Adoxophyes orana granulovirus genome. Virology 311, 350-365.
61. Yamamoto, T. & Tenade, Y. (1980). Physiochemical properties and location of capsule components, in particular the synergistic factor, in the occlusion body of a granulosis virus of the armyworm, Pseudaletia unipuncta. Virology 107, 434-440.
62. Zhu, Y., Hukuhara, T. & Tamura, K. (1989). Location of a synergistic factor in the capsule of a granulosis virus of the armyworm, Pseudaletia unipuncta. J Invertebr Pathol 54, 49-56.