-
1
-
-
18444382346
-
Distribution of genes for the synthesis of trehalose and mannosylglycerate in Thermus spp. and direct correlation with halotolerance
-
Alarico, S., N. Empadinhas, C. Simōes, Z. Silva, A. Henne, A. Mingote, H. Santos, and M. S. da Costa. 2005. Distribution of genes for the synthesis of trehalose and mannosylglycerate in Thermus spp. and direct correlation with halotolerance. Appl. Environ. Microbiol. 71:2460-2466.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2460-2466
-
-
Alarico, S.1
Empadinhas, N.2
Simoes, C.3
Silva, Z.4
Henne, A.5
Mingote, A.6
Santos, H.7
Da Costa, M.S.8
-
2
-
-
0343879238
-
Assay of inorganic phosphate, total phosphate and phosphatases
-
Ames, B. N. 1966. Assay of inorganic phosphate, total phosphate and phosphatases. Methods Enzymol. 8:115-118.
-
(1966)
Methods Enzymol.
, vol.8
, pp. 115-118
-
-
Ames, B.N.1
-
3
-
-
0024084857
-
Divergent promoters, a common form of gene organization
-
Beck, C. F., and R. A. J. Warren. 1988. Divergent promoters, a common form of gene organization. Microbiol. Rev. 52:318-326.
-
(1988)
Microbiol. Rev.
, vol.52
, pp. 318-326
-
-
Beck, C.F.1
Warren, R.A.J.2
-
4
-
-
1642279326
-
Specialized roles of the two pathways for the synthesis of mannosylglycerate in osmoadaptation and thermoadaptation of Rhodothermus marinus
-
Borges, N., J. D. Marugg, N. Empadinhas, M. S. da Costa, and H. Santos. 2004. Specialized roles of the two pathways for the synthesis of mannosylglycerate in osmoadaptation and thermoadaptation of Rhodothermus marinus. J. Biol. Chem. 279:9892-9898.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 9892-9898
-
-
Borges, N.1
Marugg, J.D.2
Empadinhas, N.3
Da Costa, M.S.4
Santos, H.5
-
5
-
-
0017184389
-
A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. 1976. A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
6
-
-
0017031867
-
Microbial water stress
-
Brown, A. D. 1976. Microbial water stress. Bacteriol. Rev. 40:803-846.
-
(1976)
Bacteriol. Rev.
, vol.40
, pp. 803-846
-
-
Brown, A.D.1
-
7
-
-
0032586949
-
Role of N-γ-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine
-
Cánovas, D., N. Borges, C. Vargas, A, Ventosa, J. Nieto, and H. Santos. 1999. Role of N-γ-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine. Appl. Environ. Microbiol. 65:3774-3779.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3774-3779
-
-
Cánovas, D.1
Borges, N.2
Vargas, C.3
Ventosa, A.4
Nieto, J.5
Santos, H.6
-
8
-
-
0037466315
-
An evolving hierarchical family classification for glycosyltransferases
-
Coutinho, P. M., E. Deleury, G. J. Davies, and B. Henrissat. 2003. An evolving hierarchical family classification for glycosyltransferases. J. Mol. Biol. 328:307-317.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 307-317
-
-
Coutinho, P.M.1
Deleury, E.2
Davies, G.J.3
Henrissat, B.4
-
9
-
-
0032440388
-
Sucrose-phosphate synthase from Synechocystis sp. strain PCC6803: Identification of the spsA gene and characterization of the enzyme expressed in Escherichia coli
-
Curatti, L., E. Folco, P. Desplats, G. Abratti, V. Limones, L. Herrera-Estrella, and G. Salerno. 1998. Sucrose-phosphate synthase from Synechocystis sp. strain PCC6803: identification of the spsA gene and characterization of the enzyme expressed in Escherichia coli. J. Bacteriol. 180:6776-6779.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6776-6779
-
-
Curatti, L.1
Folco, E.2
Desplats, P.3
Abratti, G.4
Limones, V.5
Herrera-Estrella, L.6
Salerno, G.7
-
10
-
-
0031613817
-
An overview of the role and diversity of compatible solutes in Bacteria and Archaea
-
da Costa, M. S., H. Santos, and E. A. Galinski. 1998. An overview of the role and diversity of compatible solutes in Bacteria and Archaea. Adv. Biochem. Eng. Biotechnol. 61:117-153.
