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Volumn 23, Issue 3, 2006, Pages 598-607

Quantifying ascertainment bias and species-specific length differences in human and chimpanzee microsatellites using genome sequences

Author keywords

Ascertainment bias; Chimpanzee; Human; Microsatellite; Short tandem repeat

Indexed keywords

ARTICLE; CHIMPANZEE; DNA FLANKING REGION; GENE DELETION; GENE LOCUS; GENE MUTATION; GENETIC DIFFERENCE; GENETIC IDENTIFICATION; GENETIC PARAMETERS; GENOME; HUMAN; MICROSATELLITE MARKER; NONHUMAN; QUANTITATIVE ANALYSIS; SPECIES; SYSTEMATIC ERROR;

EID: 33244482650     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msj065     Document Type: Article
Times cited : (52)

References (35)
  • 1
    • 0037390285 scopus 로고    scopus 로고
    • Directional evolution of size coupled with ascertainment bias for variation in Drosophila microsatellites
    • Amos, W., C. M. Hutter, M. D. Schug, and C. F. Aquadro. 2003. Directional evolution of size coupled with ascertainment bias for variation in Drosophila microsatellites. Mol. Biol. Evol. 20:660-662.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 660-662
    • Amos, W.1    Hutter, C.M.2    Schug, M.D.3    Aquadro, C.F.4
  • 2
    • 0030017038 scopus 로고    scopus 로고
    • Microsatellites show mutational bias and heterozygote instability
    • Amos, W., S. J. Sawcer, R. W. Feakes, and D. C. Rubinsztein. 1996. Microsatellites show mutational bias and heterozygote instability. Nat. Genet. 13:390-391.
    • (1996) Nat. Genet. , vol.13 , pp. 390-391
    • Amos, W.1    Sawcer, S.J.2    Feakes, R.W.3    Rubinsztein, D.C.4
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 4
    • 0031778070 scopus 로고    scopus 로고
    • Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat
    • Brinkmann, B., M. Klintschar, F. Neuhuber, J. Huhne, and B. Rolf. 1998. Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am. J. Hum. Genet. 62:1408-1415.
    • (1998) Am. J. Hum. Genet. , vol.62 , pp. 1408-1415
    • Brinkmann, B.1    Klintschar, M.2    Neuhuber, F.3    Huhne, J.4    Rolf, B.5
  • 5
    • 0032717267 scopus 로고    scopus 로고
    • Markov chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation
    • USA
    • Cooper, G., N. J. Burroughs, D. A. Rand, D. C. Rubinsztein, and W. Amos. 1999. Markov chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation. Proc. Natl. Acad. Sci. USA 96:11916-11921.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 11916-11921
    • Cooper, G.1    Burroughs, N.J.2    Rand, D.A.3    Rubinsztein, D.C.4    Amos, W.5
  • 6
    • 0031686151 scopus 로고    scopus 로고
    • Ascertainment bias cannot entirely account for human microsatellites being longer than their chimpanzee homologues
    • Cooper, G., D. C. Rubinsztein, and W. Amos. 1998. Ascertainment bias cannot entirely account for human microsatellites being longer than their chimpanzee homologues. Hum. Mol. Genet. 7:1425-1429.
    • (1998) Hum. Mol. Genet. , vol.7 , pp. 1425-1429
    • Cooper, G.1    Rubinsztein, D.C.2    Amos, W.3
  • 7
    • 0029858326 scopus 로고    scopus 로고
    • Human microsatellites applicable for analysis of genetic variation in apes and old world monkeys
    • Coote, T., and M. W. Bruford. 1996. Human microsatellites applicable for analysis of genetic variation in apes and old world monkeys. J. Hered. 87:406-410.
    • (1996) J. Hered. , vol.87 , pp. 406-410
    • Coote, T.1    Bruford, M.W.2
  • 9
    • 0036735068 scopus 로고    scopus 로고
    • Dinucleotide microsatellite markers from the Antarctic seals and their use in other Pinnipeds
    • Davis, C. S., T. S. Gelatt, D. Siniff, and A. Strobeck. 2002. Dinucleotide microsatellite markers from the Antarctic seals and their use in other Pinnipeds. Mol. Ecol. Notes 2:203-208.
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 203-208
    • Davis, C.S.1    Gelatt, T.S.2    Siniff, D.3    Strobeck, A.4
  • 10
    • 0034079715 scopus 로고    scopus 로고
    • Heterogeneous mutation processes in human microsatellite DNA sequences
    • Ellegren, H. 2000. Heterogeneous mutation processes in human microsatellite DNA sequences. Nat. Genet. 24:400-402.
