-
1
-
-
0030017889
-
Analysis of topological and nontopological structural similarities in the PDB: New examples with old structures
-
Alexandrov,N.N. and Fischer,D. (1996) Analysis of topological and nontopological structural similarities in the PDB: new examples with old structures. Proteins: Struct. Funct. Genet., 25, 354-365.
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.25
, pp. 354-365
-
-
Alexandrov, N.N.1
Fischer, D.2
-
2
-
-
0030341663
-
A sequence similarity search algorithm based on a probabilistic interpretation of an alignment scoring system
-
States,D.J., Agarwal,P., Gaasterland,T., Hunter,L. and Smith,R.F. (eds), AAAI Press, Menlo Park, CA
-
Bucher,P. and Hoffmann,K. (1996) A sequence similarity search algorithm based on a probabilistic interpretation of an alignment scoring system. In States,D.J., Agarwal,P., Gaasterland,T., Hunter,L. and Smith,R.F. (eds), Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology (ISMB '96). AAAI Press, Menlo Park, CA, pp. 44-50.
-
(1996)
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology (ISMB '96)
, pp. 44-50
-
-
Bucher, P.1
Hoffmann, K.2
-
3
-
-
0003516147
-
-
Cambridge University Press, Cambridge
-
Durbin,R., Eddy,S.R., Krogh,A. and Mitchison,G. (1998) Biological Sequence Analysis. Cambridge University Press, Cambridge.
-
(1998)
Biological Sequence Analysis
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.4
-
4
-
-
0021683974
-
The crystal structure of human deoxyhaemoglobin at 1.74aÌ resolution
-
Fermi,G., Perutz,M., Shaanan,B. and Fourme,R. (1984) The crystal structure of human deoxyhaemoglobin at 1.74aÌ resolution. J. Mol. Biol., 175, 159.
-
(1984)
J. Mol. Biol.
, vol.175
, pp. 159
-
-
Fermi, G.1
Perutz, M.2
Shaanan, B.3
Fourme, R.4
-
5
-
-
0009928832
-
Explaining and controlling ambiguity in dynamic programming
-
Technical report, Faculty of Technology, Bielefeld University, Bielefeld
-
Giegerich,R. (2000) Explaining and controlling ambiguity in dynamic programming. In Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching, Technical report, Faculty of Technology, Bielefeld University, Bielefeld.
-
(2000)
Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
-
-
Giegerich, R.1
-
6
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
Gotoh,O. (1982) An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 705-708.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
7
-
-
0029086157
-
The structure of deoxy- and oxy-leghaemoglobin from lupin
-
Harutyunyan,E.H., Safonova,T.N., Kuranova,I.P., Popov,A.N., Teplyakov,A.V., Obmolova,G.V., Rusakov,A.A., Vainshtein,B.K., Dodson,G.G., Wilson,J.C. and Perutz,M.F. (1995) The structure of deoxy- and oxy-leghaemoglobin from lupin. J. Mol. Biol., 251, 104-115.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 104-115
-
-
Harutyunyan, E.H.1
Safonova, T.N.2
Kuranova, I.P.3
Popov, A.N.4
Teplyakov, A.V.5
Obmolova, G.V.6
Rusakov, A.A.7
Vainshtein, B.K.8
Dodson, G.G.9
Wilson, J.C.10
Perutz, M.F.11
-
8
-
-
3543002606
-
Questions about RNA structures in HIV and HPV
-
Myers,G.L. (ed.), of Santa Fe Institute Studies in the Sciences of Complexity, Addison Wesley Longman, Reading, MA
-
Huynen,M. and Konings,D. (1998) Questions about RNA structures in HIV and HPV. In Myers,G.L. (ed.), Viral Regulatory Structures and Their Degeneracy, Vol. XXVIII of Santa Fe Institute Studies in the Sciences of Complexity, Addison Wesley Longman, Reading, MA, pp. 69-82.
-
(1998)
Viral Regulatory Structures and Their Degeneracy
, vol.28
, pp. 69-82
-
-
Huynen, M.1
Konings, D.2
-
9
-
-
0034308164
-
Protein structure comparison using the Markov transition model of evolution
-
Kawabata,T. and Nishikawa,K. (2000) Protein structure comparison using the Markov transition model of evolution. Protein Struct., 41, 108-122.
-
(2000)
Protein Struct.
