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Volumn 56, Issue 1, 2006, Pages 65-74

Molecular evolution of the nif gene cluster carrying nifl1 and nifl2 genes in the Gram-positive phototrophic bacterium Heliobacterium chlorum

Author keywords

[No Author keywords available]

Indexed keywords

NITROGENASE; PROTEIN NIFI1; PROTEIN NIFI2; RNA 16S; UNCLASSIFIED DRUG;

EID: 31144457521     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63815-0     Document Type: Article
Times cited : (16)

References (47)
  • 2
    • 0035105144 scopus 로고    scopus 로고
    • II signal transduction proteins, pivotal players in microbial nitrogen control
    • II signal transduction proteins, pivotal players in microbial nitrogen control. Microbiol Mol Biol Rev 65, 80-105.
    • (2001) Microbiol Mol Biol Rev , vol.65 , pp. 80-105
    • Arcondeguy, T.1    Jack, R.2    Merrick, M.3
  • 4
    • 0023146787 scopus 로고
    • Heliobacillus mobilis, a peritrichously flagellated anoxyphototroph containing bacteriochlorophyll g
    • Beer-Romero, P. & Gest, H. (1987). Heliobacillus mobilis, a peritrichously flagellated anoxyphototroph containing bacteriochlorophyll g. FEMS Microbiol Lett 41, 109-114.
    • (1987) FEMS Microbiol Lett , vol.41 , pp. 109-114
    • Beer-Romero, P.1    Gest, H.2
  • 5
    • 0022227668 scopus 로고
    • Complete nucleotide sequence of the Azotobacter vinelandii nitrogenase structural gene cluster
    • Brigle, K. E., Newton, W. E. & Dean, D. R. (1985). Complete nucleotide sequence of the Azotobacter vinelandii nitrogenase structural gene cluster. Gene 37, 37-44.
    • (1985) Gene , vol.37 , pp. 37-44
    • Brigle, K.E.1    Newton, W.E.2    Dean, D.R.3
  • 6
    • 0021014224 scopus 로고
    • Bacteriochlorophyll g: A new bacteriochlorophyll from Heliobacterium chlorum
    • Brockmann, H., Jr & Lipinski, A. (1983). Bacteriochlorophyll g: a new bacteriochlorophyll from Heliobacterium chlorum. Arch Microbiol 136, 17-19.
    • (1983) Arch Microbiol , vol.136 , pp. 17-19
    • Brockmann Jr., H.1    Lipinski, A.2
  • 7
    • 0032872485 scopus 로고    scopus 로고
    • Heliorestis daurensis, gen. nov. sp. nov. an alkaliphilic rod-to-coiled-shaped phototrophic heliobacterium from a Siberian soda lake
    • Bryantseva, I. A., Gorlenko, V. M., Kompantseva, E. I., Achenbach, L. A. & Madigan, M. T. (1999). Heliorestis daurensis, gen. nov. sp. nov. an alkaliphilic rod-to-coiled-shaped phototrophic heliobacterium from a Siberian soda lake. Arch Microbiol 172, 167-174.
    • (1999) Arch Microbiol , vol.172 , pp. 167-174
    • Bryantseva, I.A.1    Gorlenko, V.M.2    Kompantseva, E.I.3    Achenbach, L.A.4    Madigan, M.T.5
  • 8
    • 0033781908 scopus 로고    scopus 로고
    • Alkaliphilic heliobacterium Heliorestis baculata sp. nov. and emended description of the genus Heliorestis
    • Bryantseva, I. A., Gorlenko, V. M., Kompantseva, E. I., Tourova, T. P., Kuznetsov, B. B. & Osipov, G. A. (2000). Alkaliphilic heliobacterium Heliorestis baculata sp. nov. and emended description of the genus Heliorestis. Arch Microbiol 174, 283-291.
    • (2000) Arch Microbiol , vol.174 , pp. 283-291
    • Bryantseva, I.A.1    Gorlenko, V.M.2    Kompantseva, E.I.3    Tourova, T.P.4    Kuznetsov, B.B.5    Osipov, G.A.6
  • 9
    • 4344560389 scopus 로고    scopus 로고
    • The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: A case of lateral gene transfer?
    • Cantera, J. J. L., Kawasaki, H. & Seki, T. (2004). The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: a case of lateral gene transfer? Microbiology 150, 2237-2246.
    • (2004) Microbiology , vol.150 , pp. 2237-2246
    • Cantera, J.J.L.1    Kawasaki, H.2    Seki, T.3
  • 10
    • 22144465311 scopus 로고    scopus 로고
    • Nitrogen fixation in the clostridia
    • Edited by W. Klipp, B. Masepohl, J. R. Gallon & W. E. Newton. Dordrecht & London: Kluwer Academic
