Crystal structure of orphan protein (TM0875) from Thermotoga maritima at 2.00-Å resolution reveals a new fold

Proteins: Structure, Function and Genetics

Volumn 56, Issue 3, 2004, Pages 607-610

  Bakolitsa, Constantina ^a   Schwarzenbacher, Robert ^b,c   McMullan, Daniel ^b,d   Brinen, Liada S ^b,e   Canaves, Jaume M ^b,c   Dai, Xiaoping ^b,f   Deacon, Ashley M ^b,e   Elsliger, Marc André ^b,f   Eshagi, Said ^a,b,d   Floyd, Ross ^a,b,e   Godzik, Adam ^b,c   Grittini, Carina ^b,f   Grzechnik, Slawomir K ^b,c   Jaroszewski, Lukasz ^b,c   Karlak, Cathy ^a,b,d   Klock, Heath E ^a,b,d   Koesema, Eric ^b,d   Kovarik, John S ^b,e   Kreusch, Andreas ^b,d   Kuhn, Peter ^b,f   Lesley, Scott A ^b,d   McPhillips, Timothy M ^b,e   Miller, Mitchell D ^b,e   Morse, Andrew ^b,c   Moy, Kin ^b,f   Ouyang, Jie ^b,d   Page, Rebecca ^b,f   Quijano, Kevin ^b,d   Robb, Alyssa ^b,d   Spraggon, Glen ^b,d   Stevens, Raymond C ^b,f   Van Den Bedem, Henry ^b,e   Velasquez, Jeff ^b,f   Vincent, Juli ^b,d   Von Delft, Frank ^b,f   Wang, Xianhong ^b,c   West, Bill ^b,c   Wolf, Guenter ^a,b   Hodgson, Keith O ^b,e   Wooley, John ^b,c,g   Wilson, Ian A ^b,f   more..

^a BURNHAM INSTITUTE   (United States)

^b Joint Center for Structural Genomics   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

^e SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^f SCRIPPS RESEARCH INSTITUTE   (United States)

^g UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PROTEIN TM0875; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; BETA SHEET; CRYSTAL STRUCTURE; ISOELECTRIC POINT; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; SEQUENCE HOMOLOGY; THERMOTOGA MARITIMA;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MULTIPROTEIN COMPLEXES; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY; STRUCTURAL HOMOLOGY, PROTEIN; THERMOTOGA MARITIMA;

BACTERIA (MICROORGANISMS); THERMOTOGA; THERMOTOGA MARITIMA;

EID: 3142765952     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20138     Document Type: Article

References (15)

1. Nelson KE, Clayton RA, Gill SR, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Nelson WC, Ketchum KA, McDonald L, Utterback TR, Malek JA, Linher KD, Garrett MM, Stewart AM, Cotton MD, Pratt MS, Phillips CA, Richardson D, Heidelberg J, Sutton GG, Fleischmann RD, Eisen JA, Fraser CM. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 1999;399:323-329.
2. Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Wooley J, Taylor SS, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci USA. 2002;99:11664-11669.
3. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PRO-CHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 1993;26:283-291.
4. Jones S, Thornton JM. Principles of protein-protein interactions derived from structural studies. Proc Natl Acad Sci USA 1996;93: 13-20.
5. Holm L, Sander C. Dali: a network tool for protein structure comparison. Trends Biochem Sci 1995;20:478-480.
6. Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci 2002;11:1702-1713.
7. Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJA, Vaughan R, Zdobnov E. The InterPro Database, 2003 brings increased coverage and new features. Nucl Acids Res 2003;31:315-318.
8. Santarsiero, BD, Yegian DT, Lee CC, Spraggon G, Gu J, Scheibe D, Uber DC, Cornell EW, Nordmeyer RA, Kolbe WF, Jin J, Jones AL, Jaklevic JM, Schultz PG, Stevens RC. An approach to rapid protein crystallization using nanodroplets. J Appl Crystallogr 2002;35:278-281.
9. McPhilIips TM, McPhillips SE, Chiu HJ, Cohen AE, Deacon AM, Ellis PJ, Garman E, Gonzalez A, Sauter NK, Phizackerley RP, Soltis SM, Kuhn P. Blu-ice and the distributed control system: software for data acquisition and instrument control at macromolecular crystallography beamlines. J Synchrotron Radiat 2002;9: 401-406.
10. Leslie AGW. Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography 1992;26.
11. Collaborative Computational Project Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr 1994;D50: 760-763.
12. Terwilliger TC, Berendzen J. Automated structure solution for MIR and MAD. Acta Crystallogr 1999;D55:849-861.
13. Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang J-S, Kuszewski J, Nilges N, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography and NMR system (CNS): A new software system for macromolecular structure determination. Acta Crystallogr 1998;D54:905-921.
14. McRee, DE. XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density. J Struct Biol 1999;125: 156-165.
15. Tickle IJ, Laskowski RA, Moss DS. Error estimates of protein structure coordinates and deviations from standard geometry by full-matrix refinement of gammaB- and betaB2- crystallin. Acta Crystallogr 1998;D54:243-252.