Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid

Plant Journal

Volumn 35, Issue 3, 2003, Pages 362-372

  Kang, Hong Gu ^a,c   Foley, Rhonda C ^b   Oñate Sánchez, Luis ^b   Lin, Chentao ^a   Singh, Karam B ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CSIRO   (Australia)

^c United States Department of Agriculture Agricultural Research Service and Boyce Thompson Institute for Plant Research   (United States)

Author keywords

AtDof3.6; Basic helix loop helix; Dof; Jasmonic acid; Salicylic acid

Indexed keywords

DATABASE SYSTEMS; DNA; PROTEINS;

SALICYLIC ACID (SA);

GENES;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; CYCLOPENTANES; DNA, PLANT; DNA-BINDING PROTEINS; GENE EXPRESSION; GENES, PLANT; HELIX-LOOP-HELIX MOTIFS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PROMOTER REGIONS (GENETICS); PROTEIN STRUCTURE, TERTIARY; RNA, PLANT; SALICYLIC ACID; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0041565104     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01812.x     Document Type: Article

References (56)

1. Abe, H., Yamaguchi-Shinozaki, K., Urao, T., Iwasaki, T., Hosokawa, D. and Shinozaki, K. (1997) Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell, 9, 1859-1868.
2. Aoyama, T. and Chua, N.H. (1997) A glucocorticoid-mediated transcriptional induction system in transgenic plants. Plant J. 11, 605-612.
3. Baumann, K., De Paolis, A., Costantino, P. and Gualberti, G. (1999) The DNA binding site of the Dof protein NtBBF1 is essential for tissue-specific and auxin-regulated expression of the rolB oncogene in plants. Plant Cell, 11, 323-334.
4. Benhamou, N., Mazau, D. and Esquerre-Tugaye, M.D. (1990) Immuno-cytochemical Iocalisation of hydroxyproline-rich glycoproteins in tomato root cells infected by Fusarium oxysporum f. sp. radici-lycopersich study of a compatible interaction. Mol. Plant Pathol. 80, 163-173.
5. Berman, B.P., Nibu, Y., Pfeiffer, B.D., Tomancak, P., Celniker, S.E., Levine, M., Rubin, G.M. and Eisen, M.B. (2002) Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc. Natl. Acad. Sci. USA, 99, 757-762.
6. Bowling, S.A., Clarke, J.D., Liu, Y., Klessig, D.F. and Dong, X. (1997) The cpr5 mutant of Arabidopsis expresses both NPR1dependent and NPR1-independent resistance. Plant Cell, 9, 1573-1584.
7. Bucher, M., Brunner, S., Zimmermann, P., Zardi, G.I., Amrhein, N., Willmitzer, L. and Riesmeier, J.W. (2002) The expression of an extensin-like protein correlates with cellular tip growth in tomato. Plant Physiol. 128, 911-923.
8. Chen, W., Chao, G. and Singh, K.B. (1996) The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites. Plant J. 10, 955-966.
9. Corbin, D.R., Sauer, N. and Lamb, C.J. (1987) Differential regulation of a hydroxyproline-rich glycoprotein gene family in wounded and infected plants. Mol. Cell Biol. 7, 4337-4344.
10. De Paolis, A., Sabatini, S., De Pascalis, L., Costantino, P. and Capone, I. (1996) A rolB regulatory factor belongs to a new class of single zinc finger plant proteins. Plant J. 10, 215-223.
11. Diatchenko, L., Lau, Y.F., Campbell, A.P. et al. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA, 93, 6025-6030.
12. Diaz, I., Vicente-Carbajosa, J., Abraham, Z., Martinez, M., Isabel-La Moneda, I. and Carbonero, P. (2002) The GAMYB protein from barley interacts with the DOF transcription factor BPBF and activates endosperm-specific genes during seed development. Plant J. 29, 453-464.
13. Eisenman, R.N. (2001) Deconstructing myc. Genes Dev. 15, 2023-2030.
14. Glazebrook, J. (2001) Genes controlling expression of defense responses in Arabidopsis- 2001 status. Curr. Opin. Plant Biol. 4, 301-308.
15. Gualberti, G., Papi, M., Bellucci, L., Ricci, I., Bouchez, D., Camilleri, C., Costantino, P. and Vittorioso, P. (2002) Mutations in the Dof zinc finger genes DAG2 and DAG1 influence with opposite effects the germination of Arabidopsis seeds. Plant Cell, 14, 1253-1263.