    • Chen, J.-S. (2004). Nitrogen fixation in the clostridia. In Genetics and Regulation of Nitrogen Fixation in Free-Living Bacteria, pp. 53-64. Edited by W. Klipp, B. Masepohl, J. R. Gallon & W. E. Newton. Dordrecht & London: Kluwer Academic.
    • (2004) Genetics and Regulation of Nitrogen Fixation in Free-Living Bacteria , pp. 53-64
    • Chen, J.-S.1
  • 11
    • 0035678686 scopus 로고    scopus 로고
    • Nitrogen-fixation genes and nitrogenase activity in Clostridium acetobutylicum and Clostridium beijerinckii
    • Chen, J.-S., Toth, J. & Kasap, M. (2001). Nitrogen-fixation genes and nitrogenase activity in Clostridium acetobutylicum and Clostridium beijerinckii. J Ind Microbiol Biotechnol 27, 281-286.
    • (2001) J Ind Microbiol Biotechnol , vol.27 , pp. 281-286
    • Chen, J.-S.1    Toth, J.2    Kasap, M.3
  • 12
    • 0030047955 scopus 로고    scopus 로고
    • Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227
    • Chien, Y. T. & Zinder, S. H. (1996). Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227. J Bacteriol 178, 143-148.
    • (1996) J Bacteriol , vol.178 , pp. 143-148
    • Chien, Y.T.1    Zinder, S.H.2
  • 13
    • 12844289061 scopus 로고    scopus 로고
    • NifH and NifD sequences of heliobacteria: A new lineage in the nitrogenase phylogeny
    • Enkh-Amgalan, J., Kawasaki, H. & Seki, T. (2005). NifH and NifD sequences of heliobacteria: a new lineage in the nitrogenase phylogeny. FEMS Microbiol Lett 243, 73-79.
    • (2005) FEMS Microbiol Lett , vol.243 , pp. 73-79
    • Enkh-Amgalan, J.1    Kawasaki, H.2    Seki, T.3
  • 14
    • 0003437299 scopus 로고    scopus 로고
    • version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2004). PHILIP - Phylogeny Inference Package, version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (2004) PHILIP - Phylogeny Inference Package
    • Felsenstein, J.1
  • 15
    • 0001923680 scopus 로고
    • Heliobacterium chlorum, an anoxygenic brownish-green photosynthetic bacterium containing a "new" form of bacteriochlorophyll
    • Gest, H. & Favinger, J. L. (1983). Heliobacterium chlorum, an anoxygenic brownish-green photosynthetic bacterium containing a "new" form of bacteriochlorophyll. Arch Microbiol 136, 11-16.
    • (1983) Arch Microbiol , vol.136 , pp. 11-16
    • Gest, H.1    Favinger, J.L.2
  • 16
    • 0029132976 scopus 로고
    • Sequences of nifX, nifW, nifZ, nifB and two ORF in the Frankia nitrogen fixation gene cluster
    • Harriott, O. T., Hosted, T. J. & Benson, D. R. (1995). Sequences of nifX, nifW, nifZ, nifB and two ORF in the Frankia nitrogen fixation gene cluster. Gene 161, 63-67.
    • (1995) Gene , vol.161 , pp. 63-67
    • Harriott, O.T.1    Hosted, T.J.2    Benson, D.R.3
  • 17
    • 1842442575 scopus 로고    scopus 로고
    • The evolutionary history of nitrogen fixation, as assessed by nifD
    • Henson, B. J., Watson, L. E. & Barnum, S. R. (2004). The evolutionary history of nitrogen fixation, as assessed by nifD. J Mol Evol 58, 390-399.
    • (2004) J Mol Evol , vol.58 , pp. 390-399
    • Henson, B.J.1    Watson, L.E.2    Barnum, S.R.3
  • 20
    • 0344289523 scopus 로고    scopus 로고
    • Genetics in nitrogen regulation in Methanococcus maripaludis
    • Kessler, P. S. & Leigh, J. A. (1999). Genetics in nitrogen regulation in Methanococcus maripaludis. Genetics 152, 1343-1351.
    • (1999) Genetics , vol.152 , pp. 1343-1351
    • Kessler, P.S.1    Leigh, J.A.2
  • 21
    • 0031895257 scopus 로고    scopus 로고
    • The nif gene operon of the methanogenic archaeon Methanococcus maripaludis
    • Kessler, P. S., Blank, C. & Leigh, J. A. (1998). The nif gene operon of the methanogenic archaeon Methanococcus maripaludis. J Bacteriol 180, 1504-1511.
    • (1998) J Bacteriol , vol.180 , pp. 1504-1511
    • Kessler, P.S.1    Blank, C.2    Leigh, J.A.3
  • 23
    • 0026734364 scopus 로고
    • Nitrogen fixation and the nitrogen metabolism in heliobacteria
    • Kimble, L. K. & Madigan, M. T. (1992). Nitrogen fixation and the nitrogen metabolism in heliobacteria. Arch Microbiol 158, 155-161.
