Quantitative analysis of diverse Lactobacillus species present in advanced dental caries

Journal of Clinical Microbiology

Volumn 42, Issue 7, 2004, Pages 3128-3136

  Byun, Roy ^a   Nadkarni, Mangala A ^a   Chhour, Kim Ly ^a   Martin, F Elizabeth ^a   Jacques, Nicholas A ^a   Hunter, Neil ^a  

^a Westmead Centre for Oral Health   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOXYLIC ACID; DNA 16S; PRIMER DNA;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL COUNT; BACTERIAL VIRULENCE; BACTERIUM CULTURE; BACTERIUM EXAMINATION; DENTAL CARIES; DENTIN; GENUS; INTESTINE FLORA; LACTOBACILLUS; LACTOBACILLUS CASEI; LACTOBACILLUS CRISPATUS; LACTOBACILLUS DELBRUECKII; LACTOBACILLUS FERMENTUM; LACTOBACILLUS GALLINARUM; LACTOBACILLUS GASSERI; LACTOBACILLUS RHAMNOSUS; LACTOBACILLUS SALIVARIUS; LACTOBACILLUS ULTUNENSIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLOTYPE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SPECIES DIVERSITY;

COLONY COUNT, MICROBIAL; DENTAL CARIES; DNA PRIMERS; DNA, BACTERIAL; HUMANS; LACTOBACILLUS; POLYMERASE CHAIN REACTION; PULPITIS;

BACTERIA (MICROORGANISMS); LACTOBACILLUS; LACTOBACILLUS CASEI; LACTOBACILLUS CRISPATUS; LACTOBACILLUS DELBRUECKII; LACTOBACILLUS FERMENTUM; LACTOBACILLUS GALLINARUM; LACTOBACILLUS GASSERI; LACTOBACILLUS RHAMNOSUS; LACTOBACILLUS SALIVARIUS; LACTOBACILLUS ULTUNENSIS; POSIBACTERIA;

EID: 3142757134     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.7.3128-3136.2004     Document Type: Article

