-
1
-
-
0036896318
-
Perspective on the Xenopus field
-
Gurdon,J.B. (2002) Perspective on the Xenopus field. Dev. Dyn., 225, 379.
-
(2002)
Dev. Dyn.
, vol.225
, pp. 379
-
-
Gurdon, J.B.1
-
3
-
-
0004279072
-
-
Current Biology, London
-
Wolpert,L., Beddington,R., Brockes,J., Jessell,T., Lawrence,P. and Meyerowitz,E. (1998) Principles of Development. Current Biology, London.
-
(1998)
Principles of Development
-
-
Wolpert, L.1
Beddington, R.2
Brockes, J.3
Jessell, T.4
Lawrence, P.5
Meyerowitz, E.6
-
4
-
-
0031853867
-
Frog genetics: Xenopus tropicalis jumps into the future
-
Amaya,E., Offield,M.F. and Grainger,R.M. (1998) Frog genetics: Xenopus tropicalis jumps into the future. Trends Genet., 14, 253-255.
-
(1998)
Trends Genet
, vol.14
, pp. 253-255
-
-
Amaya, E.1
Offield, M.F.2
Grainger, R.M.3
-
5
-
-
0036895152
-
Xenopus, the next generation: X.tropicalis genetics and genomics
-
Hirsch,N., Zimmerman,L.B. and Grainger,R.M. (2002) Xenopus, the next generation: X.tropicalis genetics and genomics. Dev. Dyn., 225, 422-433.
-
(2002)
Dev. Dyn.
, vol.225
, pp. 422-433
-
-
Hirsch, N.1
Zimmerman, L.B.2
Grainger, R.M.3
-
6
-
-
0035425022
-
Microarray-based analysis of early development in Xenopus laevis
-
Altmann,C.R., Bell,E., Sczyrba,A., Pun,J., Bekiranov,S., Gaasterland,T. and Brivanlou,A.H. (2001) Microarray-based analysis of early development in Xenopus laevis. Dev. Biol., 236, 64-75.
-
(2001)
Dev. Biol.
, vol.236
, pp. 64-75
-
-
Altmann, C.R.1
Bell, E.2
Sczyrba, A.3
Pun, J.4
Bekiranov, S.5
Gaasterland, T.6
Brivanlou, A.H.7
-
7
-
-
0036920815
-
Gene profiling during neural induction in Xenopus laevis: Regulation of BMP signaling by post-transcriptional mechanisms and TAB3, a novel TAK1-binding protein
-
Munoz-Sanjuan,I., Bell,E., Altmann,C.R., Vonica,A. and Brivanlou,A.H. (2002) Gene profiling during neural induction in Xenopus laevis: regulation of BMP signaling by post-transcriptional mechanisms and TAB3, a novel TAK1-binding protein. Development, 129, 5529-5540.
-
(2002)
Development
, vol.129
, pp. 5529-5540
-
-
Munoz-Sanjuan, I.1
Bell, E.2
Altmann, C.R.3
Vonica, A.4
Brivanlou, A.H.5
-
8
-
-
14844306693
-
Microarray-based identification of VegT targets in Xenopus
-
Taverner,N.V., Kofron,M., Shin,Y., Kabitschke,C., Gilchrist,M.J., Wylie,C., Cho,K.W., Heasman,J. and Smith,J.C. (2005) Microarray-based identification of VegT targets in Xenopus. Mech. Dev., 122, 333-354.
-
(2005)
Mech. Dev.
, vol.122
, pp. 333-354
-
-
Taverner, N.V.1
Kofron, M.2
Shin, Y.3
Kabitschke, C.4
Gilchrist, M.J.5
Wylie, C.6
Cho, K.W.7
Heasman, J.8
Smith, J.C.9
-
9
-
-
20044378296
-
Global gene expression profiling and cluster analysis in Xenopus laevis
-
Baldessari,D., Shin,Y., Krebs,O., Konig,R., Koide,T., Vinayagam,A., Fenger,U., Mochii,M., Terasaka,C., Kitayama,A. et al. (2005) Global gene expression profiling and cluster analysis in Xenopus laevis. Mech. Dev., 122, 441-475.