    • (1992) Arch Microbiol , vol.158 , pp. 155-161
    • Kimble, L.K.1    Madigan, M.T.2
  • 24
    • 0028949531 scopus 로고
    • Heliobacterium modesticaldum, sp. nov., a thermophilic heliobacterium of hot springs and volcanic soils
    • Kimble, L. K., Mandelco, L., Woese, C. R. & Madigan, M. T. (1995). Heliobacterium modesticaldum, sp. nov., a thermophilic heliobacterium of hot springs and volcanic soils. Arch Microbiol 163, 259-267.
    • (1995) Arch Microbiol , vol.163 , pp. 259-267
    • Kimble, L.K.1    Mandelco, L.2    Woese, C.R.3    Madigan, M.T.4
  • 25
    • 0035972815 scopus 로고    scopus 로고
    • Molecular evidence that the capacity for endosporulation is universal among phototrophic heliobacteria
    • Kimble-Long, L. K. & Madigan, M. T. (2001). Molecular evidence that the capacity for endosporulation is universal among phototrophic heliobacteria. FEMS Microbiol Lett 199, 191-195.
    • (2001) FEMS Microbiol Lett , vol.199 , pp. 191-195
    • Kimble-Long, L.K.1    Madigan, M.T.2
  • 26
    • 0034460606 scopus 로고    scopus 로고
    • Characterization of a major cluster of nif, fix, and associated genes in a sugar-cane endophyte, Acetobacter diazotrophicus
    • Lee, S., Reth, A., Meletzus, D., Sevilla, M. & Kennedy, C. (2000). Characterization of a major cluster of nif, fix, and associated genes in a sugar-cane endophyte, Acetobacter diazotrophicus. J Bacteriol 182, 7088-7091.
    • (2000) J Bacteriol , vol.182 , pp. 7088-7091
    • Lee, S.1    Reth, A.2    Meletzus, D.3    Sevilla, M.4    Kennedy, C.5
  • 27
    • 0001832861 scopus 로고
    • The family Heliobacteriaceae
    • 2nd edn, Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. Berlin, Heidelberg & New York: Springer
    • Madigan, M. T. (1992). The family Heliobacteriaceae. In The Prokaryotes, 2nd edn, pp. 1981-1992. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. Berlin, Heidelberg & New York: Springer.
    • (1992) The Prokaryotes , pp. 1981-1992
    • Madigan, M.T.1
  • 28
    • 0013326834 scopus 로고    scopus 로고
    • Family VI. "Heliobacteriaceae" Beer-Romero and Gest 1987, 113
    • 2nd edn, Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer
    • Madigan, M. T. (2001). Family VI. "Heliobacteriaceae" Beer-Romero and Gest 1987, 113. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 625-626. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 625-626
    • Madigan, M.T.1
  • 30
    • 0035656384 scopus 로고    scopus 로고
    • Isolation and characterization of a novel As(V)-reducing bacterium: Implications for arsenic mobilization and the genus Desulfitobacterium
    • Niggemyer, A., Spring, S., Stackebrandt, E. & Rosenzweig, R. F. (2001). Isolation and characterization of a novel As(V)-reducing bacterium: implications for arsenic mobilization and the genus Desulfitobacterium. Appl Environ Microbiol 67, 5568-5580.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5568-5580
    • Niggemyer, A.1    Spring, S.2    Stackebrandt, E.3    Rosenzweig, R.F.4
  • 31
    • 0034176532 scopus 로고    scopus 로고
    • PII signal transduction proteins
    • Ninfa, A. J. & Atkinson, M. R. (2000). PII signal transduction proteins. Trends Microbiol 8, 172-179.
    • (2000) Trends Microbiol , vol.8 , pp. 172-179
    • Ninfa, A.J.1    Atkinson, M.R.2
  • 32
    • 0032755033 scopus 로고    scopus 로고
    • Culture-independent characterization of a gene responsible for nitrogen fixation in the symbiotic microbial community in the gut of the termite Neotermes koshunensis
    • Noda, S., Ohkuma, M., Usami, R., Horikoshi, K. & Kudo, T. (1999). Culture-independent characterization of a gene responsible for nitrogen fixation in the symbiotic microbial community in the gut of the termite Neotermes koshunensis. Appl Environ Microbiol 65, 4935-4942.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4935-4942
    • Noda, S.1    Ohkuma, M.2    Usami, R.3    Horikoshi, K.4    Kudo, T.5
  • 33
