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Volumn 53, Issue 7-8, 2004, Pages 315-322

Computational chemistry with RNA secondary structures

Author keywords

Nucleic acids; RNA evolution; RNA folding; Structure prediction

Indexed keywords

ALGORITHMS; CONFORMATIONS; DNA; FREE ENERGY; HYDROGEN BONDS; MATHEMATICAL MODELS; REACTION KINETICS; THERMODYNAMICS;

EID: 3242708388     PISSN: 00229830     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper
Times cited : (4)

References (47)
  • 1
    • 0024214064 scopus 로고
    • Conserved sequences and structures of group I introns: Building an active site for RNA catalysis - A review
    • T. R. Cech, Conserved sequences and structures of group I introns: building an active site for RNA catalysis - a review. Gene 73 (1988) 259.
    • (1988) Gene , vol.73 , pp. 259
    • Cech, T.R.1
  • 2
    • 0030632073 scopus 로고    scopus 로고
    • Density of states, metastable states, and saddle points. Exploring the energy landscape of an RNA molecule
    • T. Gaasterland, P. Karp, K. Karplus, C. Ouzounis, C. Sander, and A. Valencia, editors, Menlo Park, CA. AAAI Press
    • J. Cupal, C. Flamm, A. Renner, P. F. Stadler, Density of states, metastable states, and saddle points. Exploring the energy landscape of an RNA molecule. In T. Gaasterland, P. Karp, K. Karplus, C. Ouzounis, C. Sander, and A. Valencia, editors, Proceedings of the ISMB-97, Menlo Park, CA, 1997. AAAI Press, pp. 88-91.
    • (1997) Proceedings of the ISMB-97 , pp. 88-91
    • Cupal, J.1    Flamm, C.2    Renner, A.3    Stadler, P.F.4
  • 3
    • 0039577308 scopus 로고    scopus 로고
    • Dynamic programming algorithm for the density of states of RNA secondary structures
    • R. Hofstädt, T. Lengauer, M. Löffler and D. Schomburg, editors, Leipzig (Germany), Univeristät Leipzig
    • J. Cupal, I. L. Hofacker, P. F. Stadler, Dynamic programming algorithm for the density of states of RNA secondary structures. In R. Hofstädt, T. Lengauer, M. Löffler and D. Schomburg, editors, Computer Science and Biology 96 (Proceedings of the German Conference on Bioinformatics), Leipzig (Germany), Univeristät Leipzig, 1996, pp. 184-186.
    • (1996) Computer Science and Biology 96 (Proceedings of the German Conference on Bioinformatics) , pp. 184-186
    • Cupal, J.1    Hofacker, I.L.2    Stadler, P.F.3
  • 6
    • 0034021259 scopus 로고    scopus 로고
    • RNA folding kinetics at elementary step resolution
    • C. Flamm, W. Fontana, I. Hofacker, P. Schuster, RNA folding kinetics at elementary step resolution. RNA 6 (2000) 325.
    • (2000) RNA , vol.6 , pp. 325
    • Flamm, C.1    Fontana, W.2    Hofacker, I.3    Schuster, P.4
  • 12
    • 0003274263 scopus 로고
    • Properties of chemically interesting potential energy surfaces
    • Springer-Verlag, Berlin
    • D. Heidrich, W. Kliesch, W. Quapp, Properties of Chemically Interesting Potential Energy Surfaces, volume 56 of Lecture Notes in Chemistry. Springer-Verlag, Berlin, 1991.
    • (1991) Lecture Notes in Chemistry , vol.56
    • Heidrich, D.1    Kliesch, W.2    Quapp, W.3
  • 14
    • 0037010001 scopus 로고    scopus 로고
    • Towards true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations
    • P. Hobza, J. Šponer, Towards true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations. J. Amer. Chem. Soc. 124 (2002) 11802.
    • (2002) J. Amer. Chem. Soc. , vol.124 , pp. 11802
    • Hobza, P.1    Šponer, J.2
  • 16
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • I. L. Hofacker, Vienna RNA secondary structure server. Nucl. Acids Res. 31 (2003) 3429.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 3429
    • Hofacker, I.L.1
  • 17
  • 22
    • 10044255454 scopus 로고    scopus 로고
    • Minimal cycle basis, outerplanar graphs
    • J. Leydold, P. F. Stadler, Minimal cycle basis, outerplanar graphs. Elec. J. Comb., 5:R16, 1998. See http://www.combinatorics.org.
    • (1998) Elec. J. Comb. , vol.5
    • Leydold, J.1    Stadler, P.F.2
  • 42
    • 0018254569 scopus 로고
    • RNA secondary structure: A complete mathematical analysis
    • M. S. Waterman, T. F. Smith, RNA secondary structure: A complete mathematical analysis. Math. Biosc. 42 (1978) 257.
    • (1978) Math. Biosc. , vol.42 , pp. 257
    • Waterman, M.S.1    Smith, T.F.2
  • 44
    • 0033080745 scopus 로고    scopus 로고
    • Complete suboptimal folding of RNA and the stability of secondary structures
    • S. Wuchty, W. Fontana, I. L. Hofacker, P. Schuster, Complete suboptimal folding of RNA and the stability of secondary structures. Biopolymers 49 (1999) 145.
    • (1999) Biopolymers , vol.49 , pp. 145
    • Wuchty, S.1    Fontana, W.2    Hofacker, I.L.3    Schuster, P.4
  • 45
    • 0001947120 scopus 로고
    • The use of dynamic programming algorithms in RNA secondary structure prediction
    • M. S. Waterman, editor, CRC Press
    • M. Zuker, The use of dynamic programming algorithms in RNA secondary structure prediction. In M. S. Waterman, editor, Mathematical Methods for DNA Sequences, CRC Press, 1989., pp. 159-184.
    • (1989) Mathematical Methods for DNA Sequences , pp. 159-184
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.