A higher plant has three different types of RPA heterotrimeric complex

Journal of Biochemistry

Volumn 139, Issue 1, 2006, Pages 99-104

  Ishibashi, Toyotaka ^a   Kimura, Seisuke ^a   Sakaguchi, Kengo ^a  

^a TOKYO UNIVERSITY OF SCIENCE   (Japan)

Author keywords

DNA repair; DNA replication; Rice; RPA subunit

Indexed keywords

REPLICATION PROTEIN A;

AMINO ACID SEQUENCE; ARTICLE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; DNA METABOLISM; GENE IDENTIFICATION; GENETIC SCREENING; HIGHER PLANT; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN INTERACTION; RICE; TWO HYBRID SYSTEM;

CLONING, MOLECULAR; GENES, PLANT; ORYZA SATIVA; REPLICATION PROTEIN A;

ANIMALIA; EMBRYOPHYTA; ORYZA SATIVA;

EID: 32944481663     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/jb/mvj014     Document Type: Article

References (37)

1. Kornberg, A. and Baker, T. (1992) DNA Replication, Freeman, New York
2. Hubscher, U., Mega, G., and Podust, V.N. (1996) In DNA Replication in Eukaryotic Cells (DePamphilis, M.L., ed.) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
3. Fairman, M.P. and Stillman, B. (1988) Cellular factors required for multiple stages of SV40 DNA replication in vitro. EMBO J. 7, 1211-1218
4. Wold, M.S. and Kelly, T. (1988) Purification and characterization of replication protein A, a cellular protein required for in vitro replication of simian virus 40 DNA. Proc. Natl. Acad. Sci. USA 85, 2523-2527
5. Wold, M.S. (1997) Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism. Annu. Rev. Biochem. 66, 61-92
6. Iftode, C., Daniely, Y., and Borowiec, J.A. (1999) Replication protein A (RPA): the eukaryotic SSB. Crit. Rev. Biochem. Mol. Biol. 34, 141-180
7. Raderschall, E., Golub, E.I., and Haaf, T. (1999) Nuclear foci of mammalian recombination proteins are located at single-stranded DNA regions formed after DNA damage. Proc. Natl. Acad. Sci. USA 96, 1921-1926
8. Oakley, G.G., Loberg, L.I., Yao, J., Risinger, M.A., Yunker, R.L., Zernik-Kobak, M., Khanna, K.K., Lavin, M.F., Carty, M.P., and Dixon, K. (2001) UV-induced hyperphosphorylation of replication protein a depends on DNA replication and expression of ATM protein. Mol. Biol. Cell 12, 1199-1213
9. Wang, H., Guan, J., Perrault, A.R., Wang, Y., and Hiakis, G. (2001) Replication protein A2 phosphorylation after DNA damage by the coordinated action of ataxia telangiectasia-mutated and DNA-dependent protein kinase. Cancer Res. 61, 8554-8563
10. Gomes, X.V. and Wold, M.S. (1995) Structural analysis of human replication protein A. Mapping functional domains of the 70-kDa subunit. J. Biol. Chem. 270, 4534-4543
11. Gomes, X.V. and Wold, M.S. (1996) Functional domains of the 70-kilodalton subunit of human replication protein A. Biochemistry 35, 10558-10568
12. Brill, S.J. and Bastin-Shanower, S. (1998) Identification and characterization of the fourth single-stranded-DNA binding domain of replication protein A. Mol. Cell Biol. 18, 7225-7234
13. Bochkarev, A., Bochkareva, E., Frappier, L., and Edwards, A.M. (1999) The crystal structure of the complex of replication protein A subunits RPA32 and RPA14 reveals a mechanism for single-stranded DNA binding. EMBO J. 18, 4498-4504
14. Braun, K.A., Lao, Y., He, Z., Ingles, C.J., and Wold, M.S. (1997) Role of protein-protein interactions in the function of replication protein A (RPA): RPA modulates the activity of DNA polymerase alpha by multiple mechanisms. Biochemistry 36, 8443-8454
15. Lao, Y., Lee, C.G., and Wold, M.S. (1999) Replication protein A interactions with DNA. 2. Characterization of double-stranded DNA-binding/helix-destabilization activities and the role of the zinc-finger domain in DNA interactions. Biochemistry 38, 3974-3984
16. Binz, S.K., Lao, Y., Lowry, D.F., and Wold, M.S. (2003) The phosphorylation domain of the 32-kDa subunit of replication protein A (RPA) modulates RPA-DNA interactions. Evidence for an intersubunit interaction. J. Biol. Chem. 278, 35584-35591
17. Blackwell, L.J. and Borowiec, J.A. (1994) Human replication protein A binds single-stranded DNA in two distinct complexes. Mol. Cell Biol. 14, 3993-1001
