PeroxiBase: A class III plant peroxidase database

Phytochemistry

Volumn 67, Issue 6, 2006, Pages 534-539

  Bakalovic, Nenad ^a   Passardi, Filippo ^a   Ioannidis, Vassilios ^b   Cosio, Claudia ^a   Penel, Claude ^a   Falquet, Laurent ^b   Dunand, Christophe ^a  

^a UNIVERSITY OF GENEVA   (Switzerland)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

Author keywords

Database; Evolution; Multigenic family; Peroxidases; Phylogeny

Indexed keywords

EMBRYOPHYTA;

EID: 32644479903     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2005.12.020     Document Type: Short Survey

References (16)

1. S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
2. Arabidopsis Genome Initiative, 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
3. Q. Dong, S.D. Schlueter, and V. Brendel PlantGDB, plant genome database and analysis tools Nucleic Acids Res. 32 2004 D354 D359
4. L. Duroux, and K.G. Welinder The peroxidase gene family in plants: a phylogenetic overview J. Mol. Evol. 57 2003 397 407
5. S.A. Goff, D. Ricke, T.H. Lan, G. Presting, R. Wang, M. Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, D. Hadley, D. Hutchison, C. Martin, F. Katagiri, B.M. Lange, T. Moughamer, Y. Xia, P. Budworth, J. Zhong, T. Miguel, U. Paszkowski, S. Zhang, M. Colbert, W.L. Sun, L. Chen, B. Cooper, S. Park, T.C. Wood, L. Mao, P. Quail, R. Wing, R. Dean, Y. Yu, A. Zharkikh, R. Shen, S. Sahasrabudhe, A. Thomas, R. Cannings, A. Gutin, D. Pruss, J. Reid, S. Tavtigian, J. Mitchell, G. Eldredge, T. Scholl, R.M. Miller, S. Bhatnagar, N. Adey, T. Rubano, N. Tusneem, R. Robinson, J. Feldhaus, T. Macalma, A. Oliphant, and S. Briggs A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) Science 296 2002 92 100
6. H. Greppin, C. Penel, and T. Gaspar Molecular and Physiological Aspects of Plant Peroxidases 1986 University of Geneva Switzerland
7. M. Pagni, C. Iseli, T. Junier, L. Falquet, V. Jongeneel, and P. Bucher trEST, trGEN and Hits: access to databases of predicted protein sequences Nucleic Acids Res. 29 2001 148 151
8. M. Pagni, V. Ioannidis, L. Cerutti, M. Zahn-Zabal, C.V. Jongeneel, and L. Falquet MyHits: a new interactive resource for protein annotation and domain identification Nucleic Acids Res. 32 2004 W332 W335
9. F. Passardi, D. Longet, C. Penel, and C. Dunand The class III peroxidase multigenic family in rice and its evolution in land plants Phytochemistry 65 2004 1879 1893
10. F. Passardi, C. Cosio, C. Penel, and C. Dunand Peroxidases have more functions than a Swiss army knife Plant Cell Rep. 24 2005 255 265
11. S. Rudd openSputnik: a database to establish comparative plant genomics using unsaturated sequence collections Nucleic Acids Res. 33 2005 D622 D627
12. M. Tognolli, C. Penel, H. Greppin, and P. Simon Analysis and expression of the class III peroxidase large gene family in Arabidopsis thaliana Gene 288 2002 129 138
13. K.G. Welinder Plant peroxidases: structure-function relationships C. Penel T. Gaspar H. Greppin Plant Peroxidases 1992 University of Geneva Switzerland
14. K.G. Welinder, A.F. Justesen, I.V. Kjaersgard, R.B. Jensen, S.K. Rasmussen, H.M. Jespersen, and L. Duroux Structural diversity and transcription of class III peroxidases from Arabidopsis thaliana Eur. J. Biochem. 269 2002 6063 6081
15. J. Yu, S. Hu, J. Wang, G.K. Wong, S. Li, B. Liu, Y. Deng, L. Dai, Y. Zhou, X. Zhang, M. Cao, J. Liu, J. Sun, J. Tang, Y. Chen, X. Huang, W. Lin, C. Ye, W. Tong, L. Cong, J. Geng, Y. Han, L. Li, W. Li, G. Hu, J. Li, Z. Liu, Q. Qi, T. Li, X. Wang, H. Lu, T. Wu, M. Zhu, P. Ni, H. Han, W. Dong, X. Ren, X. Feng, P. Cui, X. Li, H. Wang, X. Xu, W. Zhai, Z. Xu, J. Zhang, S. He, J. Xu, K. Zhang, X. Zheng, J. Dong, W. Zeng, L. Tao, J. Ye, J. Tan, X. Chen, J. He, D. Liu, W. Tian, C. Tian, H. Xia, Q. Bao, G. Li, H. Gao, T. Cao, W. Zhao, P. Li, W. Chen, Y. Zhang, J. Hu, S. Liu, J. Yang, G. Zhang, Y. Xiong, Z. Li, L. Mao, C. Zhou, Z. Zhu, R. Chen, B. Hao, W. Zheng, S. Chen, W. Guo, M. Tao, L. Zhu, L. Yuan, and H. Yang A draft sequence of the rice genome (Oryza sativa L. ssp. indica) Science 296 2002 79 92
16. M. Zamocky Phylogenetic relationships in class I of the superfamily of bacterial, fungal, and plant peroxidases Eur. J. Biochem. 271 2004 3297 3309