-
(1998)
Adv. Biochem. Eng. Biotechnol.
, vol.61
, pp. 117-153
-
-
Da Costa, M.S.1
Santos, H.2
Galinski, E.A.3
-
11
-
-
0029645404
-
Structures and mechanisms of glycosyl hydrolases
-
Davies, G., and B. Henrissat. 1995. Structures and mechanisms of glycosyl hydrolases. Structure 3:835-859.
-
(1995)
Structure
, vol.3
, pp. 835-859
-
-
Davies, G.1
Henrissat, B.2
-
12
-
-
0035941355
-
Pathway for the synthesis of mannosylglycerate in the hyperthermophilic archaeon Pyrococcus horikoshii. Biochemical and genetic characterization of key enzymes
-
Empadinhas, N., J. D. Marugg, N. Borges, H. Santos, and M. S. da Costa. 2001. Pathway for the synthesis of mannosylglycerate in the hyperthermophilic archaeon Pyrococcus horikoshii. Biochemical and genetic characterization of key enzymes. J. Biol. Chem. 276:43580-43588.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 43580-43588
-
-
Empadinhas, N.1
Marugg, J.D.2
Borges, N.3
Santos, H.4
Da Costa, M.S.5
-
13
-
-
0038655499
-
The bacterium Thermus thermophilus, like hyperthermophilic archaea, uses a two-step pathway for the synthesis of mannosylglycerate
-
Empadinhas, N., L. Albuquerque, A. Henne, H. Santos, and M. S. da Costa. 2003. The bacterium Thermus thermophilus, like hyperthermophilic archaea, uses a two-step pathway for the synthesis of mannosylglycerate. Appl. Environ. Microbiol. 69:3272-3279.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3272-3279
-
-
Empadinhas, N.1
Albuquerque, L.2
Henne, A.3
Santos, H.4
Da Costa, M.S.5
-
14
-
-
3042523198
-
A gene from the mesophilic bacterium Dehalococcoides ethenogenes encodes a novel mannosylglycerate synthase
-
Empadinhas, N., L. Albuquerque, J. Costa, S. H. Zinder, M. A. S. Santos, H. Santos, and M. S. da Costa. 2004. A gene from the mesophilic bacterium Dehalococcoides ethenogenes encodes a novel mannosylglycerate synthase. J. Bacteriol. 186:4075-4084.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4075-4084
-
-
Empadinhas, N.1
Albuquerque, L.2
Costa, J.3
Zinder, S.H.4
Santos, M.A.S.5
Santos, H.6
Da Costa, M.S.7
-
15
-
-
22144432266
-
Structural dissection and high-throughput screening of mannosylglycerate synthase
-
Flint, J., E. Taylor, M. Yang, D. N. Bolam, L. E. Tailford, C. Martinez-Fleites, E. J. Dodson, B. G. Davis, H. J. Gilbert, and G. J. Davies. 2005. Structural dissection and high-throughput screening of mannosylglycerate synthase. Nat. Struct. Mol. Biol. 12:608-614.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 608-614
-
-
Flint, J.1
Taylor, E.2
Yang, M.3
Bolam, D.N.4
Tailford, L.E.5
Martinez-Fleites, C.6
Dodson, E.J.7
Davis, B.G.8
Gilbert, H.J.9
Davies, G.J.10
-
16
-
-
0025356674
-
The role of trehalose as a substitute for nitrogen-containing compatible solutes (Ectothiorhodospira halochloris)
-
Galinski, E. A., and R. Herzog. 1990. The role of trehalose as a substitute for nitrogen-containing compatible solutes (Ectothiorhodospira halochloris). Arch. Microbiol. 153:607-613.
-
(1990)
Arch. Microbiol.
