-
2
-
-
23044525766
-
Speeding up the DI-ALIGN multiple alignment program by using the 'greedy alignment of biological sequences library' (GABIOS-LIB)
-
Abdeddaïm, S. and Morgenstern, B. (2001) Speeding up the DI-ALIGN multiple alignment program by using the 'greedy alignment of biological sequences library' (GABIOS-LIB). Proceedings Journëes Ouvertes: Biologie, Informatique, Mathématiques (JOBlM 2000), volume 2066 of LNCS, pp. 1-11.
-
(2001)
Proceedings Journëes Ouvertes: Biologie, Informatique, Mathématiques (JOBlM 2000), Volume 2066 of LNCS
, vol.2066
, pp. 1-11
-
-
Abdeddaïm, S.1
Morgenstern, B.2
-
3
-
-
0000303438
-
The multiple sequence alignment problem in biology
-
Carrillo, H. and Lipman, D. (1988) The multiple sequence alignment problem in biology. SIAM J. Applied Math., 48, 1073-1082.
-
(1988)
SIAM J. Applied Math.
, vol.48
, pp. 1073-1082
-
-
Carrillo, H.1
Lipman, D.2
-
4
-
-
0030996742
-
Match-Box server: A multiple sequence alignment tool placing emphasis on reliability
-
Depiereux, L., Baudoux, G., Briffeuil, P., Reginster, I., Boll, X.D., Vinals, C. and Feytmans, E. (1997) Match-Box server: a multiple sequence alignment tool placing emphasis on reliability. CABIOS, 13, 249-256.
-
(1997)
CABIOS
, vol.13
, pp. 249-256
-
-
Depiereux, L.1
Baudoux, G.2
Briffeuil, P.3
Reginster, I.4
Boll, X.D.5
Vinals, C.6
Feytmans, E.7
-
5
-
-
0023084055
-
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
-
Feng, D.F. and Doolittle, R.F. (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J. Mol. Evol., 25, 351-360.
-
(1987)
J. Mol. Evol.
, vol.25
, pp. 351-360
-
-
Feng, D.F.1
Doolittle, R.F.2
-
6
-
-
0029366816
-
Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment
-
Gupta, S., Kececioglu, J. and Schäffer, A. (1995) Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment. J. Comp. Biol., 2, 459-472.
-
(1995)
J. Comp. Biol.
, vol.2
, pp. 459-472
-
-
Gupta, S.1
Kececioglu, J.2
Schäffer, A.3
-
7
-
-
0024234855
-
CLUSTAL-a package for performing multiple sequence alignment on a microcomputer
-
Higgins, D. and Sharp, P. (1988) CLUSTAL-a package for performing multiple sequence alignment on a microcomputer. Gene, 73, 237-244.
-
(1988)
Gene
, vol.73
, pp. 237-244
-
-
Higgins, D.1
Sharp, P.2
-
9
-
-
0037010180
-
Quality assessment of multiple alignment programs
-
Lassmann, T. and Sonnhammer, E. (2002) Quality assessment of multiple alignment programs. FEBS Lett., 529, 126-130.
-
(2002)
FEBS Lett.
, vol.529
, pp. 126-130
-
-
Lassmann, T.1
Sonnhammer, E.2
-
10
-
-
0032945593
-
DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
-
Morgenstern, B. (1999) DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics, 15, 211-218.
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
11
-
-
0029861894
-
Multiple DNA and protein sequence alignment based on segment-to-segment comparison
-
Morgenstern, B., Dress, A. and Werner, T. (1996) Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc. Natl Acad. Sci. USA, 93, 12098-12103.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 12098-12103
-
-
Morgenstern, B.1
Dress, A.2
Werner, T.3
-
12
-
-
0030497992
-
Progressive multiple alignment with constraints
-
Myers, G., Selznick, S., Zhang, Z. and Miller, W. (1996) Progressive multiple alignment with constraints. J. Comp. Biol., 3, 563-572.
-
(1996)
J. Comp. Biol.
, vol.3
, pp. 563-572
-
-
Myers, G.1
Selznick, S.2
Zhang, Z.3
Miller, W.4
-
13
-
-
0036208872
-
Recent progress in multiple sequence alignment: A survey
-
Notredame, C. (2002) Recent progress in multiple sequence alignment: a survey. Pharmacogenomics, 3, 131-144.
-
(2002)
Pharmacogenomics
, vol.3
, pp. 131-144
-
-
Notredame, C.1
-
14
-
-
0034623005
-
T-COFFEE: A novel method for fast and accurate multiple sequence alignment
-
Notredame, C., Higgins, D. and Heringa, J. (2000) T-COFFEE: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol., 302, 205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
15
-
-
0026100921
-
A workbench for multiple alignment construction and analysis
-
Schuler, G.D., Altschul, S.F. and Lipman, D.J. (1991) A workbench for multiple alignment construction and analysis. Proteins: Struct. Funct. Genet., 9, 180-190.
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.9
, pp. 180-190
-
-
Schuler, G.D.1
Altschul, S.F.2
Lipman, D.J.3
-
16
-
-
0345676554
-
Multiple sequence alignment with the divide-and-conquer method
-
Stoye, J. (1998) Multiple sequence alignment with the divide-and-conquer method. Gene, 211, GC45-GC56.
-
(1998)
Gene
, vol.211
-
-
Stoye, J.1
-
17
-
-
0024245156
-
A flexible method to align large numbers of biological sequences
-
Taylor, W.R. (1988) A flexible method to align large numbers of biological sequences. J. Mol. Evol., 28, 161-169.
-
(1988)
J. Mol. Evol.
, vol.28
, pp. 161-169
-
-
Taylor, W.R.1
-
18
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J., Higgins, D. and Gibson, T. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
19
-
-
0032988850
-
BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs
-
Thompson, J., Plewniak, F. and Poch, O. (1999) BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics, 15, 87-88.
-
(1999)
Bioinformatics
, vol.15
, pp. 87-88
-
-
Thompson, J.1
Plewniak, F.2
Poch, O.3
-
20
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
Thompson, J., Plewniak, F. and Poch, O. (1999) A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res., 27, 2682-2690.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2682-2690
-
-
Thompson, J.1
Plewniak, F.2
Poch, O.3
-
21
-
-
0029884395
-
A general method for fast multiple sequence alignment
-
Tönges, U., Perrey, S., Stoye, J. and Dress, A. (1996) A general method for fast multiple sequence alignment. Gene, 172, GC33-GC41.
-
(1996)
Gene
, vol.172
-
-
Tönges, U.1
Perrey, S.2
Stoye, J.3
Dress, A.4
-
22
-
-
0026036377
-
Motif recognition and alignment for many sequences by comparison of dot-matrices
-
Vingron, M. and Argos, P. (1991) Motif recognition and alignment for many sequences by comparison of dot-matrices. J. Mol., Biol., 218, 33-43.
-
(1991)
J. Mol., Biol.
, vol.218
, pp. 33-43
-
-
Vingron, M.1
Argos, P.2
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