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Volumn 36, Issue 1-2, 1999, Pages 65-75

Molecular monitoring of an uncultured group of the class Actinobacteria in two terrestrial environments

Author keywords

Actinobacterial clone sequences; Drentse A grassland soil; Nested PCR; Peat bog; Phylogeny

Indexed keywords

ACTINOBACTERIA; CONFERENCE PAPER; GERMANY; NETHERLANDS; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA ANALYSIS; SOIL MICROFLORA;

EID: 0033135637     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(99)00012-3     Document Type: Conference Paper
Times cited : (47)

References (37)
  • 1
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann R.I., Krumholz L., Stahl D.A. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:1990;762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 3
    • 0031970018 scopus 로고    scopus 로고
    • Molecular investigation of a microbial mat associated with the Great Artesian Basin
    • Byers H.K., Stackebrandt E., Hayward C., Blackall L.L. Molecular investigation of a microbial mat associated with the Great Artesian Basin. FEMS Microbiol. Ecol. 25:1998;391-403.
    • (1998) FEMS Microbiol. Ecol. , vol.25 , pp. 391-403
    • Byers, H.K.1    Stackebrandt, E.2    Hayward, C.3    Blackall, L.L.4
  • 4
    • 0004213675 scopus 로고    scopus 로고
    • DSMZ catalogue of plant cell lines Mascheroder Weg 1b, 38124 Braunschweig, Germany. Information also available under the following internet address:
    • DSMZ catalogue of plant cell lines 1996. Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg 1b, 38124 Braunschweig, Germany. Information also available under the following internet address: http://www.dsmz.de.
    • (1996) Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • 5
    • 0004213675 scopus 로고    scopus 로고
    • DSMZ catalogue of strains Mascheroder Weg 1b, 38124 Braunschweig, Germany. Information also available under the following internet address:
    • DSMZ catalogue of strains 1998. Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg 1b, 38124 Braunschweig, Germany. Information also available under the following internet address: http://www.dsmz.de.
    • (1998) Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • 6
    • 0003437299 scopus 로고
    • version 3.5.1. Seattle: Department of Genetics, University of Washington.
    • Felsenstein, J. (1993). PHYLIP Phylogeny Inference Package, version 3.5.1. Seattle: Department of Genetics, University of Washington.
    • (1993) PHYLIP Phylogeny Inference Package
    • Felsenstein, J.1
  • 7
    • 0030762263 scopus 로고    scopus 로고
    • Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
    • Felske A., Rheims H., Wolterink A., Stackebrandt E., Akkermans A.D.L. Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology. 143:1997;2983-2989.
    • (1997) Microbiology , vol.143 , pp. 2983-2989
    • Felske, A.1    Rheims, H.2    Wolterink, A.3    Stackebrandt, E.4    Akkermans, A.D.L.5
  • 8
    • 0029805854 scopus 로고    scopus 로고
    • Direct ribosome isolation from soil to extract bacterial rRNA for community analysis
    • Felske A., Engelen B., Nübel U., Backhaus H. Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl. Environ. Microbiol. 62:1996;4162-4167.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4162-4167
    • Felske, A.1    Engelen, B.2    Nübel, U.3    Backhaus, H.4
  • 9
    • 0031732597 scopus 로고    scopus 로고
    • Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints
    • Felske A., Akkermans A.D.L., De Vos W.M. Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl. Environ. Microbiol. 64:1998;4581-4587.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4581-4587
    • Felske, A.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 10
    • 0031811411 scopus 로고    scopus 로고
    • Spatial homogeneity of the most abundant bacterial 16S rRNA molecules in grassland soils
    • Felske A., Akkermans A.D.L. Spatial homogeneity of the most abundant bacterial 16S rRNA molecules in grassland soils. Microb. Ecol. 36:1998;31-36.
    • (1998) Microb. Ecol. , vol.36 , pp. 31-36
    • Felske, A.1    Akkermans, A.D.L.2
  • 11
    • 0013478361 scopus 로고    scopus 로고
