Phylogeny and biogeography of the Petaurista philippensis complex (Rodentia: Sciuridae), inter- and intraspecific relationships inferred from molecular and morphometric analysis

Molecular Phylogenetics and Evolution

Volumn 38, Issue 3, 2006, Pages 755-766

  Yu, Farong ^a   Yu, Fahong ^b   Pang, Junfeng ^c   Kilpatrick, C William ^d   McGuire, Peter M ^b   Wang, Yingxiang ^c   Lu, Shunqing ^c   Woods, Charles A ^e  

^a Gansu University of Political Science and Law   (China)

^b UNIVERSITY OF FLORIDA   (United States)

^c KUNMING INSTITUTE OF ZOOLOGY   (China)

^d UNIVERSITY OF VERMONT   (United States)

^e UNIVERSITY OF FLORIDA   (United States)

Author keywords

Biogeography; Cytochrome b gene; Flying squirrel; Molecular phylogeny; Morphometrics; Petaurista

Indexed keywords

PRIMER DNA;

ANIMAL; ARTICLE; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SCIURIDAE; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; DNA PRIMERS; PHYLOGENY; SCIURIDAE; SPECIES SPECIFICITY; VARIATION (GENETICS);

PETAURISTA; PETAURISTA LEUCOGENYS; PETAURISTA PETAURISTA; PETAURISTA PHILIPPENSIS; PTEROMYINI; RODENTIA; SCIURIDAE;

EID: 33244467466     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.12.002     Document Type: Article

References (57)