, vol.153
, pp. 607-613
-
-
Galinski, E.A.1
Herzog, R.2
-
17
-
-
0024025446
-
Biochemical and genetic characterization of osmoregulatory trehalose synthesis in Escherichia coli
-
Giæver, H. M., O. B. Styrvold, I. Kaasen, and A. R. Strøm. 1988. Biochemical and genetic characterization of osmoregulatory trehalose synthesis in Escherichia coli. J. Bacteriol. 170:2841-2849.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 2841-2849
-
-
Giæver, H.M.1
Styrvold, O.B.2
Kaasen, I.3
Strøm, A.R.4
-
18
-
-
8744238277
-
Glutamine, glutamate, and α-glucosylglycerate are the major osmotic solutes accumulated by Erwinia chrysanthemi strain 3937
-
Goude, R., S. Renaud, S. Bonnassie, T. Bernard, and C. Blanco. 2004. Glutamine, glutamate, and α-glucosylglycerate are the major osmotic solutes accumulated by Erwinia chrysanthemi strain 3937. Appl. Environ. Microbiol. 70:6535-6541.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 6535-6541
-
-
Goude, R.1
Renaud, S.2
Bonnassie, S.3
Bernard, T.4
Blanco, C.5
-
19
-
-
0034870382
-
Biochemical characterization of glucosylglycerol-phosphate synthase of Synechocystis sp. strain PCC 6803: Comparison of crude, purified, and recombinant enzymes
-
Hagemann, M., U. Effmert, T. Kerstan, A. Schoor, and N. Erdmann. 2001. Biochemical characterization of glucosylglycerol-phosphate synthase of Synechocystis sp. strain PCC 6803: comparison of crude, purified, and recombinant enzymes. Curr. Microbiol. 43:278-283.
-
(2001)
Curr. Microbiol.
, vol.43
, pp. 278-283
-
-
Hagemann, M.1
Effmert, U.2
Kerstan, T.3
Schoor, A.4
Erdmann, N.5
-
20
-
-
0001912876
-
Thermoadaptation of methanogenic bacteria by intracellular ion concentration
-
Hensel, R., and H. König. 1988. Thermoadaptation of methanogenic bacteria by intracellular ion concentration. FEMS Microbiol. Lett. 49:75-79.
-
(1988)
FEMS Microbiol. Lett.
, vol.49
, pp. 75-79
-
-
Hensel, R.1
König, H.2
-
21
-
-
0038347461
-
Low molecular weight carbohydrates of the Bangiophycidae (Rhodophyta)
-
Karsten, U., J. A. West, G. C. Zuccarello, R. Engbrodt, A. Yokoyama, Y. Hara, and J. Brodie. 2003. Low molecular weight carbohydrates of the Bangiophycidae (Rhodophyta). J. Phycol. 39:584-589.
-
(2003)
J. Phycol.
, vol.39
, pp. 584-589
-
-
Karsten, U.1
West, J.A.2
Zuccarello, G.C.3
Engbrodt, R.4
Yokoyama, A.5
Hara, Y.6
Brodie, J.7
-
23
-
-
0028116826
-
Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search
-
Koonin, E. V., and R. L. Tatusov. 1994. Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search. J. Mol. Biol. 244:125-132.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 125-132
-
-
Koonin, E.V.1
Tatusov, R.L.2
-
24
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
25
-
-
0025165550
-
Biosynthesis of cyclic 2,3-diphosphoglycerate. Isolation and characterization of 2-phosphoglycerate kinase and cyclic 2,3-diphosphoglycerate synthetase from Methanothermus fervidus
-
Lehmacher, A., A. B. Vogt, and R. Hensel. 1990. Biosynthesis of cyclic 2,3-diphosphoglycerate. Isolation and characterization of 2-phosphoglycerate kinase and cyclic 2,3-diphosphoglycerate synthetase from Methanothermus fervidus. FEBS Lett. 272:94-98.
-
(1990)
FEBS Lett.
, vol.272
, pp. 94-98
-
-
Lehmacher, A.1
Vogt, A.B.2
Hensel, R.3
-
26
-
-
0028981456
-
Accumulation of mannosylglycerate and di-myo-inositol-phosphate by Pyrococcus furiosus in response to salinity and temperature
-
Martins, L. O., and H. Santos. 1995. Accumulation of mannosylglycerate and di-myo-inositol-phosphate by Pyrococcus furiosus in response to salinity and temperature. Appl. Environ. Microbiol. 61:3299-3303.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3299-3303
-
-
Martins, L.O.1
Santos, H.2
-
27
-
-
0033544948
-
Biosynthesis of mannosylglycerate in the thermophilic bacterium Rhodothermus marinus. Biochemical and genetic characterization of a mannosylglycerate synthase
-
Martins, L. O., N. Empadinhas, J. D. Marugg, C. Miguel, C. Ferreira, M. S. da Costa, and H. Santos. 1999. Biosynthesis of mannosylglycerate in the thermophilic bacterium Rhodothermus marinus. Biochemical and genetic characterization of a mannosylglycerate synthase. J. Biol. Chem. 274:35407-35414.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 35407-35414
-
-
Martins, L.O.1
Empadinhas, N.2
Marugg, J.D.3
Miguel, C.4
Ferreira, C.5
Da Costa, M.S.6
Santos, H.7
-
28
-
-
2542594077
-
Identifying latent enzyme activities: Substrate ambiguity within modern bacterial sugar kinases
-
Miller, B. G., and R. T. Raines. 2004. Identifying latent enzyme activities: substrate ambiguity within modern bacterial sugar kinases. Biochemistry 43:6387-6392.