    • (2000) Nat. Genet. , vol.24 , pp. 400-402
    • Ellegren, H.1
  • 11
    • 0030838849 scopus 로고    scopus 로고
    • Microsatellite evolution - A reciprocal study of repeat lengths at homologous loci in cattle and sheep
    • Ellegren, H., S. Moore, N. Robinson, K. Byrne, W. Ward, and B. C. Sheldon. 1997. Microsatellite evolution - a reciprocal study of repeat lengths at homologous loci in cattle and sheep. Mol. Biol. Evol. 14:854-860.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 854-860
    • Ellegren, H.1    Moore, S.2    Robinson, N.3    Byrne, K.4    Ward, W.5    Sheldon, B.C.6
  • 12
    • 0029446727 scopus 로고
    • Microsatellite evolution - Directionality or bias
    • Ellegren, H., C. R. Primmer, and B. C. Sheldon. 1995. Microsatellite evolution - directionality or bias. Nat. Genet. 11:360-362.
    • (1995) Nat. Genet. , vol.11 , pp. 360-362
    • Ellegren, H.1    Primmer, C.R.2    Sheldon, B.C.3
  • 13
    • 17344380921 scopus 로고    scopus 로고
    • Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide under-representation
    • Harr, B., and C. Schlötterer. 2000. Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide under-representation. Genetics 155:1213-1220.
    • (2000) Genetics , vol.155 , pp. 1213-1220
    • Harr, B.1    Schlötterer, C.2
  • 15
    • 0031796424 scopus 로고    scopus 로고
    • Microsatellite variation in Drosophila melanogaster and Drosophila simulans: A reciprocal test of the ascertainment bias hypothesis
    • Hutter, C. M., M. D. Schug, and C. F. Aquadro. 1998. Microsatellite variation in Drosophila melanogaster and Drosophila simulans: a reciprocal test of the ascertainment bias hypothesis. Mol. Biol. Evol. 15:1620-1636.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1620-1636
    • Hutter, C.M.1    Schug, M.D.2    Aquadro, C.F.3
  • 17
    • 0028879204 scopus 로고
    • Increased microsatellite variability in Macaca-Mulatta compared to humans due to a large-scale deletion insertion event during primate evolution
    • Kayser, M., P. Nurnberg, F. Bercovitch, M. Nagy, and L. Roewer. 1995. Increased microsatellite variability in Macaca-Mulatta compared to humans due to a large-scale deletion insertion event during primate evolution. Electrophoresis 16:1607-1611.
    • (1995) Electrophoresis , vol.16 , pp. 1607-1611
    • Kayser, M.1    Nurnberg, P.2    Bercovitch, F.3    Nagy, M.4    Roewer, L.5
  • 18
    • 0347231556 scopus 로고    scopus 로고
    • Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs
    • Kayser, M., L. Roewer, M. Hedman et al. (14 co-authors). 2000. Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs. Am. J. Hum. Genet. 66:1580-1588.
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 1580-1588
    • Kayser, M.1    Roewer, L.2    Hedman, M.3
  • 19
    • 0141815478 scopus 로고    scopus 로고
    • Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
    • USA
    • Kent, W. J., R. Baertsch, A. Hinrichs, W. Miller, and D. Haussler. 2003. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc. Natl. Acad. Sci. USA 100:11484-11489.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 11484-11489
    • Kent, W.J.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4    Haussler, D.5
  • 20
    • 0032168989 scopus 로고    scopus 로고
    • Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations
    • USA
    • Kruglyak, S., R. T. Durrett, M. D. Schug, and C. F. Aquadro. 1998. Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc. Natl. Acad. Sci. USA 95:10774-10778.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 10774-10778
    • Kruglyak, S.1    Durrett, R.T.2    Schug, M.D.3    Aquadro, C.F.4
  • 21
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E. S., L. M. Linton, B. Birren et al. (255 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 22
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson, G., and G. A. Gutman. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-331.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 203-331
    • Levinson, G.1    Gutman, G.A.2