-
(2005)
Mech. Dev.
, vol.122
, pp. 441-475
-
-
Baldessari, D.1
Shin, Y.2
Krebs, O.3
Konig, R.4
Koide, T.5
Vinayagam, A.6
Fenger, U.7
Mochii, M.8
Terasaka, C.9
Kitayama, A.10
-
10
-
-
14844326652
-
A Xenopus tropicalis oligonucleotide microarray works across species using RNA from Xenopus laevis
-
Chalmers,A.D., Goldstone,K., Smith,J.C., Gilchrist,M., Amaya,E. and Papalopulu,N. (2005) A Xenopus tropicalis oligonucleotide microarray works across species using RNA from Xenopus laevis. Mech. Dev., 122, 355-363.
-
(2005)
Mech. Dev.
, vol.122
, pp. 355-363
-
-
Chalmers, A.D.1
Goldstone, K.2
Smith, J.C.3
Gilchrist, M.4
Amaya, E.5
Papalopulu, N.6
-
11
-
-
3042540826
-
Defining a large set of full-length clones from a Xenopus tropicalis EST project
-
Gilchrist,M.J., Zorn,A.M., Voigt,J., Smith,J.C., Papalopulu,N. and Amaya,E. (2004) Defining a large set of full-length clones from a Xenopus tropicalis EST project. Dev. Biol., 271, 498-516.
-
(2004)
Dev. Biol.
, vol.271
, pp. 498-516
-
-
Gilchrist, M.J.1
Zorn, A.M.2
Voigt, J.3
Smith, J.C.4
Papalopulu, N.5
Amaya, E.6
-
12
-
-
0036896397
-
Techniques and probes for the study of Xenopus tropicalis development
-
Khokha,M.K., Chung,C., Bustamante,E.L., Gaw,L.W., Trott,K.A., Yeh,J., Lim,N., Lin,J.C., Taverner,N., Amaya,E. et al. (2002) Techniques and probes for the study of Xenopus tropicalis development. Dev. Dyn., 225, 499-510.
-
(2002)
Dev. Dyn.
, vol.225
, pp. 499-510
-
-
Khokha, M.K.1
Chung, C.2
Bustamante, E.L.3
Gaw, L.W.4
Trott, K.A.5
Yeh, J.6
Lim, N.7
Lin, J.C.8
Taverner, N.9
Amaya, E.10
-
14
-
-
0346059408
-
Expression of genes in the TGF-beta signaling pathway is significantly deregulated in smooth muscle cells from aorta of aryl hydrocarbon receptor knockout mice
-
Guo,J., Sartor,M., Karyala,S., Medvedovic,M., Kann,S., Puga,A., Ryan,P. and Tomlinson,C.R (2004) Expression of genes in the TGF-beta signaling pathway is significantly deregulated in smooth muscle cells from aorta of aryl hydrocarbon receptor knockout mice. Toxicol. Appl. Pharmacol., 194, 79-89.
-
(2004)
Toxicol. Appl. Pharmacol.
, vol.194
, pp. 79-89
-
-
Guo, J.1
Sartor, M.2
Karyala, S.3
Medvedovic, M.4
Kann, S.5
Puga, A.6
Ryan, P.7
Tomlinson, C.R.8
-
15
-
-
1942453913
-
Different global gene expression profiles in benzo[a]pyrene- and dioxin-treated vascular smooth muscle cells of AHR-knockout and wild-type mice
-
Karyala,S., Guo,J., Sartor,M., Medvedovic,M., Kann,S., Puga,A., Ryan,P. and Tomlinson,C.R. (2004) Different global gene expression profiles in benzo[a]pyrene- and dioxin-treated vascular smooth muscle cells of AHR-knockout and wild-type mice. Cardiovasc Toxicol., 4, 47-73.
