Analysis of ABA Hypersensitive Germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis

Plant Journal

Volumn 44, Issue 6, 2005, Pages 972-984

  Nishimura, Noriyuki ^a,b   Kitahata, Nobutaka ^c   Seki, Motoaki ^b,d   Narusaka, Yoshihiro ^e   Narusaka, Mari ^e   Kuromori, Takashi ^d   Asami, Tadao ^c   Shinozaki, Kazuo ^b,d   Hirayama, Takashi ^a,b,d  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

^b RIKEN TSUKUBA INSTITUTE   (Japan)

^c Japan Science and Technology Agency   (Japan)

^d RIKEN YOKOHAMA INSTITUTE   (Japan)

^e TOKYO GAKUGEI UNIVERSITY   (Japan)

Author keywords

Abscisic acid; PARN; Salicylic acid; Stress response

Indexed keywords

ENZYME KINETICS; HORMONES; MUTAGENS; PLANTS (BOTANY); SEED;

OSMOTIC STRESS; PARN; STRESS RESPONSE;

RNA;

ABSCISIC ACID; HORMONES; NUCLEIC ACIDS; PLANTS; SALICYLIC ACID; SEEDS;

ARABIDOPSIS; EUKARYOTA;

ABSCISIC ACID; ARABIDOPSIS PROTEIN; EXORIBONUCLEASE; MESSENGER RNA; POLY(A)-SPECIFIC RIBONUCLEASE; POLYADENYLATE SPECIFIC RIBONUCLEASE; SALICYLIC ACID;

ALTERNATIVE RNA SPLICING; ARABIDOPSIS; ARTICLE; BIOLOGICAL MODEL; DNA MICROARRAY; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; HISTOLOGY; METABOLISM; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PHENOTYPE; RNA STABILITY; TRANSGENIC PLANT;

ABSCISIC ACID; ALTERNATIVE SPLICING; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; DNA MUTATIONAL ANALYSIS; EXORIBONUCLEASES; GENE EXPRESSION REGULATION, PLANT; MODELS, BIOLOGICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; RNA STABILITY; RNA, MESSENGER; SALICYLIC ACID;

EID: 31144479273     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2005.02589.x     Document Type: Article

References (62)

