The element(s) at the nontranscribed Xist locus of the active X chromosome controls chromosomal replication timing in the mouse

Genetics

Volumn 171, Issue 2, 2005, Pages 663-672

  Diaz Perez, Silvia ^a   Ouyang, Yan ^a   Perez, Vanessa ^a   Cisneros, Roxanna ^a   Regelson, Moira ^a   Marahrens, York ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CELL CYCLE S PHASE; CHROMOSOME REPLICATION; CONTROLLED STUDY; FEMALE; GENE LOCUS; GENE REPLICATION; GENE REPRESSION; MAMMAL CELL; MOUSE; NONHUMAN; PRIORITY JOURNAL; X CHROMOSOME;

ANIMALS; BROMODEOXYURIDINE; DNA PRIMERS; DNA REPLICATION TIMING; GENE DELETION; IN SITU HYBRIDIZATION, FLUORESCENCE; MICE; RNA, UNTRANSLATED; X CHROMOSOME; X CHROMOSOME INACTIVATION;

ANIMALIA; MAMMALIA;

EID: 31544481848     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.043026     Document Type: Article

References (39)

1. BAILEY, J. A., L. CARREL, A. CHAKRAVARTI and E. E. EICHLER, 2000 Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. Proc. Natl. Acad. Sci. USA 97: 6634-6639.
2. BROCKDORFF, N., A. ASHWORTH, G. F. KAY, P. COOPER, S. SMITH et al., 1991 Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome. Nature 351: 329-331.
3. BROWN, C. J., A. BALLABIO, J. L. RUPERT, R. G. LAFRENIERE, M. GROMPE et al., 1991 A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature 349: 38-44.
4. BROWN, C. J., B. D. HENDRICH, J. L. RUPERT, R. G. LAFRENIERE, Y. XING et al., 1992 The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus. Cell 71: 527-542.
5. CIMBORA, D. M., D. SCHUBELER, A. REIK, J. HAMILTON, C. FRANCASTEL et al., 2000 Long distance control of origin choice and replication timing in the human b-globin locus are independent of the locus control region. Mol. Cell. Biol. 20: 5581-5591.
6. CLEMSON, C. M., J. A. MCNEIL, H. F. WILLARD and J. B. LAWRENCE, 1996 XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure. J. Cell Biol. 132: 259-275.
7. COHEN, S. M., B. P. BRYLAWSKI, M. CORDEIRO-STONE and D. G. KAUFMAN, 2003 Same origins of DNA replication function on the active and inactive human X chromosomes. J. Cell. Biochem. 88: 923-931.
8. CSANKOVSZKI, G., B. PANNING, B. BATES, J. R. PEHRSON and R. JAENISCH, 1999 Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation. Nat. Genet. 22: 323-324.
9. CSANKOVSZKI, G., A. NAGY and R. JAENISCH, 2001 Synergism of Xist RNA, DNA methylation, and histone hypoacetylation in maintaining X chromosome inactivation. J. Cell Biol. 153: 773-784.
10. ENSMINGER, A. W., and A. CHESS, 2004 Coordinated replication timing of monoallelically expressed genes along human autosomes. Hum. Mol. Genet. 13: 651-658.
11. EVANS, H. J., C. E. FORD, M. F. LYON and J. GRAY, 1965 DNA replication and genetic expression in female mice with morphologically distinguishable X chromosomes. Nature 206: 900-903.
12. FORRESTER, W. C., E. EPNER, M.C. DRISCOLL, T. ENVER, M. BRICE et al., 1990 A deletion of the human b-globin locus activation region causes a major alteration in chromatin structure and replication across the entire b-globin locus. Genes Dev. 4: 1637-1649.
13. GALTON, M., and S. F. HOLT, 1965 Asynchronous replication of the mouse sex chromosomes. Exp. Cell Res. 37: 111-116.
14. GARTLER, S. M., and A. D. RIGGS, 1983 Mammalian X-chromosome inactivation. Annu. Rev. Genet. 17: 155-190.
15. GILBERT, D. M., 2002 Replication timing and transcriptional control: beyond cause and effect. Curr. Opin. Cell Biol. 14: 377-383.
16. GOMEZ, M., and N. BROCKDORFF, 2004 Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage. Proc. Natl. Acad. Sci. USA 101: 6923-6928.