    • Quantification of 16S rRNA levels from uncultured Holophaga/Acidobacterium relatives in soil.
    • in press.
    • Felske A., Akkermans, A.D.L., de Vos, W.M. (1998). Quantification of 16S rRNA levels from uncultured Holophaga/Acidobacterium relatives in soil. FEMS Microbiol. Ecol., in press.
    • (1998) FEMS Microbiol. Ecol.
    • Felske, A.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 12
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
    • Fuhrmann J.A., McCallum K., Davis A.A. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59:1993;1294-1302.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrmann, J.A.1    McCallum, K.2    Davis, A.A.3
  • 13
    • 0014276538 scopus 로고
    • Nutrient requirements of suspension cultures of soybean root cells
    • Gamborg O.L., Miller R.A., Ojima K. Nutrient requirements of suspension cultures of soybean root cells. Exp. Cell Res. 50:1968;151-158.
    • (1968) Exp. Cell Res. , vol.50 , pp. 151-158
    • Gamborg, O.L.1    Miller, R.A.2    Ojima, K.3
  • 14
    • 0029662912 scopus 로고    scopus 로고
    • Broad-scale approaches to the determination of soil microbial community structure: Application of the community DNA hybridization technique
    • Griffiths B.S., Ritz K., Glover L.A. Broad-scale approaches to the determination of soil microbial community structure: application of the community DNA hybridization technique. Microbiol. Ecol. 31:1996;269-280.
    • (1996) Microbiol. Ecol. , vol.31 , pp. 269-280
    • Griffiths, B.S.1    Ritz, K.2    Glover, L.A.3
  • 15
    • 0001633459 scopus 로고
    • Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes
    • Hayakawa M., Nonomura H. Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J. Ferment. Technol. 65:1987;501-509.
    • (1987) J. Ferment. Technol. , vol.65 , pp. 501-509
    • Hayakawa, M.1    Nonomura, H.2
  • 16
    • 0002912874 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) for studying soil microbial communities
    • J.D. van Elsas, E.M.H. Wellington, & J.T. Trevors. New York: Marcel Dekker
    • Heuer H., Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) for studying soil microbial communities. van Elsas J.D., Wellington E.M.H., Trevors J.T. Modern Soil Microbiology. 1997;353-373 Marcel Dekker, New York.
    • (1997) Modern Soil Microbiology , pp. 353-373
    • Heuer, H.1    Smalla, K.2
  • 17
    • 0018423107 scopus 로고
    • A tentative direct microscopic method for counting living marine bacteria
    • Kogure K., Simidu U., Taga N. A tentative direct microscopic method for counting living marine bacteria. Can. J. Microbiol. 25:1978;415-420.
    • (1978) Can. J. Microbiol. , vol.25 , pp. 415-420
    • Kogure, K.1    Simidu, U.2    Taga, N.3
  • 18
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack W., Stackebrandt E. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:1992;5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 20
    • 0002845874 scopus 로고
    • New methods for the selective isolation of soil actinomycetes
    • Y. Okami, T. Beppu, & Y. Okami. Tokyo: Japan Scientific Societies Press
    • Nonomura H., Hayakawa M. New methods for the selective isolation of soil actinomycetes. Okami Y., Beppu T., Okami Y. Biology of Actinomycetes '88. 1988;288-293 Japan Scientific Societies Press, Tokyo.
    • (1988) Biology of Actinomycetes '88 , pp. 288-293
    • Nonomura, H.1    Hayakawa, M.2
  • 21
    • 0029799968 scopus 로고    scopus 로고
    • The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: Proposal of Nocardiopsaceae fam. nov
    • Rainey F.A., Ward-Rainey N., Kroppenstedt R.M., Stackebrandt E. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol. 46:1996;1088-1092.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 1088-1092
    • Rainey, F.A.1    Ward-Rainey, N.2    Kroppenstedt, R.M.3    Stackebrandt, E.4
  • 23
    • 0031395502 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
    • Rappé M.S., Kemp P.F., Giovannoni S.J. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol. Oceanogr. 42:1997;811-826.
    • (1997) Limnol. Oceanogr. , vol.42 , pp. 811-826
    • Rappé, M.S.1    Kemp, P.F.2    Giovannoni, S.J.3
  • 24
    • 0031964656 scopus 로고    scopus 로고
    • Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States
    • Rappé M.S., Suzuki M.T., Vergin K.L., Giovannoni S.J. Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States. Appl. Environ. Microbiol. 64:1998;294-303.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 294-303
    • Rappé, M.S.1    Suzuki, M.T.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 25
    • 0029853626 scopus 로고    scopus 로고
    • Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations
    • Rheims H., Spröer C., Rainey F.A., Stackebrandt E. Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology. 142:1996;2863-2870.
    • (1996) Microbiology , vol.142 , pp. 2863-2870
    • Rheims, H.1    Spröer, C.2    Rainey, F.A.3    Stackebrandt, E.4
  • 26
    • 0030483155 scopus 로고    scopus 로고
    • A molecular approach to search for bacteria in the environment
    • Rheims H., Rainey F.A., Stackebrandt E. A molecular approach to search for bacteria in the environment. J. Ind. Microbiol. 17:1996;159-169.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 159-169
    • Rheims, H.1    Rainey, F.A.2    Stackebrandt, E.3
  • 27
    • 0031785560 scopus 로고    scopus 로고
    • Verrucosispora gifhornensis, gen. nov., sp. nov. a new member of the actinobacterial family Micromonosporaceae
    • Rheims H., Schumann P., Rohde M., Stackebrandt E. Verrucosispora gifhornensis, gen. nov., sp. nov. a new member of the actinobacterial family Micromonosporaceae. Int. J. Syst. Bacteriol. 48:1998;1119-1127.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 1119-1127
    • Rheims, H.1    Schumann, P.2    Rohde, M.3    Stackebrandt, E.4
  • 28
    • 0344780789 scopus 로고    scopus 로고
    • Description of Bacillus silvestris, sp. nov., a new member of the genus Bacillus, containing lysine in its cell wall
    • Rheims H., Frühling A., Schumann P., Rohde M., Stackebrandt E. Description of Bacillus silvestris, sp. nov., a new member of the genus Bacillus, containing lysine in its cell wall. Int. J. Syst. Bacteriol. 49:1998;795-802.
    • (1998) Int. J. Syst. Bacteriol. , vol.49 , pp. 795-802
    • Rheims, H.1    Frühling, A.2    Schumann, P.3    Rohde, M.4    Stackebrandt, E.5
  • 29
    • 0001023407 scopus 로고
    • Methods for characterization of Streptomyces species
    • Shirling E.B., Gottlieb D. Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol. 16:1966;313-340.
    • (1966) Int. J. Syst. Bacteriol. , vol.16 , pp. 313-340
    • Shirling, E.B.1    Gottlieb, D.2
  • 30
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt E., Liesack W., Goebel B.M. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB. 7:1993;232-236.
    • (1993) FASEB , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 31
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a new hierarchic classification system, Actinobacteria classis nov
    • Stackebrandt E., Rainey F.A., Ward-Rainey N.L. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int. J. Syst. Bacteriol. 47:1997;479-491.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.A.2    Ward-Rainey, N.L.3
  • 34
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soybean field
    • Ueda T., Suga Y., Matsuguchi T. Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur. J. Soil Sci. 46:1995;415-421.
    • (1995) Eur. J. Soil Sci. , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Matsuguchi, T.3
  • 35
    • 0028091275 scopus 로고
    • The regulation of ribosomal RNA synthesis and bacterial cell growth
    • Wagner R. The regulation of ribosomal RNA synthesis and bacterial cell growth. Arch. Microbiol. 161:1994;100-106.
    • (1994) Arch. Microbiol. , vol.161 , pp. 100-106
    • Wagner, R.1
  • 36
    • 85143848022 scopus 로고
    • Ribosomal RNA analysis of microorganisms as they occur in nature
    • Marshall K.C. New York: Plenum Press
    • Ward D.M., Bateson M.M., Weller R., Ruff-Roberts A.L. Ribosomal RNA analysis of microorganisms as they occur in nature. Marshall K.C. Advances in Microbial Ecology. 12:1992;219-286 Plenum Press, New York.
    • (1992) Advances in Microbial Ecology , vol.12 , pp. 219-286
    • Ward, D.M.1    Bateson, M.M.2    Weller, R.3    Ruff-Roberts, A.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.