References (38)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Ando, N., and E. Hoshino. 1990. Predominant obligate anaerobes invading the deep layers of root canal dentin. Int. Endodont. J. 23:20-27.
3. Bjorndal, L., and T. Larsen. 2000. Changes in the cultivable flora in deep carious lesions following a stepwise excavation procedure. Caries Res. 34:502-508.
4. Botha, S. J., S. C. Boy, F. S. Botha, and R. Senekal. 1998. Lactobacillus species associated with active caries lesions. J. Dent. Assoc. S. Afr. 53:3-6.
5. Brown, L. R., R. J. Billings, and A. G. Kaster. 1986. Quantitative comparisons of potentially cariogenic microorganisms cultured from noncarious and carious root and coronal tooth surfaces. Infect. Immun. 51:765-770.
6. Cole, J. R., B. Chai, T. L. Marsh, R. J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, T. M. Schmidt, G. M. Garrity, and J. M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31:442-443.
7. Edwards, C., M. Collins, P. Lawson, and A. Rodriguez. 2000. Lactobacillus nagelii sp. nov., an organism isolated from a partially fermented wine. Int. J. Syst. Evol. Microbiol. 50:699-702.
8. Fujisawa, T., Y. Benno, T. Yaeshima, and T. Mitsuoka. 1992. Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). Int. J. Syst. Bacteriol. 42:487-491.
9. Hahn, C. L., W. A. Falkler, Jr., and G. E. Minah. 1991. Microbiological studies of carious dentine from human teeth with irreversible pulpitis. Arch. Oral Biol. 36:147-153.
10. Helderman, W. H. V., M. I. N. Matee, J. S. vanderHoeven, and F. H. M. Mikx. 1996. Cariogenicity depends more on diet than the prevailing mutans streptococcal species. J. Dent. Res. 75:535-545.
11. Hoshino, E. 1985. Predominant obligate anaerobes in human carious dentin. J. Dent. Res. 64:1195-1198.
12. Hoshino, E., N. Ando, M. Sato, and K. Kota. 1992. Bacterial invasion of non-exposed dental pulp. Int. Endodont. J. 25:2-5.
13. Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:4765-4774.
14. Johnson, J. L., C. F. Phelps, C. S. Cummins, J. London, and F. Gasser. 1980. Taxonomy of the Lactobacillus acidophilus group. Int. J. Syst. Bacteriol. 30:53-68.
15. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, New York, N.Y.
16. Klaenhammer, T., E. Altermann, F. Arigoni, A. Bolotin, F. Breidt, J. Broadbent, R. Cano, S. Chaillou, J. Deutscher, M. Gasson, M. van de Guchte, J. Guzzo, A. Hartke, T. Hawkins, P. Hols, R. Hutkins, M. Kleerebezem, J. Kok, O. Kuipers, M. Lubbers, E. Maguin, L. McKay, D. Mills, A. Nauta, R. Overbeek, H. Pel, D. Pridmore, M. Saier, D. van Sinderen, A. Sorokin, J. Steele, D. O'Sullivan, W. de Vos, B. Weimer, M. Zagorec, and R. Siezen. 2002. Discovering lactic acid bacteria by genomics. Antonie van Leeuwenhoek 82:29-58.
17. Krooneman, J., F. Faber, A. C. Alderkamp, S. Oude Elferink, F. Driehuis, I. Cleenwerck, J. Swings, J. C. Gottschal, and M. Vancanneyt. 2002. Lactobacillas diolivorans sp. nov., a 1,2-propanediol-degrading bacterium isolated from aerobically stable maize silage. Int. J. Syst. Evol. Microbiol. 52:639-646.
18. Leser, T. D., J. Z. Amenuvor, T. K. Jensen, R. H. Lindecrona, M. Boye, and K. Moller. 2002. Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl. Environ. Microbiol. 68:673-690.
19. Love, R. M., and H. F. Jenkinson. 2002. Invasion of dentinal tubules by oral bacteria. Crit. Rev. Oral Biol. Med. 13:171-183.
20. Love, R. M., M. D. McMillan, Y. Park, and H. F. Jenkinson. 2000. Coinvasion of dentinal tubules by Porphyromonas gingivalis and Streptococcus gordonii depends upon binding specificity of streptococcal antigen I/II adhesin. Infect. Immun. 68:1359-1365.
21. Marchant, S., S. R. Brailsford, A. C. Twomey, G. J. Roberts, and D. Beighton. 2001. The predominant microflora of nursing caries lesions. Caries Res. 35:397-406.
22. Martin, F. E., M. A. Nadkarni, N. A. Jacques, and N. Hunter. 2002. Quantitative microbiological study of human carious dentine by culture and real-time PCR: association of anaerobes with histopathological changes in chronic pulpitis. J. Clin. Microbiol. 40:1698-1704.
23. Massey, W. L., D. M. Romberg, N. Hunter, and W. R. Hume. 1993. The association of carious dentin microflora with tissue changes in human pulpitis. Oral Microbiol. Immunol. 8:30-35.
24. McGrady, J. A., W. G. Butcher, D. Beighton, and L. M. Switalski. 1995. Specific and charge interactions mediate collagen recognition by oral lactobacilli. J. Dent. Res. 74:649-657.
25. McOrist, A. L., M. Jackson, and A. R. Bird. 2002. A comparison of five methods for extraction of bacterial DNA from human faecal samples. J. Microbiol. Methods 50:131-139.
26. Nadkarni, M. A., F. E. Martin, N. A. Jacques, and N. Hunter. 2002. Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148:257-266.
27. Nagaoka, S., Y. Miyazaki, H. J. Liu, Y. Iwamoto, M. Kitano, and M. Kawagoe. 1995. Bacterial invasion into dentinal tubules of human vital and non-vital teeth. J. Endodont. 21:70-73.
28. Neefs, J. M., Y. Van de Peer, P. De Rijk, S. Chapelle, and R. De Wachter. 1993. Compilation of small ribosomal subunit RNA structures. Nucleic Acids Res. 21:3025-3049.
29. Paster, B. J., S. K. Boches, J. L. Galvin, R. E. Ericson, C. N. Lau, V. A. Levanos, A. Sahasrabudhe, and F. E. Dewhirst. 2001. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183:3770-3783.
30. Roos, S., F. Karner, L. Axelsson, and H. Jonsson. 2000. Lactobacillus mucosae sp nov, a new species with in vitro mucus-binding activity isolated from pig intestine. Int. J. Syst. Evol. Microbiol. 50:251-258.
31. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
32. Shovlin, F. E., and R. E. Gillis. 1968. Biochemical and antigenic studies of lactobacilli isolated from deep dentinal caries. I. Biochemical aspects. J. Dent. Res. 48:356-360.
33. Smith, S. I., A. J. Aweh, A. O. Coker, K. O. Savage, D. A. Abosede, and K. S. Oyedeji. 2001. Lactobacilli in human dental caries and saliva. Microbios 105:77-85.
34. Staat, R. H., T. H. Gawronski, D. E. Cressey, R. S. Harris, and L. E. Folke. 1975. Effects of dietary sucrose levels on the quantity and microbial composition of human dental plaque. J. Dent. Res. 54:872-880.
35. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
36. van Strijp, A. J., T. J. van Steenbergen, and J. M. ten Cate. 1997. Bacterial colonization of mineralized and completely demineralized dentine in situ. Caries Res. 31:349-355.
37. Vogel, R. F., G. Bocker, P. Stolz, M. Ehrmann, D. Fanta, W. Ludwig, B. Pot, K. Kersters, K. H. Schleifer, and W. P. Hammes. 1994. Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. Int. J. Syst. Bacteriol. 44:223-229.
38. von Wintzingerode, F., U. B. Gobel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.