A standard protocol for single nucleotide primer extension in the human genome using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Rapid Communications in Mass Spectrometry

Volumn 17, Issue 11, 2003, Pages 1195-1202

  Wise, Cheryl A ^a   Paris, Maxime ^c   Morar, Bharti ^a   Wang, Wei ^a   Kalaydjieva, Luba ^a,b   Bittles, Alan H ^a  

^a EDITH COWAN UNIVERSITY   (Australia)

^b UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^c MURDOCH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; COST EFFECTIVENESS; DESORPTION; MASS SPECTROMETRY; MATRIX ALGEBRA; NUCLEOTIDES;

GENETIC POPULATION; HUMAN GENOMES; MATRIX-ASSISTED LASER DESORPTION/IONIZATION-TIME-OF-FLIGHT MASS SPECTROMETRY; MEDICAL GENETICS; POLYMORPHISM ANALYSIS; POPULATION GENETICS; PRIMER EXTENSION; SINGLE NUCLEOTIDE POLYMORPHISMS; SINGLE NUCLEOTIDES; STANDARD PROTOCOLS;

HIGH PERFORMANCE LIQUID CHROMATOGRAPHY;

NUCLEOTIDE;

ARTICLE; BIOTECHNOLOGY; FORENSIC SCIENCE; GENETIC MARKER; GENOTYPE; HEMIZYGOTE; HETEROZYGOTE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HOMOZYGOTE; HUMAN; HUMAN GENOME; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEDICAL GENETICS; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM; Y CHROMOSOME;

EID: 0038361169     PISSN: 09514198     EISSN: None     Source Type: Journal    
DOI: 10.1002/rcm.1038     Document Type: Article

References (44)

1. Wang DG, Fan JB, Siao CJ, et al. Science 1998; 280: 1077.
2. McCarthy JJ, Hilfiker R. Nat. Biotechnol. 2000; 18: 505.
3. Underhill PA, Shen P, Lin AA, et al. Nat. Genet. 2000; 26: 358.
4. Jobling MA. Forensic Sci. Int. 2001; 118: 158.
5. Brookes AJ. Eur. J. Hum. Genet. 2002; 10: 153.
6. Gut IG. Hum. Mutat. 2001; 17: 475.
7. Kristensen VN, Kelefiotis D, Kristensen T, Borresen-Dale AL. Biotechniques 2001; 30: 318.
8. Kwok P-Y. Annu. Rev. Genomics Hum. Genet. 2001; 2: 235.
9. Shi MM. Clin. Chem. 2001; 47: 164.
10. Latif S, Bauer-Sardina I, Ranade K, Livak KJ, Kwok P-Y. Genome Res. 2001; 11: 436.
11. Ranade K, Chang MS, Ting CT, et al. Genome Res. 2001; 11: 1262.
12. Lyamichev V, Mast AL, Hall JG, et al. Nat. Biotechnol. 1999; 17: 292.
13. Mein CA, Barrat BJ, Dunn MG, et al. Genome Res. 2000; 10: 330.
14. Hsu TM, Law SM, Duan S, Neri BP, Kwok P-Y. Clin. Chem. 2001; 47: 1373.
15. Premstaller A, Oberacher H, Rickert A, Huber CG, Oefner PJ. Genomics 2002; 79: 793.
16. Barta C, Ronai Z, Sasvari-Szekely M, Guttman A. Electrophoresis 2001; 22: 779.
17. Matyas G, Giunta C, Steinmann B, Hossle JP, Hellwig R. Hum. Mutat. 2002; 19: 58.
18. Hacia JG. Nat. Genet. 1999; 21: 42.
19. Pastinen T, Raitio M, Lindroos K, Tainola P, Peltonen L, Syvänen A-C. Genome Res. 2000; 10: 1031.
20. Griffin TJ, Smith LM. Trends Biotechnol. 2000; 18: 77.
21. Bray MS, Boerwinkle E, Doris PA. Hum. Mutat. 2001; 17: 296.
22. Buetow KH, Edmonson M, MacDonald R, et al. Proc. Natl. Acad. Sci. USA 2001; 98: 581.
23. Lechner D, Lathrop GM, Gut IG. Curr. Opin. Chem. Biol. 2002; 6: 31.
24. Haff LA, Smirnov IP. Genome Res. 1997; 7: 378.
25. Syvänen A-C. Hum. Mutat. 1999; 13: 1.
26. Fei Z, Smith LM. Rapid Commun. Mass Spectrom. 2000; 14: 950.
27. Ross P, Hall L, Smirnov IP, Haff LA. Nat. Biotechnol. 1998; 16: 1347.
28. Paracchini S, Arredi B, Chalk R, Tyler-Smith C. Nucleic Acids Res. 2002; 30: E27.
29. Abicht A, Stucka R, Karcagi V, et al. Neurology 1999; 53: 1564.
30. Kalaydjieva L, Perez-Lezaun A, Angelicheva D, et al. Am. J. Hum. Genet. 1999; 65: 1299.
31. Kalaydjieva L, Gresham D, Gooding R, et al. Am. J. Hum. Genet. 2000; 67: 47.
32. Piccolo F, Jeanpierre M, Leturcq F, et al. Hum. Mol. Genet. 1996; 5: 2019.
33. Gresham D, Morar B, Underhill PA, et al. Am. J. Hum. Genet. 2001; 69: 1314.
34. Underhill P, Passarino G, Lin AA, Shen P, Lahr MM, Foley RA, Oefner PJ, Cavalli-Sforza LL. Ann. Hum. Genet. 2001; 65: 43.
35. Sun X, Ding H, Hung K, Guo B. Nucleic Acids Res. 2000; 28: E68.
36. Pusch W, Kraeuter KO, Froehlich T, Stalgies Y, Kostrzewa M. Biotechniques 2001; 30: 210.
37. Li J, Butler JM, Tan Y, et al. Electrophoresis 1999; 20: 1258.
38. Hsu TM, Chen X, Duan S, Miller RD, Kwok P-Y. Biotechniques 2001; 31: 560.
39. Smirnov IP, Hall LR, Ross PL, Haff LA. Rapid Commun. Mass. Spectrom. 2001; 15: 1427.
40. Rodi CP, Darnhofer-Patel B, Stanssens P, Zabeau M, van den Boom D. Biotechniques 2002; Suppl: 62.
41. Haff LA, Smirnov IP. Nucleic Acids Res. 1997; 25: 3749.
42. Kim Y, Hurst GB, Doktycz MJ, Buchanan MV. Anal. Chem. 2001; 73: 2617.
43. Antonarakis SE, Group TNW. Hum. Mutat. 1998; 11: 1.
44. den Dunnen JT, Antonarakis SE. Hum. Mutat. 2000; 15: 7.