1. G.M. Allen Squirrels collected by the American Museum Asiatic Expeditions Am. Mus. Novitates 163 1925 16
2. G.M. Allen The Mammals of China and Mongolia 1940 American Museum of Natural History New York
3. K. Amano, and A. Taira Two-phase uplift of Higher Himalayas since 17 Ma Geology 20 1992 391 394
4. Z.S. An, J.E. Kutzbach, W.L. Prell, and S.C. Porter Evolution of Asian monsoons and phased uplift of the Himalaya-Tibetan plateau since Late Miocene times Nature 411 2001 62 66
5. B.S. Arbogast Mitochondrial DNA phylogeography of the New World flying squirrels (Glaucomys): implications for Pleistocene biogeography J. Mamm. 80 1999 142 155
6. C.C. Black Holarctic evolution and dispersal of squirrels (Rodentia: Sciuridae) Evol. Biol. 6 1972 305 322
7. R.D. Bradley, and R.J. Baker A test of the genetic species concept: cytochrome b sequences and mammals J. Mamm. 82 2001 960 973
8. Bruijn, H., Uney, E., 1989. Petauristinae from the Oligocene of Spain, Belgium and Turkish Thrace. Science Series, Natural History Museum of Los Angeles County, Los Angeles, pp. 139-145.
9. G.B. Corbet, and J.E. Hill The Mammals of the Indomalayan Region: A Systematic Review 1992 Oxford Univeristy Press Oxford pp. 306-320
10. H. De Bruijn Superfamily Sciuroidea G.E. Rosner K. Heissing The Miocene Land Mammals of Europe 1999 Verlag Dr. Friedrich Pfeil Munchen 271 280
11. G. D'Elia, and U.F.J. Pardinas Systematics of Argentinean, Paraguayan, and Uruguayan swamp rats of the genus Scapteromys (Rodentia, Cricetidae, Sigmondontinae) J. Mammal. 85 2004 897 910
12. J.R. Ellerman The Families and Genera of Living Rodents: Rodents other than Muridae 1940 Trustees of the British Museum (Natural History) London, United Kingdom
13. J.R. Ellerman, and T.C.S. Morrison-Scott Checklist of Palaeartic and Indian Mammals 1758 to 1964 second ed. 1951 Trustees of the British Museum Natural History London, United Kingdom
14. M.D. Herron, T.A. Castoe, and T.A. Parkinson Sciurid phylogeny and the paraphyly of Holarctic ground squirrels (Spermophilus) Mol. Phylogenet. Evol. 31 2004 1015 1030
15. T. Hikida, and H. Ota Biogeography of reptiles in the subtropical East Asian islands K.Y. Lue T.H. Chen Symposium on the Phylogeny, Biogeography, and Conversation of Fauna and Flora of East Asian Region 1997 National Taiwan Normal University Taipei, Taiwan 11 27
16. J.P. Hugot Phylogeny of neotropical monkeys: the interplay of morphological, molecular, and parasitological data Mol. Phylogenet. Evol. 9 1998 408 413
17. J. Hsü On the palaeobotanical evidence for continental drift and Himalayan uplift Palaeobotanist 25 1976 131 142
18. D.M. Irwin, T.D. Kocher, and A.C. Wilson Evolution of the cytochrome b gene of mammals J. Mol. Evol. 32 1991 128 144
19. J.L. Johnson-Murray Myology of the gliding membranes of some petauristine (Genera: Glaucomys, Pteromys, Petinomys, and Petaurista) J. Mamm. 58 1977 374 384
20. K. Kim, K.R. Kim, H.K. Rho, R. Limeburner, and R.C. Searsley Identification of water masses in the Yellow Sea and the East China Sea by cluster analysis K. Takano Oceanography of Asian Marginal Seas 1991 Elsevier Oceanography Series Amsterdam, the Netherlands 253 265
21. M. Kimura A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 1980 111 120
22. T.D. Kocher, W.K. Thomas, A. Meyer, S.V. Edwards, S. Paabo, F.X. Villablanca, and A.C. Wilson Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers Proc. Natl. Acad. Sci. USA 86 1989 6196 6200
23. B. Lekagul, and J.A. McNeely Mammals of Thailand 1988 Darnsutha Press Bangkok pp. 200-380
24. C.C. Lin An outline of Taiwan's quaternary geohistory with a special discussion of the relation between natural history and culture history in Taiwan Bull. Dep. Archaeol. Anthropol. 28 1966 7 44
25. M.C. McKenna Eupetaurus and the living Petauristine sciurids Am. Mus. Novitates 2104 1962 1 38
26. P. Mein Les sciuripteres (Mammalia, Rodentia) neogenes d'Europe occidentale Geobios 3 1970 7 56
27. J.M. Mercer, and V.L. Roth The effects of Cenozoic global change on squirrel phylogeny Science 299 2003 1568 1572
28. J.A. Nylander MrModeltest v2. Program Distributed by the Author. Evolutionary Biology Centre 2004 Uppsala University Uppsala, Sweden
29. R.M. Nowak Walker's Mammals of the World (Sixth edition) 1999 Johns Hopinks University Press Baltimore pp. 1291-1305
