Inferring human history: Clues from Y-chromosome haplotypes

Cold Spring Harbor Symposia on Quantitative Biology

Volumn 68, Issue , 2003, Pages 487-493

  Underhill, P A ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

AFRICA; ASIA; CONFERENCE PAPER; DNA SEQUENCE; FEMALE; GENOME; HAPLOTYPE; HUMAN; HUMAN GENOME; MALE; POPULATION GENETICS; PRIORITY JOURNAL; Y CHROMOSOME; AFRICA SOUTH OF THE SAHARA; ARTICLE; ASIAN; GEOGRAPHY; HAPLOGROUP; HISTORY OF MEDICINE; INHERITANCE; SPATIOTEMPORAL ANALYSIS;

EID: 3242711139     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2003.68.487     Document Type: Conference Paper

References (30)

1. Bergen A.W., Wang C.-Y., Tsai J., Jefferson K., Dey C., Smith K.D., Park S.-C., Tsai S.-J., and Goldman D. 1999. An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping. Ann. Hum. Genet. 63: 63.
2. Cann R.L. 2001. Genetic clues to dispersal in human population: Retracing the past from the present. Science 291: 1742.
3. Capelli C., Wilson J.F., Richards M., Stumpf M.P.H, Gratrix F., Oppenheimer S., Underhill P.A., Pascali V.L., Ko T.-M, and Goldstein D.B. 2001. A predominantly indigenous paternal heritage for the Austronesian speaking peoples of insular South East Asia and Oceania. Am. J. Hum. Genet. 68: 432.
4. Cavalli-Sforza L.L. and Feldman M.W. 2003. The application of molecular genetic approaches to the study of human diversity. Nat. Genet. 33: 267.
5. Cavalli-Sforza L.L., Menozzi P., and Piazza A. 1994. The history and geography of human genes. Princeton University Press, Princeton, New Jersey.
6. Cruciani F., Santolamazza P., Shen P., Macaulay V., Moral P., Olckers A., Modiano D., Destro-Bisol G., Holmes S., Coia V., Wallace D.C., Oefner P.J., Torroni A., Cavalli-Sforza L.L., Scozzari R., and Underhill P.A. 2002. An Asia to Sub-Saharan Africa back migration is supported by high-resolution analysis of human Y chromosome haplotypes. Am. J. Hum. Genet. 70: 1197.
7. de Knijff P. 2000. Messages through bottlenecks: On the combined use of slow and fast evolving polymorphic markers on the human Y chromosome. Am. J. Hum. Genet. 67: 1055.
8. Diamond J. and Bellwood P. 2003. Farmers and their languages: The first expansions. Science 300: 597.
9. Karafet T.M., Osipova L.P., Gubina M.A., Posukh O.L., Zegura S.L., and Hammer M.F. 2002. High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Hum. Biol. 74: 761.
10. Karafet T., Xu L., Du R., Wang W., Feng S., Wells R.S., Redd A.J., Zegura S.L., and Hammer M.F. 2001. Paternal population history of East Asia: Sources, patterns, and microevolutionary processes. Am. J. Hum. Genet. 69: 615.
11. Kayser M., Brauer S., Weiss G., Schiefenhövel W., Underhill P.A., and Stoneking M. 2001. Independent histories of human Y chromosomes from Melanesia and Australia. Am. J. Hum. Genet. 68: 173.
12. Kayser M., Brauer S., Weiss G., Underhill P.A., Roewer L., Schiefenhövel W., and Stoneking M. 2000. Melanesian origin of Polynesian Y chromosomes. Curr. Biol. 10: 1237.
13. Ke Y., Su B., Son X., Lu D., Chen L., Li H., Qi C., Marzuki S., Deka R., Underhill P., Xiao C., Shriver M., Lell J., Wallace D., Wells R.S., Seielstad M., Oefner P., Zhu D., Jin J., Huang W., Chakraborty R., Chen Z., and Jin L. 2001. African origin of modern humans in East Asia: A tale of 12,000 Y chromosomes. Science 292: 1151.
14. Kivisild T., Rootsi S., Metspalu M., Mastana S., Kaldma K., Parik J., Metspalu E., Adojaan M., Tolk H.-V., Stepanov V., Gölge M., Usanga E., Papiha S.S., Cinnioglu C., King R., Cavalli-Sforza L., Underhill P.A., and Villems R. 2003. The genetic heritage of earliest settlers persist in both the Indian tribal and caste populations. Am. J. Hum. Genet. 72: 313.