16. Isabel-LaMoneda, I., Diaz, I., Martinez, M., Mena, M. and Carbonero, P. (2003) SAD: a new DOF protein from barley that activates transcription of a cathepsin B-like thiol protease gene in the aleurone of germinating seeds. Plant J. 33, 329-340.
17. Kachroo, P., Leong S.A. and Chattoo, B.B. (1995) Mg-SINE: a short interspersed nuclear element from the rice blast fungus Magnaporthe grisea. Proc. Natl. Acad. Sci. USA, 92, 11125-11129.
18. Kang, H., Fang, Y. and Singh, K.B. (1999) A glucocorticoidinducible transcription system causes severe growth defects in Arabidopsis and induces defense-related genes. Plant J. 20, 127-133.
19. Kang, H.G. and Singh, K.B. (2000) Characterization of salicylic acidresponsive, Arabidopsis Dof domain proteins: overexpression of OBP3 leads to growth defects. Plant J. 21, 329-339.
20. Kieliszewski, M.J. and Lamport, D.T. (1994) Extensin: repetitive motifs, functional sites, post-translational codes, and phylogeny. Plant J. 5, 157-172.
21. Kirik, V., Bouyer, D., Schobinger, U., Bechtold, N., Herzog, M., Bonneville, J.M. and Hulskamp, M. (2001) CPR5 is involved in cell proliferation and cell death control and encodes a novel transmembrane protein. Curr. Biol. 27, 1891-1895.
22. Lin, C., Ahmad, M., Gordon, D. and Cashmore, A.R. (1995) Expression of an Arabidopsis cryptochrome gene in transgenic tobacco results in hypersensitivity to blue, UV-A, and green light. Proc. Natl. Acad. Sci. USA, 92, 8423-8427.
23. Maleck, K., Levine, A., Eulgem, T., Morgan, A., Schmid, J., Lawton, K.A., Dangl, J.L. and Dietrich, R.A. (2000) The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nat. Genet. 26, 403-410.
24. Mazau, D. and Esquerre-Tugaye, M.D. (1986) Hydroxyproline-rich glycoprotein accumulation in the cell walls of plants infected by various pathogens. Physiol. Mol. Plant Pathol. 29, 147-157.
25. Memelink, J., Swords, K.M., de Kam, R.J., Schilperoort, R.A., Hoge, J.H. and Staehelin, L.A. (1993) Structure and regulation of tobacco extensin. Plant J. 4, 1011-1022.
26. Mena, M., Vicente-Carbajosa, J., Schmidt, R.J. and Carbonero, P. (1998) An endosperm-specific DOF protein from barley, highly conserved in wheat, binds to and activates transcription from the prolamin-box of a native B-hordein promoter in barley endosperm. Plant J. 16, 53-62.
27. Mena, M., Cejudo, F.J., Isabel-Lamoneda, I. and Carbonero, P. (2002) A role for the DOF transcription factor BPBF in the regulation of gibberellin-responsive genes in barley aleurone. Plant. Physiol. 130, 111-119.
28. Merkouropoulos, G., Barnett, D.C. and Shirsat, A.H. (1999) The Arabidopsis extensin gene is developmentally regulated, is induced by wounding, methyl jasmonate, abscisic and salicylic acid, and codes for a protein with unusual motifs. Planta, 208, 212-219.
29. Oñate-Sánchez, L. and Singh, K.B. (2002) Identification of Arabidopsis ethylene-responsive element-binding factors with distinct induction kinetics after pathogen infection. Plant Physiol. 128, 1313-1322.
30. Papi, M., Sabatini, S., Altamura, M.M., Hennig, L., Schafer, E., Costantino, P. and Vittorioso, P. (2002) Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects response to light and integrity of the testa of Arabidopsis seeds. Plant Physiol. 128, 411-417.
31. Pelengaris, S., Rudolph, B. and Littlewood, T. (2000) Action of Myc in vivo proliferation and apoptosis. Curr. Opin. Genet. Dev. 10, 100-105.
32. Penninckx, I.A., Thomma, B.P., Buchala, A., Metraux, J.P. and Broekaert, W.F. (1998) Concomitant activation of jasmonate and ethylene response pathways is required for induction of plant defensin gene in Arabidopsis. Plant Cell, 10, 2103-2113.
33. Plesch, G., Ehrhardt, T. and Mueller-Roeber, B. (2001) Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression. Plant J. 28, 455-464.
34. Rao, M.V., Lee, H., Creelman, R.A., Mullet, J.E. and Davis, K.R. (2000) Jasmonic acid signaling modulates ozone-induced hypersensitive cell death. Plant Cell, 12, 1633-1646.
