Assay of DNA-binding proteins with a dsDNA-coupled plate

Clinical Biochemistry

Volumn 39, Issue 2, 2006, Pages 167-175

  Wang, Jin K ^a   Li, Jian L ^b   Li, Min L ^a   Hua, Dong ^a   Chen, Hong M ^c  

^a SOUTHEAST UNIVERSITY   (China)

^b HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^c CHINA PHARMACEUTICAL UNIVERSITY   (China)

Author keywords

DNA binding protein; dsDNA coupled plate

Indexed keywords

CELL EXTRACT; DNA BINDING PROTEIN; DOUBLE STRANDED DNA; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; OLIGONUCLEOTIDE;

ANTIGEN BINDING; ARTICLE; COLORIMETRY; COST EFFECTIVENESS ANALYSIS; DNA BINDING; DNA PROBE; HELA CELL; PRIORITY JOURNAL; PROTEIN ANALYSIS; QUANTITATIVE ASSAY;

BIOLOGICAL ASSAY; DNA; HELA CELLS; HUMANS; NF-KAPPA B P50 SUBUNIT; PROTEIN BINDING; SP1 TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP-1;

EID: 32844471303     PISSN: 00099120     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.clinbiochem.2005.10.017     Document Type: Article

References (35)

1. C.O. Pabo, and R.T. Sauer Transcription factors: structural families and principles of DNA recognition Annu. Rev. Biochem. 61 1992 1053 1095
2. P.P. Pandolfi Transcription therapy for cancer Oncogene 20 2001 3116 3127
3. M.G. Fried, and D.M. Crothers Equilibria and kinetics of lac represser-operator interactions by polyacrylamide gel electrophoresis Nucleic Acids Res. 9 1981 6505 6525
4. J.K. Wang, T.X. Li, Y.F. Bai, Y. Zhu, and Z.H. Lu Fabrication of unimolecular double-stranded DNA microarrays on solid surfaces for probing DNA-protein/Drug Interactions Molecules 8 2003 153 168
5. M.L. Bulyk, X. Huang, Y. Choo, and G.M. Church Exploring the DNA-binding specificities of zinc fingers with DNA microarrays Proc. Natl. Acad. Sci. U. S. A. 98 2001 7158 7163
6. M.L. Bulyk, P.L.F. Johnson, and G.M. Church Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors Nucleic Acids Res. 30 2002 1255 1261
7. J.K. Wang, Y.F. Bai, T.X. Li, and Z.H. Lu DNA microarrays with unimolecular hairpin double-stranded DNA probes: fabrication and exploration of sequence-specific DNA/protein interactions J. Biochem. Biophy. Methods 55 2003 215 232
8. D.L. Shapiro, P.A. Sharp, W.W. Wahli, and M.J. Keller A high efficiency HeLa cell nuclear transcription extract DNA 7 1988 47 55
9. R. Sen, and D. Baltimore Inducibility of kappa immunoglobulin enhancer-binding protein NF-κB by a posttranslational mechanism Cell 47 1986 921 928
10. W.S. Dynan, and R. Tjian The promoter-specific transcription factor Sp1 binds to upstream sequences in the Sv40 early promoter Cell 35 1983 79 87
11. D. Bohmann, and R. Tjian Biochemical analysis of transcriptional activation by Jun: differential activity of c- and v-Jun Cell 59 1989 709 717
12. I.A. Udalova, R. Mott, D. Field, and D. Kwiatkowski Quantitative prediction of NF-kappa B DNA-protein interactions Proc. Natl. Acad. Sci. U. S. A. 99 2002 8167 8172
13. A.M. Benotman, M.F. Hoylaerts, D. Collen, and A. Belayew Nonisotopic quantitative analysis of protein-DNA interactions at equilibrium Anal. Biochem. 250 2 1997 181 185
14. I.A. McKay, L. Kirby, E.V. Volyanik, V. Kumar, P.W. Wong, and S.A. Bustin An enzyme-linked immunosorbent assay for the detection of agents which interfere with the DNA binding activities of transcription factors-Exemplified by NF-IL6 Anal. Biochem. 265 1 1998 28 34
15. P. Renard, I. Ernest, A. Houbion, M. Art, H.L. Calvez1, and M. Raes Development of a sensitive multi-well colorimetric assay for active NF-κB Nucleic Acids Res. 29 4 2001 e21
