Patulibacter minatonensis gen. nov., sp. nov., a novel actinobacterium isolated using an agar medium supplemented with superoxide dismutase, and proposal of Patulibacteraceae fam. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 2, 2006, Pages 401-406

  Takahashi, Yoko ^a   Matsumoto, Atsuko ^b   Morisaki, Kurimi ^a   Omura, Satoshi ^a,b  

^a KITASATO UNIVERSITY   (Japan)

^b KITASATO INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; BACTERIAL DNA; CATALASE; CYTOSINE; DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID; GLUTAMIC ACID; MENAQUINONE; MYCOLIC ACID; MYRISTIC ACID; OXIDOREDUCTASE; PALMITIC ACID; PEPTIDOGLYCAN; RNA 16S; STEARIC ACID; SUPEROXIDE DISMUTASE;

ACTINOBACTERIA; AGAR MEDIUM; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA CONTENT; FLAGELLUM; GENOTYPE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PATULIBACTER MINATONENSIS; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SOIL;

ACTINOBACTERIA; AGAR; BACTERIAL TYPING TECHNIQUES; BACTERIOLOGICAL TECHNIQUES; BASE COMPOSITION; CULTURE MEDIA; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GENOTYPE; MOLECULAR SEQUENCE DATA; PHENOTYPE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SUPEROXIDE DISMUTASE;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); CONEXIBACTER; CONEXIBACTER WOESEI; POSIBACTERIA;

EID: 33244462166     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63796-0     Document Type: Article

References (30)

1. Becker, B., Lechevalier, M. P. & Lechevalier, H. A. (1965). Chemical composition of cell-wall preparations from strains of various form-genera of aerobic actinomycetes. Appl Microbiol 13, 236-243.
2. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
3. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
6. Hiraishi, A. (1988). High-performance liquid chromatographic analysis of demethylmenaquinone and menaquinone mixtures from bacteria. J Appl Bacteriol 64, 103-105.
7. Joseph, S. J., Hugenholtz, P., Sangwan, P., Osborne, C. A. & Janssen, P. H. (2003). Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol 69, 7210-7215.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
9. Kroppenstedt, R. M. & Mannheim, W. (1989). Lipoquinones in members of the family Pasteurellaceae. Int J Syst Bacteriol 39, 304-308.
10. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
11. Monciardini, P., Cavaletti, L., Schumann, P., Rohde, M. & Donadio, S. (2003). Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. Int J Syst Evol Microbiol 53, 569-576.
12. Rheims, H., Sproer, C., Rainey, F. A. & Stackebrandt, E. (1996). Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology 142, 2863-2870.
13. Rheims, H., Felske, A., Seufert, S. & Stackebrandt, E. (1999). Molecular monitoring of an uncultured group of the class Actinobacteria in two terrestrial environments. J Microbiol Methods 36, 65-75.
14. Sait, M., Hugenholtz, P. & Janssen, P. H. (2002). Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol 4, 654-666.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Schleifer, K. H. (2004). Microbial diversity: facts, problems and prospects. Syst Appl Microbiol 27, 3-9.
17. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
18. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
19. Singleton, D. R., Furlong, M. A., Peacock, A. D., White, D. C., Coleman, D. C. & Whitman, W. B. (2003). Solirubrobacter pauli gen. nov., sp. nov., a mesophilic bacterium within the Rubrobacteridae related to common soil clones. Int J Syst Evol Microbiol 53, 485-490.
20. Stackebrandt, E. (2004). Will we ever understand? The undescribable diversity of the prokaryotes. Acta Microbiol Immunol Hung 51, 449-462.
21. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
22. Swofford, D. (2001). PAUP*, Phylogenetic Analysis Using Parsimony (*and other methods), version 4.0b8. Sunderland, MA: Sinauer.
23. Takahashi, Y., Matsumoto, A., Seino, A., Ueno, J., Iwai, Y. & Omura, S. (2002). Streptomyces avermectinius sp. nov., an avermectin-producing strain. Int J Syst Evol Microbiol 52, 2163-2168.
24. Takahashi, Y., Katoh, S., Shikura, N., Tomoda, H. & Omura, S. (2003). Superoxide dismutase produced by soil bacteria increases bacterial colony growth from soil samples. J Gen Appl Microbiol 49, 263-266.
25. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
26. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
27. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
28. Tomiyasu, I. (1982). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828-837.
29. Uchida, K. & Aida, K. (1977). Acyl type of bacterial cell wall: its simple identification by colorimetric method. J Gen Appl Microbiol 23, 249-260.
30. Whitman, W. B., Coleman, D. C. & Wiebe, W. J. (1998). Prokaryotes: the unseen majority. Proc Natl Acad Sci U S A 95, 6578-6583.