35. Rebeiz, M., Reeves, N.L. and Posakony, J.W. (2002) SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation. Proc. Natl. Acad. Sci. USA, 23, 9888-9893.
36. Sambrook, J., Maniatis, T. and Fritsch, E.F. (1989) Molecular cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
37. Schenk, P.M., Kazan, K., Wilson, I., Anderson, J.P., Richmond, T., Somerville, S.C. and Manners, J.M. (2000) Coordinated plant defense responses in Arabidopsis revealed by microarray analysis. Proc. Natl. Acad. Sci. USA, 97, 11655-11660.
38. Shah, J., Kachroo, P. and Klessig, D.F. (1999) The Arabidopsis ssil mutation restores pathogenesis-related gene expression in npr1 plants and renders defensin gene expression salicylic acid dependent. Plant Cell, 11, 191-206.
39. Showalter, A.M., Bell, J.N., Cramer, C.L., Bailey, J.A., Varner, J.E. and Lamb, C.J. (1985) Accumulation of hydroxyproline-rich glycoprotein mRNAs in response to fungal elicitor and infection. Proc. Natl. Acad. Sci. USA, 82, 6551-6555.
40. Silva, H., Yoshioka, K., Dooner, H.K. and Klessig, D.F. (1999) Characterization of a new Arabidopsis mutant exhibiting enhanced disease resistance. Mol. Plant Microbe Interact. 12, 1053-1063.
41. Singh, K.B., Foley, R.C. and Oñate-Sénchez, L. (2002) Transcription factors in plant defense and stress responses. Curr. Opin. Plant Biol. 5, 430-436.
42. Staswick, P.E., Su, W. and Howell, H. (1992) Methyl jasmonate inhibition of root growth and induction of a leaf protein are decreased in an Arabidopsis thaliana mutant. Proc. Natl. Acad. Sci. USA, 89, 6837-6840.
43. Staswick, P.E., Yuen, G.Y. and Lehman, C.C. (1998) Jasmonate signaling mutants of Arabidopsis are susceptible to the soil fungus Pythium irregulare. Plant J. 15, 747-754.
44. Staswick, P.E., Tiryaki, I. and Rowe, M.L. (2002) Jasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acids in an assay for adenylation. Plant Cell, 14, 1405-1405.
45. Vicente-Carbajosa, J., Moose, S.P., Parsons, R.L. and Schmidt, R.J. (1997) A maize zinc-finger protein binds the prolamin box in zein gene promoters and interacts with the basic leucine zipper transcriptional activator Opaque2. Proc. Natl. Acad. Sci. USA, 94, 7685-7690.
46. Wagner, A. (1999) Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes. Bioinformatics, 15, 776-784.
47. Washio, K. (2001)Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 1520, 54-62.
48. Ward, E.R., Uknes, S.J., Williams, S.C., Dincher, S.S., Wiederhold, D.L., Alexander, D.C., Ahl-Groy, P., Metraux, J.P. and Ryals, J.A. (1991) Coordinate gene activity in response to agents that induce systemic acquired resistance. Plant Cell, 3, 1085-1094.
49. Wesley, S.V., Helliwell, C.A., Smith, N.A. et al. (2001) Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J. 27, 581-590.
50. Yanagisawa, S. (1996) A novel multigene family that the gene for a maize DNA-binding protein, MNB1a belongs to isolation of genomic clones from this family and some aspects of its molecular evolution. Biochem. Mol. Biol. Int. 38, 665-673.
51. Yanagisawa, S. (1997) Dof DNA-binding domains of plant transcription factors contribute to multiple protein-protein interactions. Eur. J. Biochem. 250, 403-410.
52. Yanagisawa, S. (2000) Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21,281-288.
53. Yanagisawa, S. (2002) The Dof family of plant transcription factors. Trends Plant. Sci. 7, 555-560.
54. Yanagisawa, S. and Schmidt, R.J. (1999) Diversity and similarity among recognition sequences of Doftranscription factors. Plant J. 17, 209-214.
55. Yanagisawa, S. and Sheen, J. (1998) Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell, 10, 75-89.
56. Zhang, B., Chen, W., Foley, R.C., Büttner, M. and Singh, K.B. (1995) Interactions between distinct types of DNA-binding proteins enhance binding to ocs element promoter sequences. Plant Cell, 7, 2241-2252.