18. Kim, C. and Wold, M.S. (1995) Recombinant human replication protein A binds to polynucleotides with low cooperativity. Biochemistry 34, 2058-2064
19. Blackwell, L.J., Borowiec, J.A., and Masrangelo, I.A. (1996) Single-stranded-DNA binding alters human replication protein A structure and facilitates interaction with DNA-dependent protein kinase. Mol. Cell Biol. 16, 4798-4807
20. Arunkumar, A.I., Stauffer, M.E., Bochkareva, E., Bochkarev, A., and Chazin, W.J. (2003) Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains. J. Biol. Chem. 278, 41077-11082
21. Keshav, K.F., Chen, C., and Dutta, A. (1995) Rpa4, a homolog of the 34-kilodalton subunit of the replication protein A complex. Mol. Cell Biol. 15, 3119-3128
22. Nagelhus, T.A., Haug, T., Singh, K.K., Keshav, K.F., Skorpen, F., Otterlei, M., Bharati, S., Lindmo, T., Benichou, S., Benarous, R., and Krokan, H.E. (1997) A sequence in the N-tenninal region of human uracil-DNA glycosylase with homology to XPA interacts with the C-tenninal part of the 34-kDa subunit of replication protein A. J. Biol. Chem. 272, 6561-6566
23. Bouziane, M., Miao, F., Bates, S.E., Somsouk, L., Sang, B.C., Denissenko, M., and O'Connor, T.R. (2000) Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene. Mutat. Res. 461, 15-29
24. Garcia-Maya, M.M. and Buck, K.W. (1997) Isolation and characterization of replication protein A (RP-A) from tobacco cells. FEBS Lett. 413, 181-184
25. Marwedel, T., Ishibashi, T., Lorbiecke, R., Jacob, S., Sakagucbi, K., and Sauter, M. (2003) Plant-specific regulation of replication protein A2 (OsRPA2) from rice during the cell cycle and in response to ultraviolet light exposure. Planta 217, 457-465
26. van der Knaap, E., Jagoueix, S., and Kende, H. (1997) Expression of an ortholog of replication protein Al (RPA1) is induced by gibberellin in deepwater rice. Proc. Natl. Acad. Sci. USA 94, 9979-9983
27. Ishibashi, T., Kimura, S., Furukawa, T., Hatanaka, M., Hashimoto, J., and Sakaguchi, K. (2001) Two types of replication protein A 70 kDa subunit in rice, Oryza sativa: molecular cloning, characterization, and cellular & tissue distribution. Gene 272, 335-343
28. Ishibashi, T., Koga, A., Yamamoto, T., Uchiyama, Y., Mori, Y., Hashimoto, J., Kimura, S., and Sakaguchi, K. (2005) Two types of replication protein A in seed plants. FEBS J. 272, 3270-3281
29. Baba, A., Hasezawa, S., and Syono, K. (1986) Cultivation of rice protoplasts and their transformation mediated by Agrobacterium spheroplast. Plant Cell Physiol. 27, 463-471
30. Miller, J.H. (1972) Experiments in Molecular Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
31. Miller, J.H. (1992) In A Short Course in Bacterial Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
32. Seo, S., Okamoto, M., Iwai, T., Iwano, M., Fukui, K., Isogai, A., Nakajima, N., and Ohashi, Y. (2000) Reduced levels of chloroplast FtsH protein in tobacco mosaic virus-infected tobacco leaves accelerate the hypersensitive reaction. Plant Cell 12, 917-932
33. Kimura, S., Suzuki, T., Yanagawa, Y., Yamamoto, T., Nakagawa, H., Tanaka, I., Hashimoto, J., and Sakaguchi, K. (2001) Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution hi mitotic and meiotic cell cycles. Plant J. 28, 643-653
34. Hata, S., Tsukamoto, T., Osumi, T., Hashimoto, J., and Suzuka, I. (1992) Analysis of carrot genes for proliferating cell nuclear antigen homologs with the aid of the polymerase chain reaction. Biochem. Biophys. Res. Commun. 184, 576-581
35. Kimura, S., Furukawa, T., Kasai, N., Mori, Y., Kitamoto, H.K., Sugawara, F., Hashimoto, J., and Sakaguchi, K. (2003) Functional characterization of two flap endonuclease-1 homologues in rice. Gene 314, 63-71
36. Tiranti, V., Rocchi, M., DiDonato, S., and Zeviani, M. (1993) Cloning of human and rat cDNAs encoding the mitochondrial single-stranded DNA-binding protein (SSB). Gene 126, 219-225
37. Curth, U., Urbanke, C., Greipel, J., Gerberding, H., Tiranti, V., and Zeviani, M. (1994) Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties. Eur. J. Biochem. 221, 435-443 105-112