Secondary structure breakers and hairpin structures in myoglobin and hemoglobin

Chem-Bio Informatics Journal

Volumn 5, Issue 3, 2006, Pages 65-77

  Imai, Kenichiro ^a   Asakawa, Naoyuki ^a   Tsuji, Toshiyuki ^a   Sonoyama, Masashi ^a   Mitaku, Shigeki ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

All protein; Bioinformatics; Charge symmetry; Prediction; Secondary structure

Indexed keywords

EID: 33144456177     PISSN: 13476297     EISSN: None     Source Type: Journal    
DOI: 10.1273/cbij.5.65     Document Type: Article

References (26)

1. T. Hirokawa, S. Boon-Chieng, S. Mitaku, Bioinformatics, 14, 378-379(1998).
2. T. Tsuji, S. Mitaku, CBIJ, 4, 110-120 (2004).
3. S. Mitaku, T. Hirokawa, T. Tsuji, Bioinformatics, 18, 608-616 (2002).
4. N. Uchikoga, S. Takahashi, R. Ke, M. Sonoyama, S. Mitaku, Protein Sci., 14, 74-80 (2005).
5. C. Branden, J. Tooze, Introduction to Protein Structure, Garland Publishing, (1999).
6. K. Imai, S. Mitaku, BIOPHYSICS, 1, 55-65 (2005).
7. A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia, J. Mol. Biol., 247, 536-540 (1995).
8. J. Kyte and R. F. Doolittle, J. Mol. Biol., 157, 105-132 (1982).
9. K. Imai, S. Mitaku, CBIJ, 3, 194-200 (2003).
10. J. Yang, A. P. Kloek, D. E. Goldberg and R. S. Mathews, Proc. Natl. Acad, Sci. USA, 92, 4224-4228 (1995).
11. P. Y. Chou, G. D. Fasman, Adv. Enzymol. Relat. Areas. Mol. Biol., 47, 45-148 (1978).
12. M. Levitt, Biochemistory, 17, 4277-4285 (1978).
13. P. Y. Chou, G. D. Fasman, Biochemistory, 13, 222-245 (1974).
14. J. Garnier, D. J. Osguthorpe, B. Robson, J. Mol. Biol., 120, 97-120 (1978).
15. B. Rost, C. Sander, J. Mol. Biol., 232, 584-599 (1993).
16. D. T. Jones, J. Mol. Biol., 292, 195-202 (1999).
17. A. A. Salamov, V. V. Solovyev, J. Mol. Biol., 247, 11-15 (1995).
18. R. D. King, M. J. Sternberg, Protein Sci., 4, 2298-2310 (1996).
19. D. Frishman, P. Argos, Proteins, 27, 329-335 (1997).
20. J. A. Cuff, M. E. Clamp, A. S. Siddiqui, M. Finlay, G. J. Barton, Bioinformatics, 14, 892-893 (1998).
21. H. Kim, H. Park, Protein Eng., 16, 553-560 (2003).
22. J. J. Ward, L. J. McGuffin, B. F. Buxton, D. T. Jones, Bioinformatics, 19, 1650-1655 (2003).
23. B. Rost, Methods. Biochem. Anal., 44, 559-587 (2003).
24. P. Romero, Z. Obradovic, C. R. Kissinger, J. E. Villafranca, A. K. Dunker, Proc. IEEE Intl. Conf. Neural Networks, 1, 90-95 (1997).
25. R. Linding, L. J. Jensen, F. Diella, P. Bork, T. J. Gibson, R. B. Russell, Structure, 11, 1453-1459 (2003).
26. J. J. Ward, L. J. McGuffin, K. Bryson, B. F. Buxton, D. T. Jones, Bioinformatics, 20, 2138-2139 (2004).