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Volumn 52, Issue 3, 2006, Pages 361-369

Determination of SMN1/SMN2 gene dosage by a quantitative genotyping platform combining capillary electrophoresis and MALDI-TOF mass spectromy

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAPILLARY ELECTROPHORESIS; CLINICAL ARTICLE; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; GENE DOSAGE; GENE IDENTIFICATION; GENETIC COUNSELING; GENETIC LINKAGE; GENOTYPE; HEREDITARY SPINAL MUSCULAR ATROPHY; HETEROZYGOTE; HUMAN; HUMAN GENOME; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PINPOINT ASSAY; QUANTITATIVE ASSAY; SMN1 GENE; SMN2 GENE;

EID: 33644505172     PISSN: 00099147     EISSN: None     Source Type: Journal    
DOI: 10.1373/clinchem.2005.061192     Document Type: Article
Times cited : (24)

References (33)
  • 1
    • 0018906764 scopus 로고
    • Classification of spinal muscular atrophies
    • Pearn J. Classification of spinal muscular atrophies. Lancet 1980;1:919-22.
    • (1980) Lancet , vol.1 , pp. 919-922
    • Pearn, J.1
  • 2
    • 0028200804 scopus 로고
    • De novo and inherited deletions of the 5q13 region in spinal muscular atrophies
    • Melki J, Lefebvre S, Burglen L, Burlet P, Clermont O, Millasseau P, et al. De novo and inherited deletions of the 5q13 region in spinal muscular atrophies. Science 1994;264:1474-7.
    • (1994) Science , vol.264 , pp. 1474-1477
    • Melki, J.1    Lefebvre, S.2    Burglen, L.3    Burlet, P.4    Clermont, O.5    Millasseau, P.6
  • 3
    • 0034026614 scopus 로고    scopus 로고
    • SMA carrier testing-validation of hemizygous SMN exon 7 deletion test for the identification of proximal spinal muscular atrophy carriers and patients with a single allele deletion
    • Scheffer H, Cobben JM, Mensink RG, Stulp RP, van der Steege G, Buys CH. SMA carrier testing-validation of hemizygous SMN exon 7 deletion test for the identification of proximal spinal muscular atrophy carriers and patients with a single allele deletion. Eur J Hum Genet 2000;8:79-86.
    • (2000) Eur J Hum Genet , vol.8 , pp. 79-86
    • Scheffer, H.1    Cobben, J.M.2    Mensink, R.G.3    Stulp, R.P.4    Van Der Steege, G.5    Buys, C.H.6
  • 4
    • 0028904953 scopus 로고
    • Natural history in proximal spinal muscular atrophy: Clinical analysis of 445 patients and suggestions for a modification of existing classifications
    • Zerres K, Rudnik-Schoneborn S. Natural history in proximal spinal muscular atrophy: clinical analysis of 445 patients and suggestions for a modification of existing classifications. Arch Neurol 1995;52:518-23.
    • (1995) Arch Neurol , vol.52 , pp. 518-523
    • Zerres, K.1    Rudnik-Schoneborn, S.2
  • 5
    • 0033033434 scopus 로고    scopus 로고
    • A single nucleotide in the SMN gene regulates splicing and is responsible for spinal muscular atrophy
    • Lorson CL, Hahnen E, Androphy EJ, Wirth B. A single nucleotide in the SMN gene regulates splicing and is responsible for spinal muscular atrophy. Proc Natl Acad Sci U S A 1999;96:6307-11.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 6307-6311
    • Lorson, C.L.1    Hahnen, E.2    Androphy, E.J.3    Wirth, B.4
  • 6
    • 0032799998 scopus 로고    scopus 로고
    • A single nucleotide difference that alters splicing patterns distinguishes the SMA gene SMN1 from the copy gene SMN2
    • Monani UR, Lorson CL, Parsons DW, Prior TW, Androphy EJ, Burghes AH, et al. A single nucleotide difference that alters splicing patterns distinguishes the SMA gene SMN1 from the copy gene SMN2. Hum Mol Genet 1999;8:1177-83.