-
(2004)
Cardiovasc Toxicol.
, vol.4
, pp. 47-73
-
-
Karyala, S.1
Guo, J.2
Sartor, M.3
Medvedovic, M.4
Kann, S.5
Puga, A.6
Ryan, P.7
Tomlinson, C.R.8
-
16
-
-
2442571046
-
Microarray results improve significantly as hybridization approaches equilibrium
-
Sartor,M., Schwanekamp,J., Halbleib,D., Mohamed, I., Karyala,S., Medvedovic,M. and Tomlinson,C.R. (2004) Microarray results improve significantly as hybridization approaches equilibrium. Biotechniques, 36, 790-796.
-
(2004)
Biotechniques
, vol.36
, pp. 790-796
-
-
Sartor, M.1
Schwanekamp, J.2
Halbleib, D.3
Mohamed, I.4
Karyala, S.5
Medvedovic, M.6
Tomlinson, C.R.7
-
17
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger,R.D., Gibson,G., Wolfinger,E.D., Bennett,L., Hamadeh,H., Bushel,P., Afshari,C. and Paules,R.S. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol., 8, 625-637.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
18
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Statist. Soc., B 57, 289-399.
-
(1995)
J. R. Statist. Soc.
, vol.57 B
, pp. 289-399
-
-
Benjamini, Y.1
Hochberg, Y.2
-
19
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
Reiner,A., Yekutieli,D. and Benjamini,Y. (2003) Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics, 19, 368-375.
-
(2003)
Bioinformatics
, vol.19
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
20
-
-
0036739286
-
Bayesian infinite mixture model based clustering of gene expression profiles
-
Medvedovic,M. and Sivaganesan,S. (2002) Bayesian infinite mixture model based clustering of gene expression profiles. Bioinformatics, 18, 1194-1206.
-
(2002)
Bioinformatics
, vol.18
, pp. 1194-1206
-
-
Medvedovic, M.1
Sivaganesan, S.2
-
21
-
-
3042686005
-
Bayesian mixture model based clustering of replicated microarray data
-
Medvedovic,M., Yeung,K.Y. and Bumgarner,R.E. (2004) Bayesian mixture model based clustering of replicated microarray data. Bioinformatics, 20, 1222-1232.
-
(2004)
Bioinformatics
, vol.20
, pp. 1222-1232
-
-
Medvedovic, M.1
Yeung, K.Y.2
Bumgarner, R.E.3
-
22
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B., Spellman,P.T., Brown,P.O. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
23
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin,S. and Altschul,S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
24
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack,D.A., Dennis,G.Jr, Sherman,B.T., Lane,H.C. and Lempicki,R.A. (2003) Identifying biological themes within lists of genes with EASE. Genome. Biol., 4, R70.
-
(2003)
Genome. Biol.
, vol.4
-
-
Hosack, D.A.1
Dennis Jr., G.2
Sherman, B.T.3
Lane, H.C.4
Lempicki, R.A.5
-
25
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nature Genet., 25, 25-29.
-
(2000)
Nature Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
27
-
-
19344372220
-
A neutral model of transcriptome volution
-
Khaitovich,P., Weiss,G., Lachmann,M., Hellmann,I., Enard,W., Muetzel,B., Wirkner,U., Ansorge,W. and Paabo,S. (2004) A neutral model of transcriptome volution. PLoS Biol., 2, E132.
-
(2004)
PLoS Biol.
, vol.2
-
-
Khaitovich, P.1
Weiss, G.2
Lachmann, M.3
Hellmann, I.4
Enard, W.5
Muetzel, B.6
Wirkner, U.7
Ansorge, W.8
Paabo, S.9
-
28
-
-
0017617781
-
Albumin phylogeny for clawed frogs (Xenopus)
-
Bisbee,C.A., Baker,M.A., Wilson,A.C., Haji-Azimi,I. and Fischberg,M. (1977) Albumin phylogeny for clawed frogs (Xenopus). Science, 195, 785-787.