17. HADJANTONAKIS, A. K., M. GERTSENSTEIN, M. IKAWA, M. OKABE and A. NAGY, 1998 Non-invasive sexing of pre-implantation mammalian embryos. Nat. Genet. 19: 220-222.
18. HANSEN, R. S., 2003 X inactivation-specific methylation of LINE-1 elements by DNMT3B: implications for the Lyon repeat hypothesis. Hum. Mol. Genet. 12: 2559-2567.
19. HANSEN, R. S., T. K. CANFIELD, A. D. FJELD, S. MUMM, C. D. LAIRD et al., 1997 A variable domain of delayed replication in FRAXA fragile X chromosomes: X inactivation-like spread of late replication. Proc. Natl. Acad. Sci. USA 94: 4587-4592.
20. HUBERMAN, J. A., and A. D. RIGGS, 1968 On the mechanism of DNA replication in mammalian chromosomes. J. Mol. Biol. 32: 327-341.
21. IHAKA, R., and R. GENTLEMAN, 1996 R: a language for data analysis and graphics. J. Comput. Graph. Stat. 5: 299-314.
22. JAT, P. S., C. L. CEPKO, R. C. MULLIGAN and P. A. SHARP, 1986 Recombinant retroviruses encoding simian virus 40 large T antigen and polyomavirus large and middle T antigens. Mol. Cell. Biol. 6: 1204-1217.
23. KRUSKAL, J. B., 1964 Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29: 1-27.
24. LANDER, E. S., L. M. LINTON, B. BIRREN, C. NUSBAUM, M. C. ZODY et al., 2001 Initial sequencing and analysis of the human genome. Nature 409: 860-921.
25. LYON, M. F., 1998 X-chromosome inactivation: a repeat hypothesis. Cytogenet. Cell Genet. 80: 133-137.
26. MARAHRENS, Y., 1999 X-inactivation by chromosomal pairing events. Genes Dev. 13: 2624-2632.
27. MARAHRENS, Y., B. PANNING, J. DAUSMAN, W. STRAUSS and R. JAENISCH, 1997 Xist-deficient mice are defective in dosage compensation but not spermatogenesis. Genes Dev. 11: 156-166.
28. MARAHRENS, Y., J. LORING and R. JAENISCH, 1998 Role of the Xist gene in X chromosome choosing. Cell 92: 657-664.
29. NESBITT, M. N., and S. M. GARTLER, 1970 Replication of the mouse sex chromosomes early in the S period. Cytogenetics 9: 212-221.
30. PENNY, G. D., G. F. KAY, S. A. SHEARDOWN, S. RASTAN and N. BROCKDORFF, 1996 Requirement for Xist in X chromosome inactivation. Nature 379: 131-137.
31. PRIEST, J. H., J. E. HEADY and R. E. PRIEST, 1967 Delayed onset of replication of human X chromosomes. J. Cell Biol. 35: 483-487.
32. SINGH, N., F. A. EBRAHIMI, A. A. GIMELBRANT, A. W. ENSMINGER, M.R. TACKETT et al., 2003 Coordination of the random asynchronous replication of autosomal loci. Nat. Genet. 33: 339-341.
33. SPECTOR, D., and R. GOLDMAN, 1998 In situ hybridization to RNA, pp. 114-117 in Cells: A Laboratory Manual, Vol. 2, edited by D. SPECTOR and R. GOLDMAN. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
34. TAN, B. T., L. WU and A. J. BERK, 1999 An adenovirus-Epstein-Barr virus hybrid vector that stably transforms cultured cells with high efficiency. J. Virol. 73: 7582-7589.
35. TAYLOR, J. H., 1968 Rates of chain growth and units of replication in DNA of mammalian chromosomes. J. Mol. Biol. 31: 579-594.
36. TAYLOR, J. H., and P. MINER, 1968 Units of DNA replication in mammalian chromosomes. Cancer Res. 9: 1810-1814.
37. TIEPOLO, L., M. FRACCARO, M. HULTEN, J. LINDSTEN, A. MANNINI et al., 1967 Timing of sex chromosome replication in somatic and germ-line cells of the mouse and the rat. Cytogenetics 6: 51-66.
38. TODOROVIC, V., A. FALASCHI and M. GIACCA, 1999 Replication origins of mammalian chromosomes: the happy few. Front. Biosci. 4: D859-D868.
39. WATERSTON, R. H., K. LINDBLAD-TOH, E. BIRNEY, J. ROGERS, J. F. ABRIL et al., 2002 Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.