    • 0023224890 scopus 로고
    • Nucleotide sequence and functional analysis of the two nifH copies of Rhizobium ORS571
    • Norel, F. & Elmerich, C. (1987). Nucleotide sequence and functional analysis of the two nifH copies of Rhizobium ORS571. J Gen Microbiol 133, 1563-1576.
    • (1987) J Gen Microbiol , vol.133 , pp. 1563-1576
    • Norel, F.1    Elmerich, C.2
  • 34
    • 0019253694 scopus 로고
    • Translational coupling during expression of the tryptophan operon of Escherichia coli
    • Oppenheim, D. S. & Yanofsky, C. (1980). Translational coupling during expression of the tryptophan operon of Escherichia coli. Genetics 95, 785-795.
    • (1980) Genetics , vol.95 , pp. 785-795
    • Oppenheim, D.S.1    Yanofsky, C.2
  • 35
    • 0029967323 scopus 로고    scopus 로고
    • Heliophilum fasciatum gen. nov. sp. nov. and Heliobacterium gestii sp. nov.: Endospore-forming heliobacteria from rice field soils
    • Ormerod, J. G., Kimble, L. K., Nesbakken, T., Torgersen, Y. A., Woese, C. R. & Madigan, M. T. (1996). Heliophilum fasciatum gen. nov. sp. nov. and Heliobacterium gestii sp. nov.: endospore-forming heliobacteria from rice field soils. Arch Microbiol 165, 226-234.
    • (1996) Arch Microbiol , vol.165 , pp. 226-234
    • Ormerod, J.G.1    Kimble, L.K.2    Nesbakken, T.3    Torgersen, Y.A.4    Woese, C.R.5    Madigan, M.T.6
  • 36
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 37
    • 0029853148 scopus 로고    scopus 로고
    • WWW-query: An on-line retrieval system for biological sequence banks
    • Perrière, G. & Gouy, M. (1996). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 41
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74, 5463-5467.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 42
    • 0025776672 scopus 로고
    • Nucleotide sequence of nifH regions from Methanobacterium ivanovii and Methanosarcina barkeri 227 and characterization of glnB-like genes
    • Sibold, L., Henriquet, M., Possot, O. & Aubert, J. P. (1991). Nucleotide sequence of nifH regions from Methanobacterium ivanovii and Methanosarcina barkeri 227 and characterization of glnB-like genes. Res Microbiol 142, 5-12.
    • (1991) Res Microbiol , vol.142 , pp. 5-12
    • Sibold, L.1    Henriquet, M.2    Possot, O.3    Aubert, J.P.4
  • 43
    • 0030783196 scopus 로고    scopus 로고
    • Characterization of new heliobacteria and their habitats
    • Stevenson, A. K., Kimble, L. K. & Madigan, M. T. (1997). Characterization of new heliobacteria and their habitats. Photosynth Res 53, 1-12.
    • (1997) Photosynth Res , vol.53 , pp. 1-12
    • Stevenson, A.K.1    Kimble, L.K.2    Madigan, M.T.3
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 0027509458 scopus 로고
    • Nitrogen fixation by the thermophilic green sulfur bacterium Chlorobium tepidum
    • Wahlund, T. M. & Madigan, M. T. (1993). Nitrogen fixation by the thermophilic green sulfur bacterium Chlorobium tepidum. J Bacteriol 175, 474-478.
    • (1993) J Bacteriol , vol.175 , pp. 474-478
    • Wahlund, T.M.1    Madigan, M.T.2
  • 46
    • 0001975986 scopus 로고
    • Phylogenetic classification of nitrogen-fixing organisms
    • Edited by G. Stacey, R. H. Burris & H. J. Evans. New York: Chapman & Hall
    • Young, J. P. W. (1992). Phylogenetic classification of nitrogen-fixing organisms. In Biological Nitrogen Fixation, pp. 43-86. Edited by G. Stacey, R. H. Burris & H. J. Evans. New York: Chapman & Hall.
    • (1992) Biological Nitrogen Fixation , pp. 43-86
    • Young, J.P.W.1
  • 47
    • 0038234799 scopus 로고    scopus 로고
    • Nitrogenase gene diversity and microbial community structure: A cross-system comparison
    • Zehr, J. P., Jenkins, B. D., Short, S. M. & Steward, G. F. (2003). Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5, 539-554.
    • (2003) Environ Microbiol , vol.5 , pp. 539-554
    • Zehr, J.P.1    Jenkins, B.D.2    Short, S.M.3    Steward, G.F.4


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