The benefits of DNA microarrays in fundamental and applied bio-medicine

Materials Science and Engineering C

Volumn 26, Issue 2-3, 2006, Pages 354-359

  Lamartine, Jérôme ^a,b  

^a UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^b UNIVERSITÉ LYON 1   (France)

Author keywords

Cancer; DNA microarray; Expression profiling; Functional genomic

Indexed keywords

DNA MICROARRAY; EXPRESSION PROFILING; FUNCTIONAL GENOME;

ARRAYS; CHROMOSOMES; GENES; PROTEINS; SYNTHESIS (CHEMICAL);

DNA;

EID: 32844473007     PISSN: 09284931     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.msec.2005.10.068     Document Type: Conference Paper

References (27)

1. Finishing the euchromatic sequence of the human genome Nature 431 2004 931
2. D.A. Jackson, J.F. Iborra, E.M. Manders, and P.R. Cook Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei Mol. Biol. Cell 9 1998 1523
3. E.M. Southern Detection of specific sequences among DNA fragments separated by gel electrophoresis J. Mol. Biol. 98 1975 503
4. S.P. Fodor, J.L. Read, M.C. Pirrung, L. Stryer, A.T. Lu, and D. Solas Light-directed, spatially addressable parallel chemical synthesis Science 251 1991 767
5. M. Schena, D. Shalon, R.W. Davis, and P.O. Brown Quantitative monitoring of gene expression patterns with a complementary DNA microarray Science 270 1995 467
6. M.E. Chicurel, and D.D. Dalma-Weiszhausz Microarrays in pharmacogenomics-advances and future promise Pharmacogenomics 3 2002 589
7. J.F. Waring, and D.N. Halbert The promise of toxicogenomics Curr. Opin. Mol. Ther. 4 2002 229
8. J. Lamartine, N. Franco, P. Le Minter, P. Soularue, O. Alibert, J.J. Leplat, X. Gidrol, G. Waksman, and M. Martin Activation of an energy providing response in human keratinocytes after gamma-irradiation J. Cell. Biochem. 95 2005 620
9. M.J. van de Vijver, Y.D. He, L.J. van't Veer, H. Dai, A.A. Hart, D.W. Voskuil, G.J. Schreiber, J.L. Peterse, C. Roberts, M.J. Marton, M. Parrish, D. Atsma, A. Witteveen, A. Glas, L. Delahaye, T. van der Velde, H. Bartelink, S. Rodenhuis, E.T. Rutgers, S.H. Friend, and R. Bernards A gene-expression signature as a predictor of survival in breast cancer N. Engl. J. Med. 347 2002 1999
10. E. Huang, S.H. Cheng, H. Dressman, J. Pittman, M.H. Tsou, C.F. Horng, A. Bild, E.S. Iversen, M. Liao, C.M. Chen, M. West, J.R. Nevins, and A.T. Huang Gene expression predictors of breast cancer outcomes Lancet 361 2003 1590
11. S.L. Pomeroy, P. Tamayo, M. Gaasenbeek, L.M. Sturla, M. Angelo, M.E. McLaughlin, J.Y. Kim, L.C. Goumnerova, P.M. Black, C. Lau, J.C. Allen, D. Zagzag, J.M. Olson, T. Curran, C. Wetmore, J.A. Biegel, T. Poggio, S. Mukherjee, R. Rifkin, A. Califano, G. Stolovitzky, D.N. Louis, J.P. Mesirov, E.S. Lander, and T.R. Golub Prediction of central nervous system embryonal tumour outcome based on gene expression Nature 415 2002 436
12. M.A. Shipp, K.N. Ross, P. Tamayo, A.P. Weng, J.L. Kutok, R.C. Aguiar, M. Gaasenbeek, M. Angelo, M. Reich, G.S. Pinkus, T.S. Ray, M.A. Koval, K.W. Last, A. Norton, T.A. Lister, J. Mesirov, D.S. Neuberg, E.S. Lander, J.C. Aster, and T.R. Golub Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning Nat. Med. 8 2002 68