30. T. Oshida, H. Satoh, and Y. Obara A preliminary note on the karyotypes of giant flying squirrels Petaurista alborufus and P. petaurista J. Mamm. Soc. Jpn. 16 1992 59 69
31. T. Oshida, R. Masuda, and M.C. Yoshida Phylogenetic relationships among Japanese species of the family Sciuridae (Mammalia, Rodents), inferred from nucleotide sequences of mitochondrial 12S ribosomal RNA genes Zool. Sci. 13 1996 615 620
32. T. Oshida, and R. Masuda Phylogenetic relationships among six squirrel species of the genus Sciurus (Mammalia, Rodentia), inferred from mitochondrial cytochrome b gene sequences Zool. Sci. 17 2000 405 409
33. T. Oshida, L.K. Lin, R. Masuda, and M.C. Yoshida Phylogenetic relationships among Asian species of Petaurista (Rodentia, Sciuridae), inferred from mitochondrial cytochrome b gene sequences Zool. Sci. 17 2000 123 128
34. T. Oshida, L.K. Lin, J. Yanagawa, H. Endo, and R. Masuda Phylogenetic relationships among six flying squirrel genera, inferred from mitochondrial cytochrome b gene sequences Zool. Sci. 17 2000 485 489
35. T. Oshida, K. Ikeda, K. Yamada, and R. Masuda Phylogenetics of the Japanese giant flying squirrel, Petaurista leucogenys, based on mitochondrial DNA control region sequences Zool. Sci. 18 2001 107 114
36. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
37. B.R. Riddle The molecular phylogeographic bridge between deep and shallow history in continental biotas Trends Ecol. Evol. 11 1996 207 211
38. T.J. Roberts The Mammals of Pakistan 1997 Oxford University Press Oxford, New York pp. 3-327
39. R.M. Rodriguez, and L.K. Ammerman Mitochondrial DNA divergence does not reflect morphological difference between Myotis californicus and Myotis ciliolabrum J. Mamm. 85 2004 842 851
40. Rutschmann, F., 2004. Bayesian molecular dating using PAML/multidivtime. A step-by-step manual. University of Zurich, Switzerland. < http://www.plant.ch 〉.
41. G.L. Seutin, M. Ratcliffe, and P.T. Boag Mitochondrial DNA homogeneity in the phenotypically diverse redpoll finch complex (Aves: Carduelinae: Carduelis flammea-hornemanni) Evolution 49 1995 962 973
42. Statmost StatMost: Statistical Analysis and Graphics 1995 DataMost Corporation Salt Lake City, Utah
43. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, MA.
44. R.W. Thorington, and L.R. Heaney Body proportions and gliding adaptations of flying squirrels (Petauristae) J. Mamm. 62 1981 101 114
45. J.L. Thorne, H. Kishino, and I.S. Painter Estimating the rate of evolution of the rate of molecular evolution Mol. Biol. Evol. 15 1998 1647 1657
46. J.L. Thorne, and H. Kishino Divergence time and evolutionary rate estimation with multilocus data Syst. Biol. 51 2002 689 702
47. X.Z. Wang The paleoenviroment of China from the tertiary R.O. Whyte The Evolution of the Paleoenvironment of China since the Late Tertiary 1984 Hong Kong Press Hong Kong 472 482
48. Y.X. Wang A Complete Checklist of Mammal Species and Subspecies in China 2002 Chinese Forestry Publishing House Beijing pp. 155-161
49. P. Wettstein, M. Strausbauch, R. Lamb, J. States, R. Charkrabotry, L. Jin, and R. Riblet Phylogeny of six Sciurus aberti subspecies based on nucleotide sequences of cytochrome b Mol. Phylogenet. Evol. 4 1995 150 162
50. D.E. Wilson, and D.M. Reeder Mammal Species of the World Second Ed. 1992 Smithsonian Institute Press Washington and London
51. A.J. Wright, R.A. Van Den Bussche, B.K. Lim, M.D. Engstrom, and R.J. Baker Systematics of the genera Carollia and Rhinophylla based on the cytochrome b gene J. Mamm. 80 1999 1202 1213
52. R. Xu Vegetational changes in the past and the uplift of Qinghai-Xizang plateau D.S. Liu Geological and Ecological Studies of Qinghai-Xizang Plateau 1981 Science Press Beijing 139 144
53. Z. Yang PAML: A Program Package for Phylogenetic Analysis by Maximum Likelihood CABIOS 13 1997 555 556
54. C.C. Young Notes on a Pleistocene microfauna from Loping, Kiangsi Bull. Geol. Soc. Chin. 27 1947 163 170
55. F.H. Yu, F.R. Yu, P.M. McGuire, C.W. Kilpatrick, J.F. Peng, X.X. Wang, S.Q. Lu, and C.A. Woods Molecular phylogeny and biogeography of woolly flying squirrel (Rodentia: Sciuridae), inferred from mitochondrial cytochrome b gene sequences Mol. Phylogenet. Evol. 33 2004 735 744
56. Y.Z. Zhang, Z.J. Feng, K. Liu, and Y.Z. Xu Distribution of Mammalian Species in China 1997 China Forestry Publishing House Beijing, China
57. H. Zheng, C.M. Powell, Z. An, J. Zhou, and G. Dong Pliocene uplift of the northern Tibetan Plateau Geology 28 2000 715 718