  • 23
    • 0031903898 scopus 로고    scopus 로고
    • Patterns of molecular evolution in avian microsatellites
    • Primmer, C. R., and H. Ellegren. 1998. Patterns of molecular evolution in avian microsatellites. Mol. Biol. Evol. 15: 997-1008.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 997-1008
    • Primmer, C.R.1    Ellegren, H.2
  • 24
    • 0031880362 scopus 로고    scopus 로고
    • Unraveling the processes of microsatellite evolution through analysis of germ line mutations in barn swallows Hirundo rustica
    • Primmer, C. R., N. Saino, A. P. Moller, and H. Ellegren. 1998. Unraveling the processes of microsatellite evolution through analysis of germ line mutations in barn swallows Hirundo rustica. Mol. Biol. Evol. 15:1047-1054.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1047-1054
    • Primmer, C.R.1    Saino, N.2    Moller, A.P.3    Ellegren, H.4
  • 25
    • 0030006814 scopus 로고    scopus 로고
    • 470 Million years of conservation of microsatellite loci among fish species
    • Rico, C., I. Rico, and G. Hewitt. 1996. 470 million years of conservation of microsatellite loci among fish species. Proc. R. Soc. B 263:549-557.
    • (1996) Proc. R. Soc. B , vol.263 , pp. 549-557
    • Rico, C.1    Rico, I.2    Hewitt, G.3
  • 27
    • 0033808899 scopus 로고    scopus 로고
    • Evolutionary dynamics of microsatellite DNA
    • Schlötterer, C. 2000. Evolutionary dynamics of microsatellite DNA. Chromosoma 109:365-371.
    • (2000) Chromosoma , vol.109 , pp. 365-371
    • Schlötterer, C.1
  • 28
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlötterer, C., and D. Tautz. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20:211-215.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 211-215
    • Schlötterer, C.1    Tautz, D.2
  • 30
    • 0031015410 scopus 로고    scopus 로고
    • Polyalanine expansion in synpolydactyly might result from unequal crossing-over of HOXD13
    • Warren, S. T. 1997. Polyalanine expansion in synpolydactyly might result from unequal crossing-over of HOXD13. Science 275:408-409.
    • (1997) Science , vol.275 , pp. 408-409
    • Warren, S.T.1
  • 31
    • 0027161022 scopus 로고
    • Mutation of human short tandem repeats
    • Weber, J. L., and C. Wong. 1993. Mutation of human short tandem repeats. Hum. Mol. Genet. 2:1123-1128.
    • (1993) Hum. Mol. Genet. , vol.2 , pp. 1123-1128
    • Weber, J.L.1    Wong, C.2
  • 32
    • 0037173031 scopus 로고    scopus 로고
    • Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments
    • USA
    • Webster, M. T., N. G. C. Smith, and H. Ellegren. 2002. Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments. Proc. Natl. Acad. Sci. USA 99:8748-8753.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 8748-8753
    • Webster, M.T.1    Smith, N.G.C.2    Ellegren, H.3
  • 33
    • 0034111151 scopus 로고    scopus 로고
    • The direction of microsatellite mutations is dependent upon allele length
    • Xu, X., M. Peng, Z. Fang, and X. P. Xu. 2000. The direction of microsatellite mutations is dependent upon allele length. Nat. Genet. 24:396-399.
    • (2000) Nat. Genet. , vol.24 , pp. 396-399
    • Xu, X.1    Peng, M.2    Fang, Z.3    Xu, X.P.4
  • 34
    • 0029818927 scopus 로고    scopus 로고
    • Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes)
    • Zardoya, R., D. M. Vollmer, C. Craddock, J. T. Streelman, S. Karl, and A. Meyer. 1996. Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). Proc. R. Soc. Lond. B Biol. Sci. 263:1589-1598.
    • (1996) Proc. R. Soc. Lond. B Biol. Sci. , vol.263 , pp. 1589-1598
    • Zardoya, R.1    Vollmer, D.M.2    Craddock, C.3    Streelman, J.T.4    Karl, S.5    Meyer, A.6
  • 35
    • 0033935516 scopus 로고    scopus 로고
    • A phylogenetic perspective on sequence evolution in microsatellite loci
    • Zhu, Y., D. C. Queller, and J. E. Strassmann. 2000. A phylogenetic perspective on sequence evolution in microsatellite loci. J. Mol. Evol. 50:324-338.
    • (2000) J. Mol. Evol. , vol.50 , pp. 324-338
    • Zhu, Y.1    Queller, D.C.2    Strassmann, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.