    • (1999) Hum Mol Genet , vol.8 , pp. 1177-1183
    • Monani, U.R.1    Lorson, C.L.2    Parsons, D.W.3    Prior, T.W.4    Androphy, E.J.5    Burghes, A.H.6
  • 7
    • 0033358719 scopus 로고    scopus 로고
    • Quantitative analysis of survival motor neuron copies: Identification of subtle SMN1 mutations in patients with spinal muscular atrophy, genotype-phenotype correlation, and implications for genetic counseling
    • Wirth B, Herz M, Wetter A, Moskau S, Hahnen E, Rudnik-Schoneborn S, et al. Quantitative analysis of survival motor neuron copies: identification of subtle SMN1 mutations in patients with spinal muscular atrophy, genotype-phenotype correlation, and implications for genetic counseling. Am J Hum Genet 1999;64:1340-56.
    • (1999) Am J Hum Genet , vol.64 , pp. 1340-1356
    • Wirth, B.1    Herz, M.2    Wetter, A.3    Moskau, S.4    Hahnen, E.5    Rudnik-Schoneborn, S.6
  • 8
    • 0030863569 scopus 로고    scopus 로고
    • When is a deletion not a deletion? When it is converted
    • Burghes AH. When is a deletion not a deletion? When it is converted. Am J Hum Genet 1997;61:9-15.
    • (1997) Am J Hum Genet , vol.61 , pp. 9-15
    • Burghes, A.H.1
  • 9
    • 0033609804 scopus 로고    scopus 로고
    • Duplications and de novo deletions of the SMNt gene demonstrated by fluorescence-based carrier testing for spinal muscular atrophy
    • Chen KL, Wang YL, Rennert H, Joshi I, Mills JK, Leonard DG, et al. Duplications and de novo deletions of the SMNt gene demonstrated by fluorescence-based carrier testing for spinal muscular atrophy. Am J Med Genet 1999;85:463-9.
    • (1999) Am J Med Genet , vol.85 , pp. 463-469
    • Chen, K.L.1    Wang, Y.L.2    Rennert, H.3    Joshi, I.4    Mills, J.K.5    Leonard, D.G.6
  • 10
    • 0036154959 scopus 로고    scopus 로고
    • Quantitative analyses of SMN1 and SMN2 based on real-time lightCycler PCR: Fast and highly reliable carrier testing and prediction of severity of spinal muscular atrophy
    • Feldkotter M, Schwarzer V, Wirth R, Wienker TF, Wirth B. Quantitative analyses of SMN1 and SMN2 based on real-time lightCycler PCR: fast and highly reliable carrier testing and prediction of severity of spinal muscular atrophy. Am J Hum Genet 2002;70:358-68.
    • (2002) Am J Hum Genet , vol.70 , pp. 358-368
    • Feldkotter, M.1    Schwarzer, V.2    Wirth, R.3    Wienker, T.F.4    Wirth, B.5
  • 12
    • 0037262155 scopus 로고    scopus 로고
    • DNA fragment analysis by an affordable multiple-channel capillary electrophoresis system
    • Liu MS, Amirkhanian VD. DNA fragment analysis by an affordable multiple-channel capillary electrophoresis system. Electrophoresis 2003;24:93-5.
    • (2003) Electrophoresis , vol.24 , pp. 93-95
    • Liu, M.S.1    Amirkhanian, V.D.2
  • 13
    • 0038217407 scopus 로고    scopus 로고
    • From gels to chips: "minisequencing" primer extension for analysis of point mutations and single nucleotide polymorphisms
    • Syvanen AC. From gels to chips: "minisequencing" primer extension for analysis of point mutations and single nucleotide polymorphisms. Hum Mutat 1999;13:1-10.
    • (1999) Hum Mutat , vol.13 , pp. 1-10
    • Syvanen, A.C.1
  • 14
    • 0035059012 scopus 로고    scopus 로고
    • Combine-ARMS: A rapid and cost-effective protocol for molecular characterization of β-thalassemia in Malaysia
    • Tan KL, Tan JA, Wong YC, Wee YC, Thong MK, Yap SF. Combine-ARMS: a rapid and cost-effective protocol for molecular characterization of β-thalassemia in Malaysia. Genet Test 2001;5:17-22.
    • (2001) Genet Test , vol.5 , pp. 17-22
    • Tan, K.L.1    Tan, J.A.2    Wong, Y.C.3    Wee, Y.C.4    Thong, M.K.5    Yap, S.F.6
  • 15
    • 0142227011 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in clinical chemistry
    • Marvin LF, Roberts MA, Fay LB. Matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry in clinical chemistry. Clin Chim Acta 2003;337:11-21.