-
(2004)
Biochemistry
, vol.43
, pp. 6387-6392
-
-
Miller, B.G.1
Raines, R.T.2
-
29
-
-
11844271472
-
Overexpression and purification of Pyrococcus abyssi phosphopantetheine adenylyltransferase from an optimized synthetic gene for NMR studies
-
Nalezkova, M., A. de Groot, M. Graf, P. Gans, and L. Blanchard. 2005. Overexpression and purification of Pyrococcus abyssi phosphopantetheine adenylyltransferase from an optimized synthetic gene for NMR studies. Protein Expr. Purif. 39:296-306.
-
(2005)
Protein Expr. Purif.
, vol.39
, pp. 296-306
-
-
Nalezkova, M.1
De Groot, A.2
Graf, M.3
Gans, P.4
Blanchard, L.5
-
30
-
-
0033117461
-
Catalytic promiscuity and the evolution of new enzymatic activities
-
O'Brien, P. J., and D. Herschlag. 1999. Catalytic promiscuity and the evolution of new enzymatic activities. Chem. Biol. 6:91-105.
-
(1999)
Chem. Biol.
, vol.6
, pp. 91-105
-
-
O'Brien, P.J.1
Herschlag, D.2
-
31
-
-
0029799968
-
The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: Proposal of Nocardiopsuceae fam. nov
-
Rainey, F. A., N. Ward-Rainey, R. M. Kroppenstedt, and E. Stackebrandt. 1996. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsuceae fam. nov. Int. J. Syst. Bacteriol. 46:1088-1092.
-
(1996)
Int. J. Syst. Bacteriol.
, vol.46
, pp. 1088-1092
-
-
Rainey, F.A.1
Ward-Rainey, N.2
Kroppenstedt, R.M.3
Stackebrandt, E.4
-
32
-
-
11844300840
-
Osmoadaptation and osmoregulation in archaea: Update 2004
-
Roberts, M. F. 2004. Osmoadaptation and osmoregulation in archaea: update 2004. Front. Biosci. 9:1999-2019.
-
(2004)
Front. Biosci.
, vol.9
, pp. 1999-2019
-
-
Roberts, M.F.1
-
33
-
-
0026748611
-
Composition, variation, and dynamics of major osmotic solutes in Methanohalophilus strain FDF1
-
Robertson, D. E., M. Lai, R. P. Gunsalus, and M. F. Roberts. 1992. Composition, variation, and dynamics of major osmotic solutes in Methanohalophilus strain FDF1. Appl. Environ. Microbiol. 58:2438-2443.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2438-2443
-
-
Robertson, D.E.1
Lai, M.2
Gunsalus, R.P.3
Roberts, M.F.4
-
34
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
35
-
-
0036742110
-
Compatible solutes of organisms that live in hot saline environments
-
Santos, H., and M. S. da Costa. 2002. Compatible solutes of organisms that live in hot saline environments. Environ. Microbiol. 4:501-509.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 501-509
-
-
Santos, H.1
Da Costa, M.S.2
-
36
-
-
0021105289
-
Cyclic-2,3-diphosphoglycerate levels in Methanobacterium thermoautotrophicum reflect inorganic phosphate availability
-
Seely, R. J., R. D. Krueger, and D. E. Fahrney. 1983. Cyclic-2,3-diphosphoglycerate levels in Methanobacterium thermoautotrophicum reflect inorganic phosphate availability. Biochem. Biophys. Res. Commun. 116:1125-1128.
-
(1983)
Biochem. Biophys. Res. Commun.