1. Arabidopsis Genome Initiative ( 2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796 815.
2. Arnon D.I. ( 1949) Copper enzymes in isolated chloroplasts. Polyphenoloxidases in Beta vulgaris. Plant. Physiol. 24, 1 15.
3. 2]abscisic acid for use as a stable and pure internal standard. J. Chem. Res.S) 11, 658 659.
4. Audenaert K. De Meyer G.B. Hofte M.M. ( 2002) Abscisic acid determines basal susceptibility of tomato to Botrytis cinerea and suppresses salicylic acid-dependent signaling mechanisms. Plant. Physiol. 128, 491 501.
5. Baggs J.E. Green C.B. ( 2003) Nocturnin, a deadenylase in Xenopus laevis retina: a mechanism for posttranscriptional control of circadian-related mRNA. Curr. Biol. 13, 189 198.
6. Barth C. Moeder W. Klessig D.F. Conklin P.L. ( 2004) The timing of senescence and response to pathogens is altered in the ascorbate-deficient Arabidopsis mutant vitamin c-1. Plant. Physiol. 134, 1784 1792.
7. Bell C. Ecker J. ( 1994) Assignment of thirty microsatellite loci to the linkage map of Arabidopsis. Genomics, 19, 137 144.
8. Borsani O. Valpuesta V. Botella M.A. ( 2001) Evidence for a role of salicylic acid in the oxidative damage generated by NaCl and osmotic stress in Arabidopsis seedlings. Plant. Physiol. 126, 1024 1030.
9. Carrington J.C. Ambros V. ( 2003) Role of microRNAs in plant and animal development. Science, 301, 336 338.
10. Chiba Y. Johnson M.A. Lidder P. Vogel J.T. van Erp H. Green P.J. ( 2004) AtPARN is an essential poly(A) ribonuclease in Arabidopsis. Gene, 328, 95 102.
11. Chini A. Grant J.J. Seki M. Shinozaki K. Loake G.J. ( 2004) Drought tolerance established by enhanced expression of the CC-NBS-LRR gene, ADR1, requires salicylic acid, EDS1 and ABI1. Plant J. 38, 810 822.
12. Clough S.J. Bent A.F. ( 1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735 743.
13. Dietrich R.A. Delaney T.P. Uknes S.J. Ward E.R. Ryals J.A. Dangl J.L. ( 1994) Arabidopsis mutants simulating disease resistance response. Cell, 77, 565 577.
14. Fan J. Yang X. Wang W. Wood W.H. III. Becker K.G. Gorospe M. ( 2002) Global analysis of stress-regulated mRNA turnover by using cDNA arrays. Proc. Natl Acad. Sci. USA, 99, 10611 10616.
15. Finkelstein R.R. Gampala S.S. Rock C.D. ( 2002) Abscisic acid signaling in seeds and seedlings. Plant Cell, 14, S15 S45.
16. Frischmeyer P.A. van Hoof A. O'Donnell K. Guerrerio A.L. Parker R. Dietz H.C. ( 2002) An mRNA surveillance mechanism that eliminates transcripts lacking termination codons. Science, 295, 2258 2261.
17. Goujon T. Minic Z. El Amrani A. Lerouxel O. Aletti E. Lapierre C. Joseleau J.P. Jouanin L. ( 2003) AtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-xylosidase gene, is involved in secondary cell wall metabolism and plant development. Plant J. 33, 677 690.
18. Greenberg J.T. Guo A. Klessig D.F. Ausubel F.M. ( 1994) Programmed cell death in plants: a pathogen-triggered response activated coordinately with multiple defense functions. Cell, 77, 551 563.
19. Grigull J. Mnaimneh S. Pootoolal J. Robinson M.D. Hughes T.R. ( 2004) Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol. Cell Biol. 24, 5534 5547.
20. 2 is the likely intermediary signaling molecule for the response. Plant J. 22, 87 95.
21. Han M.H. Goud S. Song L. Fedoroff N. ( 2004) The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc. Natl Acad. Sci. USA, 101, 1093 1098.
22. Hellmann H. Estelle M. ( 2002) Plant development: regulation by protein degradation. Science, 297, 793 797.
23. Hirayama T. Kieber J.J. Hirayama N. Kogan M. Guzman P. Nourizadeh S. Alonso J.M. Dailey W.P. Dancis A. Ecker J.R. ( 1999) RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson disease-related copper transporter, is required for ethylene signaling in Arabidopsis. Cell, 97, 383 393.
24. Hochstrasser M. ( 1995) Ubiquitin, proteasomes, and the regulation of intracellular protein degradation. Curr. Opin. Cell Biol. 7, 215 223.
25. van Hoof A. Frischmeyer P.A. Dietz H.C. Parker R. ( 2002) Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science, 295, 2262 2264.
26. Hugouvieux V. Kwak J.M. Schroeder J.I. ( 2001) An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis. Cell, 106, 477 487.
27. Hutvagner G. Zamore P.D. ( 2002) RNAi: nature abhors a double-strand. Curr. Opin. Genet. Dev. 12, 225 232.
28. Iuchi S. Kobayashi M. Taji T. Naramoto M. Seki M. Kato T. Tabata S. Kakubari Y. Yamaguchi-Shinozaki K. Shinozaki K. ( 2001) Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. Plant J. 27, 325 333.
29. Jing Q. Huang S. Guth S. Zarubin T. Motoyama A. Chen J. Di Padova F. Lin S.C. Gram H. Han J. ( 2005) Involvement of microRNA in AU-rich element-mediated mRNA instability. Cell, 120, 623 634.
30. Jirage D. Zhou N. Cooper B. Clarke J.D. Dong X. Glazebrook J. ( 2001) Constitutive salicylic acid-dependent signaling in cpr1 and cpr6 mutants requires PAD4. Plant J. 26, 395 407.
31. Johnson M.A. Perez-Amador M.A. Lidder P. Green P.J. ( 2000) Mutants of Arabidopsis defective in a sequence-specific mRNA degradation pathway. Proc. Natl Acad. Sci. USA, 97, 13991 13996.
32. Kang H.-G. Foley R.C. Onate-Sanchez L. Lin C. Singh K.B. ( 2003) Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid. Plant J. 35, 362 372.