13. V. Devauchelle, S. Marion, N. Cagnard, S. Mistou, G. Falgarone, M. Breban, F. Letourneur, A. Pitaval, O. Alibert, C. Lucchesi, P. Anract, M. Hamadouche, X. Ayral, M. Dougados, X. Gidrol, C. Fournier, and G. Chiocchia DNA microarray allows molecular profiling of rheumatoid arthritis and identification of pathophysiological targets Genes Immun. 5 2004 597
14. R. Gonzalez, B. Masquelier, H. Fleury, B. Lacroix, A. Troesch, G. Vernet, and J.N. Telles Detection of human immunodeficiency virus type 1 antiretroviral resistance mutations by high-density DNA probe arrays J. Clin. Microbiol. 42 2004 2907
15. A. Maitra, Y. Cohen, S.E. Gillespie, E. Mambo, N. Fukushima, M.O. Hoque, N. Shah, M. Goggins, J. Califano, D. Sidransky, and A. Chakravarti The Human MitoChip: a high-throughput sequencing microarray for mitochondrial mutation detection Genome Res. 14 2004 812
16. Y. Takahashi, Y. Ishii, T. Nagata, M. Ikarashi, K. Ishikawa, and S. Asai Clinical application of oligonucleotide probe array for full-length gene sequencing of TP53 in colon cancer Oncology 64 2003 54
17. A. Levan Chromosome studies on some human tumors and tissues of normal origin, grown in vivo and in vitro at the Sloan-Kettering Institute Cancer 9 1956 648
18. B.J. Trask Human cytogenetics: 46 chromosomes, 46 years and counting Nat. Rev., Genet. 3 2002 769
19. D. Pinkel, R. Segraves, D. Sudar, S. Clark, I. Poole, D. Kowbel, C. Collins, W.L. Kuo, C. Chen, Y. Zhai, S.H. Dairkee, B.M. Ljung, J.W. Gray, and D.G. Albertson High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nat. Genet. 20 1998 207
20. D.G. Albertson Profiling breast cancer by array CGH Breast Cancer Res. Treat. 78 2003 289
21. A.E. Oostlander, G.A. Meijer, and B. Ylstra Microarray-based comparative genomic hybridization and its applications in human genetics Clin. Genet. 66 2004 488
22. B. Ren, F. Robert, J.J. Wyrick, O. Aparicio, E.G. Jennings, I. Simon, J. Zeitlinger, J. Schreiber, N. Hannett, E. Kanin, T.L. Volkert, C.J. Wilson, S.P. Bell, and R.A. Young Genome-wide location and function of DNA binding proteins Science 290 2000 2306
23. O. Harismendy, C.G. Gendrel, P. Soularue, X. Gidrol, A. Sentenac, M. Werner, and O. Lefebvre Genome-wide location of yeast RNA polymerase III transcription machinery EMBO J. 22 2003 4738
24. A.S. Weinmann, P.S. Yan, M.J. Oberley, T.H. Huang, and P.J. Farnham Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis Genes Dev. 16 2002 235
25. D.T. Odom, N. Zizlsperger, D.B. Gordon, G.W. Bell, N.J. Rinaldi, H.L. Murray, T.L. Volkert, J. Schreiber, P.A. Rolfe, D.K. Gifford, E. Fraenkel, G.I. Bell, and R.A. Young Control of pancreas and liver gene expression by HNF transcription factors Science 303 2004 1378
26. J. Ziauddin, and D.M. Sabatini Microarrays of cells expressing defined cDNAs Nature 411 2001 107
27. S. Baghdoyan, Y. Roupioz, A. Pitaval, D. Castel, E. Khomyakova, A. Papine, F. Soussaline, and X. Gidrol Quantitative analysis of highly parallel transfection in cell microarrays Nucleic Acids Res. 32 2004 e77