, vol.116
, pp. 1125-1128
-
-
Seely, R.J.1
Krueger, R.D.2
Fahrney, D.E.3
-
37
-
-
0141960378
-
Osmotic adaptation of Thermus thermophilus RQ-1: Lesson from a mutant deficient in synthesis of trehalose
-
Silva, Z., S. Alarico, A. Nobre, R. Horlacher, J. Marugg, W. Boos, A. I. Mingote, and M. S. da Costa. 2003. Osmotic adaptation of Thermus thermophilus RQ-1: lesson from a mutant deficient in synthesis of trehalose. J. Bacteriol. 185:5943-5952.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5943-5952
-
-
Silva, Z.1
Alarico, S.2
Nobre, A.3
Horlacher, R.4
Marugg, J.5
Boos, W.6
Mingote, A.I.7
Da Costa, M.S.8
-
38
-
-
14544285469
-
The high-affinity maltose/trehalose ABC transporter in the extremely thermophilic bacterium Thermus thermophilus HB27 also recognizes sucrose and palatinose
-
Silva, Z., M. M. Sampaio, A. Henne, A. Bohm, R. Gutzat, W. Boos, M. S. da Costa, and H. Santos. 2005. The high-affinity maltose/trehalose ABC transporter in the extremely thermophilic bacterium Thermus thermophilus HB27 also recognizes sucrose and palatinose. J. Bacteriol. 187:1210-1218.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1210-1218
-
-
Silva, Z.1
Sampaio, M.M.2
Henne, A.3
Bohm, A.4
Gutzat, R.5
Boos, W.6
Da Costa, M.S.7
Santos, H.8
-
39
-
-
0031820043
-
Conserved sequence motifs among bacterial, eukaryotic, and archaeal phosphatases that define a new phosphohydrolase superfamily
-
Thaller, M. C., S. Schippa, and G. M. Rossolini. 1998. Conserved sequence motifs among bacterial, eukaryotic, and archaeal phosphatases that define a new phosphohydrolase superfamily. Protein Sci. 7:1647-1652.
-
(1998)
Protein Sci.
, vol.7
, pp. 1647-1652
-
-
Thaller, M.C.1
Schippa, S.2
Rossolini, G.M.3
-
40
-
-
0031574072
-
The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
41
-
-
0001518044
-
Purification of UDP galactose:sn-glycerol-3-phosphate-D- galactosyltransferase from Poterioochromonas malhamensis
-
Thomson, K.-S. 1983. Purification of UDP galactose:sn-glycerol-3- phosphate-D-galactosyltransferase from Poterioochromonas malhamensis. Biochim. Biophys. Acta 759:154-159.
-
(1983)
Biochim. Biophys. Acta
, vol.759
, pp. 154-159
-
-
Thomson, K.-S.1
-
42
-
-
0025311481
-
Biosynthesis and fate of compatible solutes in extremely halophilic phototrophic eubacteria
-
Trüper, H. G., and E. A. Galinski. 1990. Biosynthesis and fate of compatible solutes in extremely halophilic phototrophic eubacteria. FEMS Microbiol. Rev. 75:247-254.
-
(1990)
FEMS Microbiol. Rev.
, vol.75
, pp. 247-254
-
-
Trüper, H.G.1
Galinski, E.A.2
-
43
-
-
0032493440
-
Activity of the yeast MNN1 alpha-1,3-mannosyltransferase requires a motif conserved in many other families of glycosyltransferases
-
Wiggins, C. A. R., and S. Munro. 1998. Activity of the yeast MNN1 alpha-1,3-mannosyltransferase requires a motif conserved in many other families of glycosyltransferases. Proc. Natl. Acad. Sci. USA 95:7945-7950.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 7945-7950
-
-
Wiggins, C.A.R.1
Munro, S.2
-
44
-
-
4644225725
-
The DNA element controlling expression of the varicella-zoster virus open reading frame 28 and 29 genes consists of two divergent unidirectional promoters which have a common USF site
-
Yang, M., J. Hay, and W. T. Ruyechan. 2004. The DNA element controlling expression of the varicella-zoster virus open reading frame 28 and 29 genes consists of two divergent unidirectional promoters which have a common USF site. J. Virol. 78:10939-10952.
-
(2004)
J. Virol.
, vol.78
, pp. 10939-10952
-
-
Yang, M.1
Hay, J.2
Ruyechan, W.T.3
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