33. Kasuga M. Liu Q. Miura S. Yamaguchi-Shinozaki K. Shinozaki K. ( 1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat. Biotechnol. 17, 287 291.
34. Koch E. Slusarenko A. ( 1990) Arabidopsis is susceptible to infection by a downy mildew fungus. Plant Cell, 2, 437 445.
35. Kuromori T. Hirayama T. Kiyosue Y. Takabe H. Mizukado S. Sakurai T. Akiyama K. Kamiya A. Ito T. Shinozaki K. ( 2004) A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis. Plant J. 37, 897 905.
36. Kushiro T. Okamoto M. Nakabayashi K. Yamagishi K. Kitamura S. Asami T. Hirai N. Koshiba T. Kamiya Y. Nambara E. ( 2004) The Arabidopsis cytochrome P450 CYP707A encodes ABA 8′-hydroxylases: key enzymes in ABA catabolism. EMBO J. 23, 1647 1656.
37. Lai W.S. Kennington E.A. Blackshear P.J. ( 2003) Tristetraprolin and its family members can promote the cell-free deadenylation of AU-rich element-containing mRNAs by poly(A) ribonuclease. Mol. Cell Biol. 23, 3798 3812.
38. Lorrain S. Vailleau F. Balague C. Roby D. ( 2003) Lesion mimic mutants: keys for deciphering cell death and defense pathways in plants? Trends Plant Sci. 8, 263 271.
39. Lu C. Fedoroff N. ( 2000) A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell, 12, 2351 2366.
40. Mikolajczyk M. Awotunde O.S. Muszynska G. Klessig D.F. Dobrowolska G. ( 2000) Osmotic stress induces rapid activation of a salicylic acid-induced protein kinase and a homolog of protein kinase ASK1 in tobacco cells. Plant Cell, 12, 165 178.
41. Narusaka Y. Narusaka M. Seki M. Umezawa T. Ishida J. Nakashima M. Enju A. Shinozaki K. ( 2004) Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol. Biol. 55, 327 342.
42. Nishimura N. Yoshida T. Murayama M. Asami T. Shinozaki K. Hirayama T. ( 2004) Isolation and characterization of novel mutants affecting the abscisic acid sensitivity of Arabidopsis germination and seedling growth. Plant Cell Physiol. 45, 1485 1499.
43. Overmyer K. Brosche M. Kangasjarvi J. ( 2003) Reactive oxygen species and hormonal control of cell death. Trends Plant Sci. 8, 335 342.
44. Parker R. Song H. ( 2004) The enzyme and control of eukaryotic mRNA turnover. Nat. Struct. Mol. Biol. 11, 121 127.
45. Pastori G.M. Kiddle G. Antoniw J. Bernard S. Veljovic-Jovanovic S. Verrier P.J. Noctor G. Foyer C.H. ( 2003) Leaf vitamin C contents modulate plant defense transcripts and regulate genes that control development through hormone signaling. Plant Cell, 15, 939 951.
46. Pei Z.M. Murata Y. Benning G. Thomine S. Klusener B. Allen G.J. Grill E. Schroeder J.I. ( 2000) Calcium channels activated by hydrogen peroxide mediate abscisic acid signalling in guard cells. Nature, 406, 731 734.
47. Perez-Amador M.A. Lidder P. Johnson M.A. Landgraf J. Wisman E. Green P.J. ( 2001) New molecular phenotypes in the dst mutants of Arabidopsis revealed by DNA microarray analysis. Plant Cell, 13, 2703 2717.
48. Purugganan M.M. Braam J. Fry S.C. ( 1997) The Arabidopsis TCH4 xyloglucan endotransglycosylase (substrate specificity, pH optimum, and cold tolerance). Plant. Physiol. 115, 181 190.
49. +-mediated cleavage. J. Biol. Chem. 277, 5982 5987.
50. Reverdatto S.V. Dutko J.A. Chekanova J.A. Hamilton D.A. Belostotsky D.A. ( 2004) mRNA deadenylation by PARN is essential for embryogenesis in higher plants. RNA, 10, 1200 1214.
51. Rodriguez-Gabriel M.A. Burns G. McDonald W.H. Martin V. Yates J.R. III.. Bahler J. Russell P. ( 2003) RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress. EMBO J. 22, 6256 6266.
52. Seki M. Narusaka M. Ishida J. et al. ( 2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31, 279 292.
53. Smalle J. Kurepa J. Yang P. Emborg T.J. Babiychuk E. Kushnir S. Vierstra R.D. ( 2003) The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling. Plant Cell, 15, 965 980.
54. Sunkar R. Zhu J.K. ( 2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16, 2001 2019.
55. Tan B.C. Joseph L.M. Deng W.T. Liu L. Li Q.B. Cline K. McCarty D.R. ( 2003) Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family. Plant J. 35, 44 56.
56. 2 accumulation in papillae and hypersensitive response during the barley-powdery mildew interaction. Plant J. 11, 1187 1194.
57. Wilusz C.J. Wilusz J. ( 2004) Bringing the role of mRNA decay in the control of gene expression into focus. Trends Genet. 20, 491 497.
58. Wilusz C.J. Wormington M. Peltz S.W. ( 2001) The cap-to-tail guide to mRNA turnover. Nat. Rev. Mol. Cell Biol. 237, 237 246.
59. Xing H. Tan L. An L. Zhao Z. Wang S. Zhang C. ( 2004) Evidence for the involvement of nitric oxide and reactive oxygen species in osmotic stress tolerance of wheat seedlings: inverse correlation between leaf abscisic acid accumulation and leaf water loss. Plant Growth Regul. 42, 61 68.
60. Xiong L. Gong Z. Rock C.D. Subramanian S. Guo Y. Xu W. Galbraith D. Zhu J.K. ( 2001) Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis. Dev. Cell, 1, 771 781.
61. Zhao Z. Chen G. Zhang C. ( 2001) Interaction between reactive oxygen species and nitric oxide in drought-induced abscisic acid synthesis in root tip of wheat seedlings. Aust. J. Plant Physiol. 28, 1055 1061.
62. Zhou R. Squires T.M. Ambrose S.J. Abrams S.R. Ross A.R. Culter A.J. ( 2004) Rapid extraction of abscisic acid and its metabolites for liquid chromatography-tandem mass spectrometry. J. Chromatogr. A, 1010, 75 85.