-
2
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer, K. J., R. Frank, H. Blocker, and L. A. Marky. 1986. Predicting DNA duplex stability from the base sequence. Proc. Natl. Acad. Sci. USA. 83:3746-3750.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blocker, H.3
Marky, L.A.4
-
3
-
-
0025808064
-
Stacking energies in DNA
-
Delcourt, S. G., and R. D. Blake. 1991. Stacking energies in DNA. J. Biol. Chem. 266:15160-15169.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 15160-15169
-
-
Delcourt, S.G.1
Blake, R.D.2
-
4
-
-
0026899849
-
Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: Evaluation of the nearest-neighbor stacking interactions in DNA
-
Doktycz, M. J., R. F. Goldstein, T. M. Paner, F. J. Gallo, and A. S. Benight. 1992. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA. Biopolymers. 32:849-864.
-
(1992)
Biopolymers
, vol.32
, pp. 849-864
-
-
Doktycz, M.J.1
Goldstein, R.F.2
Paner, T.M.3
Gallo, F.J.4
Benight, A.S.5
-
5
-
-
84985667623
-
Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles
-
Gotoh, O., and Y. Tagashira. 1981. Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles. Biopolymers. 20:1033-1042.
-
(1981)
Biopolymers
, vol.20
, pp. 1033-1042
-
-
Gotoh, O.1
Tagashira, Y.2
-
7
-
-
33847798713
-
Enthalpy-entropy compensation. I. Some fundamental statistical problems associated with the analysis of van't Hoff and Arrhenius data
-
Krug, R. R., W. G. Hunter, and R. A. Grieger. 1976. Enthalpy-entropy compensation. I. Some fundamental statistical problems associated with the analysis of van't Hoff and Arrhenius data. J. Phys. Chem. 80: 2335-2341.
-
(1976)
J. Phys. Chem.
, vol.80
, pp. 2335-2341
-
-
Krug, R.R.1
Hunter, W.G.2
Grieger, R.A.3
-
8
-
-
0031432735
-
Predicting sequence-dependent melting stability of short duplex DNA oligomers
-
Owczarzy, R., P. M. Vallone, F. J. Gallo, T. M. Paner, M. J. Lane, and A. S. Benight. 1997. Predicting sequence-dependent melting stability of short duplex DNA oligomers. Biopolymers. 44:217-239.
-
(1997)
Biopolymers
, vol.44
, pp. 217-239
-
-
Owczarzy, R.1
Vallone, P.M.2
Gallo, F.J.3
Paner, T.M.4
Lane, M.J.5
Benight, A.S.6
-
9
-
-
0028783875
-
Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex
-
Plum, G. E., A. P. Grollman, F. Johnson, and K. J. Breslauer. 1995. Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex. Biochemistry. 34:16148-16160.
-
(1995)
Biochemistry
, vol.34
, pp. 16148-16160
-
-
Plum, G.E.1
Grollman, A.P.2
Johnson, F.3
Breslauer, K.J.4
-
10
-
-
84984087761
-
Determination of stability of the DNA double helix in an aqueous medium
-
Privalov, P. L., O. B. Ptitsyn, and T. M. Birshtein. 1969. Determination of stability of the DNA double helix in an aqueous medium. Biopolymers. 8:559-571.
-
(1969)
Biopolymers.
, vol.8
, pp. 559-571
-
-
Privalov, P.L.1
Ptitsyn, O.B.2
Birshtein, T.M.3
-
11
-
-
0017820499
-
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The roles of ion association or release, screening, and ion effects on water activity
-
Record, M. T., Jr., C. F. Anderson, and T. M. Lohman. 1978. Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity. Q. Rev. Biophys. 11:103-178.
-
(1978)
Q. Rev. Biophys.
, vol.11
, pp. 103-178
-
-
Record M.T., Jr.1
Anderson, C.F.2
Lohman, T.M.3
-
12
-
-
0032763957
-
Heat capacity effects on the melting of DNA. 1. General aspects
-
Rouzina, I., and V. A. Bloomfield. 1999. Heat capacity effects on the melting of DNA. 1. General aspects. Biophys. J. 77:000-000.
-
(1999)
Biophys. J.
, vol.77
-
-
Rouzina, I.1
Bloomfield, V.A.2
-
13
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
Santalucia, J. 1998. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA. 95:1460-1465.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
Santalucia, J.1
-
14
-
-
0029859713
-
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
-
Sugimoto, N., S. Nakano, M. Yoneyama, and K. Honda. 1996. Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res. 24:4501-4505.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4501-4505
-
-
Sugimoto, N.1
Nakano, S.2
Yoneyama, M.3
Honda, K.4
-
15
-
-
0021189006
-
Allowance for heterogeneous stacking in the DNA helix-coil transition theory
-
Vologodskii, A. V., B. R. Amirikyan, Y. L. Lyubchenko, and M. D. Frank-Kamenetskii. 1984. Allowance for heterogeneous stacking in the DNA helix-coil transition theory. J. Biomol. Struct. Dyn. 2:131-148.
-
(1984)
J. Biomol. Struct. Dyn.
, vol.2
, pp. 131-148
-
-
Vologodskii, A.V.1
Amirikyan, B.R.2
Lyubchenko, Y.L.3
Frank-Kamenetskii, M.D.4
|