Solirubrobacter pauli gen. nov., sp. nov., a mesophilic bacterium within the Rubrobacteridae related to common soil clones

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 2, 2003, Pages 485-490

  Singleton, David R ^a   Furlong, Michelle A ^b   Peacock, Aaron D ^c   White, David C ^c   Coleman, David C ^a   Whitman, William B ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b Clayton College and State University ^*  (United States)

^c UNIVERSITY OF TENNESSEE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGAR; AMINO ACID; CARBOHYDRATE; RNA 16S;

ACTINOBACTERIA; AEROBIC BACTERIUM; AGRICULTURE; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CARBON SOURCE; CELL SIZE; CONTROLLED STUDY; CULTURE MEDIUM; DESICCATION; GRAM POSITIVE BACTERIUM; MOLECULAR CLONING; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; RUBROBACTER XYLANOPHILUS; RUBROBACTERIDAE; SEQUENCE HOMOLOGY; SOIL MICROFLORA; SOLIRUBROBACTER PAULI; SPECIES DIFFERENCE; TAXONOMY; TEMPERATURE;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); POSIBACTERIA; PROKARYOTA; RUBROBACTER; RUBROBACTER XYLANOPHILUS; RUBROBACTERIDAE; SOLIRUBROBACTER PAULI;

EID: 0037359067     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02438-0     Document Type: Article

References (28)

1. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
2. Benson, H. J. (1990). Microbiological Applications: a Laboratory Manual in General Microbiology. Dubuque, IA: Wm. C. Brown.
3. Billi, D. & Potts, M. (2002). Life and death of dried prokaryotes. Res Microbiol 153, 7-12.
4. Bligh, E. G. & Dyer, W. J (1954). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911-917.
5. Carreto, L., Moore, E., Nobre, M. F., Wait, R. Riley, P. W., Sharp, R. J. & da Costa, M. S. (1996). Rubrobacter xylanophilus sp. nov., a new thermophilic species isolated from a thermally polluted effluent. Int J Syst Bacteriol 46, 460-465.
6. Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
7. Ferreira, A. C., Nobre, M. F., Moore, E., Rainey, F. A., Battista, J. R. & da Costa, M. S. (1999). Characterization and radiation resistance of new isolates of Rubrobacter radiotolerans and Rubrobacter xylanophilus. Extremophiles 3, 235-238.
8. Furlong, M. A., Singleton, D. R. Coleman, D. C. & Whitman, W. B. (2002). Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Appl Environ Microbiol 68, 1265-1279.
9. Guckert, J. B., Antworth, C. P., Nichols, P. D. & White, D. C. (1985). Phospholipid ester-linked fatty acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbiol Ecol (FEMS Microbiol Lett Special Issue) 31, 147-158.
10. Hahn, T.-W., Willby, M. J. & Krause, D. C. (1998). HMW1 is required for cytadhesin P1 trafficking to the attachment organelle in Mycoplasma pneumoniae. J Bacteriol 180, 1270-1276.
11. Heuer, H., Kroppenstedt, R. M., Lottmann, J., Berg, G. & Smalla, K. (2002). Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors. Appl Environ Microbiol 68, 1325-1335.
12. Holmes, A. J., Bowyer, J., Holley, M. P., O'Donoghue, M., Montgomery, M. & Gillings, M. R. (2000). Diverse, yet-to-be- cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian arid soils. FEMS Microbiol Ecol 33, 111-120.
13. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Sequencing Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
14. Liesack, W. & Stackebrandt, E. (1992). Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J Bacteriol 174, 5072-5078.
15. Mattimore, V. & Battista, J. R. (1996). Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J Bacteriol 178, 633-637.
16. McCaig, A. E., Glover, L. A. & Prosser, J. I. (1999). Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microbiol 65, 1721-1730.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
19. Rheims, H., Spröer, C., Rainey, F. A. & Stackebrandt, E. (1996). Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology 142, 2863-2870.
20. Röling, W. F. M., van Breukelen, B. M., Braster, M., Lin, B. & van Verseveld, H. W. (2001). Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl Environ Microbiol 67, 4619-4629.
21. Saito, T., Terato, H. & Yamamoto, O. (1994). Pigments of Rubrobacter radiotolerans. Arch Microbiol 162, 414-421.
22. Sanders, S. W. & Maxcy, R. B. (1979). Isolation of radiation-resistant bacteria without exposure to irradiation. Appl Environ Microbiol 38, 436-439.
23. Suzuki, K., Collins, M. D., Iijima, E. & Komagata, K. (1988). Chemotaxonomic characterization of a radiotolerant bacterium Arthrobacter radiotolerans: description of Rubrobacter radiotolerans gen. nov., comb. nov. FEMS Microbiol Lett 52, 33-40.
24. Ueda, T., Suga, Y. & Matsuguchi, T. (1995). Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur J Soil Sci 46, 415-421.
25. Valinsky, L., Della Vedova, G., Scupham, A. J. & 8 other authors (2002). Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes. Appl Environ Microbiol 68, 3243-3250.
26. White, D. C., Davis, W. M., Nickels, J. S., King, J. D. & Bobbie, R. J. (1979). Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40, 51-62.
27. Whitman, W. B., Shieh, J., Sohn, S., Caras, D. S. & Premachandran, U. (1986). Isolation and characterization of 22 mesophilic methanococci. Syst Appl Microbiol 7, 235-240.
28. Yoshinaka, T., Yano, K. & Yamaguchi, H. (1973). Isolation of highly radioresistant bacterium, Arthrobacter radiotolerans nov. sp. Agric Biol Chem 37, 2269-2275.