    • (2003) Clin Chim Acta , vol.337 , pp. 11-21
    • Marvin, L.F.1    Roberts, M.A.2    Fay, L.B.3
  • 16
    • 0032519905 scopus 로고    scopus 로고
    • Automated high-throughput mass spectrometric analysis of synthetic oligonucleotides
    • Van Ausdall DA, Marshall WS. Automated high-throughput mass spectrometric analysis of synthetic oligonucleotides. Anal Biochem 1998;256:220-8.
    • (1998) Anal Biochem , vol.256 , pp. 220-228
    • Van Ausdall, D.A.1    Marshall, W.S.2
  • 17
    • 0011729715 scopus 로고    scopus 로고
    • Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry
    • Paracchini S, Arredi B, Chalk R, Tyler-Smith C. Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry. Nucleic Acids Res 2002;30:e27.
    • (2002) Nucleic Acids Res , vol.30
    • Paracchini, S.1    Arredi, B.2    Chalk, R.3    Tyler-Smith, C.4
  • 18
    • 0038361169 scopus 로고    scopus 로고
    • A standard protocol for single nucleotide primer extension in the human genome using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Wise CA, Paris M, Morar B, Wang W, Kalaydjieva L, Bittles AH. A standard protocol for single nucleotide primer extension in the human genome using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 2003;17:1195-202.
    • (2003) Rapid Commun Mass Spectrom , vol.17 , pp. 1195-1202
    • Wise, C.A.1    Paris, M.2    Morar, B.3    Wang, W.4    Kalaydjieva, L.5    Bittles, A.H.6
  • 19
    • 0033818174 scopus 로고    scopus 로고
    • Quantitative approach to single-nucleotide polymorphism analysis using MALDI-TOF mass spectrometry
    • Ross P, Hall L, Haff LA. Quantitative approach to single-nucleotide polymorphism analysis using MALDI-TOF mass spectrometry. Biotechniques 2000;29:620-6, 8-9.
    • (2000) Biotechniques , vol.29 , pp. 620-626
    • Ross, P.1    Hall, L.2    Haff, L.A.3
  • 20
    • 17844393903 scopus 로고    scopus 로고
    • Parallel minisequencing followed by multiplex matrix-assisted laser desorption/ionization mass spectrometry assay for β-thalassemia mutations
    • Liao HK, Su YN, Kao HY, Hung CC, Wang HT, Chen YJ. Parallel minisequencing followed by multiplex matrix-assisted laser desorption/ionization mass spectrometry assay for β-thalassemia mutations. J Hum Genet 2005;50:139-50.
    • (2005) J Hum Genet , vol.50 , pp. 139-150
    • Liao, H.K.1    Su, Y.N.2    Kao, H.Y.3    Hung, C.C.4    Wang, H.T.5    Chen, Y.J.6
  • 21
    • 0032103987 scopus 로고    scopus 로고
    • MALDI-TOF mass spectrometric typing of single nucleotide polymorphisms with mass-tagged ddNTPs
    • Fei Z, Ono T, Smith LM. MALDI-TOF mass spectrometric typing of single nucleotide polymorphisms with mass-tagged ddNTPs. Nucleic Acids Res 1998;26:2827-8.
    • (1998) Nucleic Acids Res , vol.26 , pp. 2827-2828
    • Fei, Z.1    Ono, T.2    Smith, L.M.3
  • 22
    • 0031734601 scopus 로고    scopus 로고
    • High level multiplex genotyping by MALDI-TOF mass spectrometry
    • Ross P, Hall L, Smirnov I, Haff L. High level multiplex genotyping by MALDI-TOF mass spectrometry. Nat Biotechnol 1998;16:1347-51.
    • (1998) Nat Biotechnol , vol.16 , pp. 1347-1351
    • Ross, P.1    Hall, L.2    Smirnov, I.3    Haff, L.4
  • 23
    • 0030890116 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism identification assays using a thermostable DNA polymerase and delayed extraction MALDI-TOF mass spectrometry
    • Haff LA, Smirnov IP. Single-nucleotide polymorphism identification assays using a thermostable DNA polymerase and delayed extraction MALDI-TOF mass spectrometry. Genome Res 1997;7:378-88.