15. Knight A., Underhill P.A., Zhivotovsky L.A., Mortensen H.M., Ruhlen M., and Mountain J.L. 2003. African Y chromosome and mtDNA diversity and the antiquity of click languages. Curr. Biol. 13: 464.
16. Knowles L.L. and Maddison W.P. 2002. Statistical phylogeography. Mol. Ecol. 11: 2623.
17. Lell J.T., Sukernik R.I., Starikovskaya Y.B., Su B., Jin L., Schurr T.G., Underhill P.A., and Wallace D.C. 2002. The duel origin and Siberian affinities of Native American Y chromosomes. Am. J. Hum. Genet. 70: 192.
18. Mountain J.L., Knight A., Jobin M., Gignoux C., Miller A., Lin A.A., and Underhill P.A. 2002. SNPSTRs: Empirically derived, rapidly typed, autosomal haplotypes for inference of population history and mutational processes. Genome Res. 12: 1766.
19. Owens K. and King M.-C. 1999. Genomic views of human history. Science 286: 451.
20. Semino O., Santachiara-Benerecetti A.S., Falaschi F., Cavalli-Sforza L.L., and Underhill P.A. 2002. Ethiopians and Khoisan share the deepest clades of the human Y-chromosome phylogeny. Am. J. Hum. Genet. 70: 265.
21. Semino O., Passarino G., Oefner P.J., Lin A.A., Arbuzova S., Beckman L.E., De Benedictis G., Francalacci P., Kouvatsi A., Limborska S., Marcikiae M., Mika A., Mika B., Primorac D., Santachiara-Benerecetti A., Cavalli-Sforza L.L., and Underhill P.A. 2000. The genetic legacy of Palaeolithic Homo sapiens sapiens in extant Europeans: A Y-chromosome perspective. Science 290: 1155.
22. Stringer C. 2000. Coasting out of Africa. Nature 405: 24.
23. Tajima A., Pan I.-H., Fucharoen G., Fucharoen S., Matsuo M., Tokunaga K., Juji T., Hayami M., Omoto K., and Horai S. 2002. Three major lineages of Asian Y chromosomes: Implications for the peopling of east and southeast Asia. Hum. Genet. 110: 80.
24. Thangaraj K., Singh L., Reddy A.G., Rao V.R., Underhill P.A., Pierson M., Frame I.G., and Hagelberg E. 2003. Genetic affinities of the Andaman Islanders, a vanishing human population. Curr. Biol. 13: 86.
25. Underhill P.A. and Roseman C.C. 2001. The case for an African rather than an Asian origin of the human Y-chromosome YAP insertion. In Recent advances in human biology, vol. 8: Genetic, linguistic and archaeological perspectives on human diversity in Southeast Asia (ed. L. Jin et al.), p. 43. World Scientific, River Edge, New Jersey.
26. Underhill P.A., Passarino G., Lin A.A., Marzuki S., Cavalli-Sforza L.L., and Chambers G. 2001a. Maori origins, Y chromosome haplotypes and implications for human history in the Pacific. Hum. Mutat. 17: 271.
27. Underhill P.A., Passarino G., Lin A.A., Shen P., Foley R.A., Mirazón Lahr M., Oefner P.J., and Cavalli-Sforza L.L. 2001b. The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann. Hum. Genet. 65: 43.
28. Underhill P.A., Shen P., Lin A.A., Jin L., Passarino G., Yang W.H., Kauffman E., Bonné-Tamir B., Bertranpetit J., Francalacci P., Ibrahim M., Jenkins T., Kidd J.R., Mehdi S.Q., Seielstad M.T., Wells R.S., Piazza A., Davis R.W., Feldman M.W., Cavalli-Sforza L.L., and Oefner P.J. 2000. Y chromosome sequence variation and the history of human populations. Nat. Genet. 26: 358.
29. White T.D., Asfaw B., DeGusta D., Gilbert H., Richards G.D., Suwa G., and Howell F.C. 2003. Pleistocene Homo sapiens from Middle Awash, Ethiopia. Nature 423: 742.
30. Y Chromosome Consortium. 2002. A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res. 12: 339.