16. Z. Shen, J. Peedikayil, G.K. Olson, P.D. Siebert, and Y. Fang Multiple transcription factor profiling by enzyme-linked immunoassay BioTechniques 32 2002 1168 1177
17. C. Rosenau, D. Emery, B. Kaboord, and M.W. Qoronfleh Development of a high-throughput plate-based chemiluminescent transcription factor assay J. Biomol. Screen. 9 4 2004 334 342
18. S.V. Gupta, R.M. McGowen, D.M. Callewaert, T.R. Brown, Y. Li, and F.H. Sarkar Quantitative chemiluminescent immunoassay for NF-kappaB-DNA binding activity J. Immunoass. Immunochem. 26 2 2005 125 143
19. M. Carey, and S.T. Smale Transcriptional regulation in eukaryotes: conceptions, strategies and techniques 2001 The Cold Spring Harbor Laboratory Press
20. V. Delage, J.M. Teulon, L. Bellanger, P. Seguin, F. Descotes, and S. Saez Microtiter plate immunoenzymometric assay for estrogen receptor Clin. Chem. 42 12 1996 1955 1960
21. M. Damberg, J. Ekblom, and L. Oreland Chronic pharmacological treatment with certain antidepressants alters the expression and DNA-binding activity of transcription factor AP-2 Life Sci. 68 2000 669 678
22. R. Pokroy, Y. Tendler, A. Pollack, O. Zinder, and G. Weisinger p53 expression in the normal murine eye Invest. Ophth. Visual Sci. 43 6 2002 1736 1941
23. Y.N. Harada, N. Shiomi, M. Koike, M. Ikawa, M. Okabe, and S. Hirota Postnatal growth failure, short life span, and early onset of cellular senescence and subsequent immortalization in mice lacking the xeroderma pigmentosum group G gene Mol. Cell. Biol. 19 3 1999 2366 2372
24. G. Weisinger, Y. Tendler, and O. Zinder Quantification of p53 expression in the nervous system Brain Res. Protoc. 6 2000 71 79
25. M.L. Gubler, and P. Abarzua Nonradioactive assay for sequence-specific DNA binding proteins BioTechniques 18 6 1995 1011 1014 (1008)
26. E. Jagelska, V. Brazda, S. Pospisilova, B. Vojtesek, and E. Palecek New ELISA technique for analysis of p53 protein/DNA binding properties J. Immunol. Methods 267 2 2002 227 235
27. J. Linnell, R. Mott, S. Field, D.P. Kwiatkowski, J. Ragoussis, and I.A. Udalova Quantitative high-throughput analysis of transcription factor binding specificities Nucleic Acids Res. 32 4 2004 e44
28. T. Egener, E. Roulet, M. Zehnder, P. Bucher, and N. Mermod Proof of concept for microarray-based detection of DNA-binding oncogenes in cell extracts Nucleic Acids Res. 33 8 2005 e79
29. A.S. Baldwin Control of oncogenesis and cancer therapy resistance by the transcription factor NF-kB J. Clin. Invest. 107 2001 241 246
30. A.S. Baldwin Series introduction: the transcription factor NF-kappaB and human disease J. Clin. Invest. 107 2001 3 6
31. L.L. Ko, and C. Prives Control of oncogenesis and cancer therapy resistance by the transcription factor NF-κB Genes Dev. 10 1996 1054 1072
32. H. Harant, B. Wol, and I.J.D. Lindley 1α, 25-Dihydroxyvitamin D3 decreases DNA binding of nuclear factor-κB in human fibroblasts FEBS Lett. 436 1998 329 334
33. A.S. Baldwin p53-puzzle and paradigm J. Clin. Invest. 107 2001 241 246
34. F. Schwaerzenberg-Bar-Yoseph, M. Armori, and E. Karnieli The tumor suppressor p53 down-regulates glucose transporters GLUT1 and GLUT4 gene expression Cancer Res. 64 2004 2627 2633
35. R. van den Berg, G.R. Haenen, H. van den Berg, and A. Bast Transcription factor NF-kappaB as a potential biomarker for oxidative stress Br. J. Nutr. 86 Suppl. 1 2001 S121 S127