, vol.41
, pp. 108-122
-
-
Kawabata, T.1
Nishikawa, K.2
-
10
-
-
0033650875
-
Finite-temperature sequence alignment
-
Kschischo,M. and Lassig,M. (2000) Finite-temperature sequence alignment. Pac. Symp. Biocomput., 1, 624-635.
-
(2000)
Pac. Symp. Biocomput.
, vol.1
, pp. 624-635
-
-
Kschischo, M.1
Lassig, M.2
-
11
-
-
0028015988
-
The protein threading problem with sequence amino acid interaction preferences is NP-complete
-
Lathrop,R.H. (1994) The protein threading problem with sequence amino acid interaction preferences is NP-complete. Protein Eng., 7, 1059-1068.
-
(1994)
Protein Eng.
, vol.7
, pp. 1059-1068
-
-
Lathrop, R.H.1
-
12
-
-
0003115798
-
A WWW service system for automatic comparison of protein structures
-
Lu,G. (1996) A WWW service system for automatic comparison of protein structures. Protein Data Bank Quarterly Newsletter, 78, 10-11.
-
(1996)
Protein Data Bank Quarterly Newsletter
, vol.78
, pp. 10-11
-
-
Lu, G.1
-
13
-
-
0034479757
-
A new method for protein structure comparisons and similarity searches
-
Lu,G. (2000) A new method for protein structure comparisons and similarity searches. J. Appl. Cryst., 33, 176-183.
-
(2000)
J. Appl. Cryst.
, vol.33
, pp. 176-183
-
-
Lu, G.1
-
14
-
-
0029595355
-
A reliable sequence alignment method based on probabilities of residue correspondences
-
Miyazawa,S. (1994) A reliable sequence alignment method based on probabilities of residue correspondences. Protein Eng., 8, 999-1009.
-
(1994)
Protein Eng.
, vol.8
, pp. 999-1009
-
-
Miyazawa, S.1
-
15
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman,S.B. and Wunsch,C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
16
-
-
0003157183
-
Noncoding RNA gene detection using comparative sequence analysis
-
Rivas,E. and Eddy,S.R. (2001) Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics, 2, pp. 19.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 19
-
-
Rivas, E.1
Eddy, S.R.2
-
17
-
-
0025317502
-
Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
-
Sali,A. and Blundell,T.L. (1990) Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. J. Mol. Biol., 212, 403-428.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 403-428
-
-
Sali, A.1
Blundell, T.L.2
-
18
-
-
0025913421
-
A simple method to generate non-trivial alternate alignments of protein sequences
-
Saqi,M.A. and Sternberg,M.J. (1991) A simple method to generate non-trivial alternate alignments of protein sequences. J. Mol. Biol., 219, 727-732.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 727-732
-
-
Saqi, M.A.1
Sternberg, M.J.2
-
19
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov,I. and Bourne,P. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.1
Bourne, P.2
-
20
-
-
0029995476
-
Near-optimal sequence alignment
-
Vingron,M. (1996) Near-optimal sequence alignment. Curr. Opin. Struct. Biol., 6, 346-352.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 346-352
-
-
Vingron, M.1
-
21
-
-
0025372332
-
Determination of reliable regions in protein sequence alignments
-
Vingron,M. and Argos,P. (1990) Determination of reliable regions in protein sequence alignments. Protein Eng., 3, 565-569.
-
(1990)
Protein Eng.
, vol.3
, pp. 565-569
-
-
Vingron, M.1
Argos, P.2
-
22
-
-
0034741155
-
Statistical significance of probabilistic sequence alignment and related local hidden Markov models
-
Yu,Y.K. and Hwa,T. (2001) Statistical significance of probabilistic sequence alignment and related local hidden Markov models. J. Comp. Biol., 8, 249-282.
-
(2001)
J. Comp. Biol.
, vol.8
, pp. 249-282
-
-
Yu, Y.K.1
Hwa, T.2
-
23
-
-
0031874740
-
Bayesian adaptive sequence alignment algorithms
-
Zhu,J., Liu,J.S. and Lawrence,C.E. (1998) Bayesian adaptive sequence alignment algorithms. Bioinformatics, 14, 25-39.
-
(1998)
Bioinformatics
, vol.14
, pp. 25-39
-
-
Zhu, J.1
Liu, J.S.2
Lawrence, C.E.3
|