-
(1977)
Science
, vol.195
, pp. 785-787
-
-
Bisbee, C.A.1
Baker, M.A.2
Wilson, A.C.3
Haji-Azimi, I.4
Fischberg, M.5
-
29
-
-
0027423610
-
Evolution of duplicate genes in a tetraploid animal, Xenopus laevis
-
Hughes,M.K. and Hughes,A.L. (1993) Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol. Biol. Evol., 10, 1360-1369.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1360-1369
-
-
Hughes, M.K.1
Hughes, A.L.2
-
30
-
-
0036845822
-
Splitting pairs: The diverging fates of duplicated genes
-
Prince,V.E. and Pickett,F.B. (2002) Splitting pairs: The diverging fates of duplicated genes. Nature Rev. Genet., 3, 827-837.
-
(2002)
Nature Rev. Genet.
, vol.3
, pp. 827-837
-
-
Prince, V.E.1
Pickett, F.B.2
-
31
-
-
19844365733
-
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
-
Gilad,Y., Rifkin,S.A., Bertone,P., Gerstein,M. and White,K.P. (2005) Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome. Res., 15, 674-680.
-
(2005)
Genome. Res.
, vol.15
, pp. 674-680
-
-
Gilad, Y.1
Rifkin, S.A.2
Bertone, P.3
Gerstein, M.4
White, K.P.5
-
32
-
-
0037504137
-
Sex-dependent gene expression and evolution of the Drosophila transcriptome
-
Ranz,J.M., Castillo-Davis,C.I., Meiklejohn,C.D. and Hartl,D.L. (2003) Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science, 300, 1742-1745.
-
(2003)
Science
, vol.300
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
33
-
-
25444486428
-
In vitroidentification and in silico utilization of interspecies sequence similarities using GeneChip technology
-
Grigoryev,D.N., Ma,S.F., Simon,B.A., Irizarry,R.A., Ye,S.Q. and Garcia,J.G. (2005) In vitroidentification and in silico utilization of interspecies sequence similarities using GeneChip technology. BMC Genomics, 6, 62.
-
(2005)
BMC Genomics
, vol.6
, pp. 62
-
-
Grigoryev, D.N.1
Ma, S.F.2
Simon, B.A.3
Irizarry, R.A.4
Ye, S.Q.5
Garcia, J.G.6
-
34
-
-
9444221338
-
Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays
-
Adjaye,J., Herwig,R., Herrmann,D., Wruck,W., Benkahla,A., Brink,T.C., Nowak,M., Carnwath,J.W., Hultschig,C., Niemann,H. et al. (2004) Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays. BMC Genomics, 5, 83.
-
(2004)
BMC Genomics
, vol.5
, pp. 83
-
-
Adjaye, J.1
Herwig, R.2
Herrmann, D.3
Wruck, W.4
Benkahla, A.5
Brink, T.C.6
Nowak, M.7
Carnwath, J.W.8
Hultschig, C.9
Niemann, H.10
-
35
-
-
4544237063
-
Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform - Preliminary results
-
Shah,G., Azizian,M., Bruch,D., Mehta,R. and Kittur,D. (2004) Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform - preliminary results. Clin. Transplant, 18 (Suppl 12), 76-80.
-
(2004)
Clin. Transplant
, vol.18
, Issue.SUPPL. 12
, pp. 76-80
-
-
Shah, G.1
Azizian, M.2
Bruch, D.3
Mehta, R.4
Kittur, D.5
-
36
-
-
13244267052
-
Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip platforms for the optimization of the assessment of expression patterns, in non-human primate (NHP) samples
-
Wang,Z., Lewis,M.G., Nau,M.E., Arnold,A. and Vahey,M.T. (2004) Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip platforms for the optimization of the assessment of expression patterns, in non-human primate (NHP) samples. BMC Bioinformatics, 5, 165.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 165
-
-
Wang, Z.1
Lewis, M.G.2
Nau, M.E.3
Arnold, A.4
Vahey, M.T.5
|