    • (1997) Genome Res , vol.7 , pp. 378-388
    • Haff, L.A.1    Smirnov, I.P.2
  • 24
    • 0033564153 scopus 로고    scopus 로고
    • Mass spectrometry in DNA analysis
    • Guo B. Mass spectrometry in DNA analysis. Anal Chem 1999;71:333R-7R.
    • (1999) Anal Chem , vol.71
    • Guo, B.1
  • 25
    • 0032831045 scopus 로고    scopus 로고
    • Four common mutations of the cystathionine β-synthase gene detected by multiplex PCR and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Harksen A, Ueland PM, Refsum H, Meyer K. Four common mutations of the cystathionine β-synthase gene detected by multiplex PCR and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Clin Chem 1999;45:1157-61.
    • (1999) Clin Chem , vol.45 , pp. 1157-1161
    • Harksen, A.1    Ueland, P.M.2    Refsum, H.3    Meyer, K.4
  • 26
    • 0038723182 scopus 로고    scopus 로고
    • Determination of SMN1 and SMN2 copy number using TaqMan technology
    • Anhuf D, Eggermann T, Rudnik-Schoneborn S, Zerres K. Determination of SMN1 and SMN2 copy number using TaqMan technology. Hum Mutat 2003;22:74-8.
    • (2003) Hum Mutat , vol.22 , pp. 74-78
    • Anhuf, D.1    Eggermann, T.2    Rudnik-Schoneborn, S.3    Zerres, K.4
  • 27
    • 4544366844 scopus 로고    scopus 로고
    • Rapid detection of FGFR3 gene mutation in achondroplasia by DHPLC system-coupling heteroduplex and fluorescence-enhanced primer-extension analysis
    • Su YN, Lee CN, Chien SC, Hung CC, Chien YH, Chen CA. Rapid detection of FGFR3 gene mutation in achondroplasia by DHPLC system-coupling heteroduplex and fluorescence-enhanced primer-extension analysis. J Hum Genet 2004;49:399-403.
    • (2004) J Hum Genet , vol.49 , pp. 399-403
    • Su, Y.N.1    Lee, C.N.2    Chien, S.C.3    Hung, C.C.4    Chien, Y.H.5    Chen, C.A.6
  • 28
    • 0033850254 scopus 로고    scopus 로고
    • Genotype determination at the survival motor neuron locus in a normal population and SMA carriers using competitive PCR and primer extension
    • Gerard B, Ginet N, Matthijs G, Evrard P, Baumann C, Da Silva F, et al. Genotype determination at the survival motor neuron locus in a normal population and SMA carriers using competitive PCR and primer extension. Hum Mutat 2000;16:253-63.
    • (2000) Hum Mutat , vol.16 , pp. 253-263
    • Gerard, B.1    Ginet, N.2    Matthijs, G.3    Evrard, P.4    Baumann, C.5    Da Silva, F.6
  • 29
    • 0036449356 scopus 로고    scopus 로고
    • Implementation of SMA carrier testing in genetic laboratories: Comparison of two methods for quantifying the SMN1 gene
    • Cusco I, Barcelo MJ, Baiget M, Tizzano EF. Implementation of SMA carrier testing in genetic laboratories: comparison of two methods for quantifying the SMN1 gene. Hum Mutat 2002;20:452-9.
    • (2002) Hum Mutat , vol.20 , pp. 452-459
    • Cusco, I.1    Barcelo, M.J.2    Baiget, M.3    Tizzano, E.F.4
  • 30
    • 0028241481 scopus 로고
    • Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids
    • Southern EM, Case-Green SC, Elder JK, Johnson M, Mir KU, Wang L, et al. Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids. Nucleic Acids Res 1994;22:1368-73.
    • (1994) Nucleic Acids Res , vol.22 , pp. 1368-1373
    • Southern, E.M.1    Case-Green, S.C.2    Elder, J.K.3    Johnson, M.4    Mir, K.U.5    Wang, L.6
  • 33
    • 0346502172 scopus 로고    scopus 로고
    • Spinal muscular atrophy: Molecular genetics and diagnostics
    • Ogino S, Wilson RB. Spinal muscular atrophy: molecular genetics and diagnostics. Expert Rev Mol Diagn 2004;4:15-29.
    • (2004) Expert Rev Mol Diagn , vol.4 , pp. 15-29
    • Ogino, S.1    Wilson, R.B.2


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