메뉴 건너뛰기




Volumn 43, Issue 30, 2004, Pages 9918-9925

Thermodynamic stability of DNA tandem mismatches

Author keywords

[No Author keywords available]

Indexed keywords

DIFFERENTIAL SCANNING CALORIMETRY; MELTING; SPECIFIC HEAT; THERMODYNAMIC STABILITY; ULTRAVIOLET RADIATION;

EID: 3343007156     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049161w     Document Type: Article
Times cited : (9)

References (18)
  • 1
    • 0026409841 scopus 로고
    • Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo
    • Cayley, S., Lewis, B. A., Guttman, H. J., and Record, M. T., Jr. (1991) Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo, J. Mol. Biol. 222, 281-300.
    • (1991) J. Mol. Biol. , vol.222 , pp. 281-300
    • Cayley, S.1    Lewis, B.A.2    Guttman, H.J.3    Record Jr., M.T.4
  • 2
    • 0033529318 scopus 로고    scopus 로고
    • A more unified picture for the thermodynamics of nucleic acid duplex melting: A characterization by calorimetric and volumetric techniques
    • Chalikian, T. V., Volker, J., Plum, G. E., and Breslauer, K. J. (1999) A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques, Proc. Natl. Acad. Sci. U.S.A. 96, 7853-7858.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 7853-7858
    • Chalikian, T.V.1    Volker, J.2    Plum, G.E.3    Breslauer, K.J.4
  • 3
    • 0028945546 scopus 로고
    • Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes
    • Gray, D. M., Hung, S. H., and Johnson, K. H. (1995) Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes, Methods Enzymol. 246, 19-34.
    • (1995) Methods Enzymol. , vol.246 , pp. 19-34
    • Gray, D.M.1    Hung, S.H.2    Johnson, K.H.3
  • 4
    • 0033614819 scopus 로고    scopus 로고
    • Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: Interpretation in terms of coupled processes of formation and association of single-stranded helices
    • Holbrook, J. A., Capp, M. W., Saecker, R. M., and Record, M. T., Jr. (1999) Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices, Biochemistry 38, 8409-8422.
    • (1999) Biochemistry , vol.38 , pp. 8409-8422
    • Holbrook, J.A.1    Capp, M.W.2    Saecker, R.M.3    Record Jr., M.T.4
  • 5
    • 0029800922 scopus 로고    scopus 로고
    • n repeats form intramolecular hairpins stabilized by different base-pairing interactions
    • n repeats form intramolecular hairpins stabilized by different base-pairing interactions, Biochemistry 35, 13125-13135.
    • (1996) Biochemistry , vol.35 , pp. 13125-13135
    • Huertas, D.1    Azorin, F.2
  • 6
    • 0029912389 scopus 로고    scopus 로고
    • The thermal stability of DNA fragments with tandem mismatches at a d(CXYG).d(CY′X′G) site
    • Ke, S. H., and Wartell, R. M. (1996) The thermal stability of DNA fragments with tandem mismatches at a d(CXYG).d(CY′X′G) site, Nucleic Acids Res. 24, 707-712.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 707-712
    • Ke, S.H.1    Wartell, R.M.2
  • 7
    • 0029116756 scopus 로고
    • Oligonucleotides containing G·A pairs: Effect of flanking sequences on structure and stability
    • Li, Y., and Agrawal, S. (1995) Oligonucleotides containing G·A pairs: effect of flanking sequences on structure and stability, Biochemistry 34, 10056-10062.
    • (1995) Biochemistry , vol.34 , pp. 10056-10062
    • Li, Y.1    Agrawal, S.2
  • 8
    • 0025786033 scopus 로고
    • Thermodynamics of DNA duplexes with adjacent G·A mismatches
    • Li, Y., Zon, G., and Wilson, W. D. (1991) Thermodynamics of DNA duplexes with adjacent G·A mismatches, Biochemistry 30, 7566-7572.
    • (1991) Biochemistry , vol.30 , pp. 7566-7572
    • Li, Y.1    Zon, G.2    Wilson, W.D.3
  • 9
    • 0023406843 scopus 로고
    • Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
    • Marky, L. A., and Breslauer, K. J. (1987) Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves, Biopolymers 26, 1601-1620.
    • (1987) Biopolymers , vol.26 , pp. 1601-1620
    • Marky, L.A.1    Breslauer, K.J.2
  • 10
    • 0033596964 scopus 로고    scopus 로고
    • Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A·A, C·C, G·G, and T·T mismatches
    • Peyret, N., Seneviratne, P. A., Allawi, H. T., and SantaLucia, J., Jr. (1999) Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A·A, C·C, G·G, and T·T mismatches, Biochemistry 38, 3468-3477.
    • (1999) Biochemistry , vol.38 , pp. 3468-3477
    • Peyret, N.1    Seneviratne, P.A.2    Allawi, H.T.3    SantaLucia Jr., J.4
  • 11
    • 0032785904 scopus 로고    scopus 로고
    • Heat capacity effects on the melting of DNA. 2. Analysis of nearest-neighbor base pair effects
    • Rouzina, I., and Bloomfield, V. A. (1999) Heat capacity effects on the melting of DNA. 2. Analysis of nearest-neighbor base pair effects, Biophys. J. 77, 3252-3255.
    • (1999) Biophys. J. , vol.77 , pp. 3252-3255
    • Rouzina, I.1    Bloomfield, V.A.2
  • 12
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia, J., Jr. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics, Proc. Natl. Acad. Sci. U.S.A. 95, 1460-1465.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 13
    • 0037069430 scopus 로고    scopus 로고
    • Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: Implications for triplet expansion diseases
    • Volker, J., Makube, N., Plum, G. E., Klump, H. H., and Breslauer, K. J. (2002) Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases, Proc. Natl. Acad. Sci. U.S.A. 99, 14700-14705.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 14700-14705
    • Volker, J.1    Makube, N.2    Plum, G.E.3    Klump, H.H.4    Breslauer, K.J.5
  • 14
    • 0014721907 scopus 로고
    • Oligonucleotide interactions. IV. Conformational differences between deoxy- and ribodinucleoside phosphates
    • Warshaw, M. M., and Cantor, C. R. (1970) Oligonucleotide interactions. IV. Conformational differences between deoxy- and ribodinucleoside phosphates, Biopolymers 9, 1079-1103.
    • (1970) Biopolymers , vol.9 , pp. 1079-1103
    • Warshaw, M.M.1    Cantor, C.R.2
  • 15
    • 0002459355 scopus 로고
    • Thermal denaturation of DNA molecules: A comparison of theory with experiment
    • Wartell, R. M., and Benight, A. S. (1985) Thermal denaturation of DNA molecules: a comparison of theory with experiment, Phys. Rep. 126, 67-107.
    • (1985) Phys. Rep. , vol.126 , pp. 67-107
    • Wartell, R.M.1    Benight, A.S.2
  • 16
    • 0036318088 scopus 로고    scopus 로고
    • Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation
    • Wu, P., Nakano, S., and Sugimoto, N. (2002) Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation, Eur. J. Biochem. 269, 2821-2830.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 2821-2830
    • Wu, P.1    Nakano, S.2    Sugimoto, N.3
  • 17
    • 0030815643 scopus 로고    scopus 로고
    • Thermodynamics of nonsymmetric tandem mismatches adjacent to G·C base pairs in RNA
    • Xia, T., McDowell, J. A., and Turner, D. H. (1997) Thermodynamics of nonsymmetric tandem mismatches adjacent to G·C base pairs in RNA, Biochemistry 36, 12486-12497.
    • (1997) Biochemistry , vol.36 , pp. 12486-12497
    • Xia, T.1    McDowell, J.A.2    Turner, D.H.3
  • 18
    • 0042121256 scopus 로고    scopus 로고
    • Mfold webserver for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold webserver for nucleic acid folding and hybridization prediction, Nucleic Acids Res. 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.