Gene structure and expression pattern analysis of three monodehydroascorbate reductase (Mdhar) genes in Physcomitrella patens: Implications for the evolution of the MDHAR family in plants

Plant Molecular Biology

Volumn 60, Issue 2, 2006, Pages 259-275

  Lunde, Christina ^b   Baumann, Ute ^a   Shirley, Neil J ^a   Drew, Damian P ^a   Fincher, Geoffrey B ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Abiotic stress; Abscisic acid; Alternative splicing; Ascorbate; Phylogenetic; Reactive oxygen species

Indexed keywords

OXYGEN; PLANTS (BOTANY); SODIUM CHLORIDE; STRESSES;

ABIOTIC STRESS; ABSCISIC ACID; ALTERNATIVE SPLICING; ASCORBATE; PHYLOGENETIC; REACTIVE OXYGEN SPECIES;

GENES;

MONODEHYDROASCORBATE REDUCTASE; OXIDOREDUCTASE; PLANT DNA;

AMINO ACID SEQUENCE; ARTICLE; BRYOPSIDA; CHEMISTRY; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROMOTER REGION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BASE SEQUENCE; BRYOPSIDA; DNA, PLANT; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; NADH, NADPH OXIDOREDUCTASES; PHYLOGENY; PROMOTER REGIONS (GENETICS); SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID;

GENES; OXYGEN; PLANTS; SODIUM CHLORIDE; STRESSES;

BRYOPHYTA; BRYOPHYTES; EMBRYOPHYTA; PHYSCOMITRELLA; PHYSCOMITRELLA PATENS; TRACHEOPHYTA;

EID: 31044444111     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-005-3881-8     Document Type: Article

References (53)

1. O. Arrigoni S. Dipierro G. Borraccino 1981 Ascorbate free-radical reductase, a key enzyme of the ascorbic-acid system FEBS lett. 125 242 244
2. O. Arrigoni D.M.C. Tullio 2002 Ascorbic acid: much more than just an antioxidant Biochim. Biophys. Acta 1569 1 9
3. K. Asada 1999 The water-water cycle in chloroplasts: Scavenging of active oxygens and dissipation of excess photons Annu. Rev. Plant Physiol. Plant Mol. Biol. 50 601 639
4. N.W. Ashton D.J. Cove 1977 Isolation and preliminary characterization of auxotrophic and analog resistant mutants of moss Physcomitrella patens Mol. Gen. Genet. 154 87 95
5. N.W. Ashton N.H. Grimsley D.J. Cove 1979 Analysis of gametophytic development in the moss Physcomitrella patens using auxin and cytokinin resistant mutants Planta 144 427 435
6. K.H. Baek D.Z. Skinner 2003 Alteration of antioxidant enzyme gene expression during cold acclimation of near-isogenic wheat lines Plant Sci. 165 1221 1227
7. A. Bérczi I.M. Møller 1998 NADH-monodehydroascorbate oxidoreductase is one of the redox enzymes in spinach leaf plasma membranes Plant Physiol. 116 1029 1036
8. W.J. Bruno N.D. Socci A.L. Halpern 2000 Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction Mol. Biol. Evol. 17 189 197
9. R.A. Burton N.J. Shirley B.J. King A.J. Harvey G.B. Fincher 2004 The CesA gene family of barley. Quantitative analysis of transcripts reveals two groups of co-expressed genes Plant Physiol. 134 224 236
10. R. Chenna H. Sugawara T. Koike R. Lopez T.J. Gibson D.G. Higgins J.D. Thompson 2003 Multiple sequence alignment with the Clustal series of programs Nucleic Acids Res. 31 3497 3500
11. O. Chew J. Whelan A.H. Millar 2003 Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants J. Biol. Chem. 278 46869 46877
12. D.A. Dalton L. Langeberg M. Robbins 1992 Purification and characterization of monodehydroascorbate reductase from soybean root-nodules Arch. Biochem. Biophys. 292 281 286
13. D.A. Dalton L.M. Baird L. Langeberg C.Y. Taugher W.R. Anyan C.P. Vance G. Sarath 1993 Subcellular-localization of oxygen defense enzymes in soybean (glycine-max [l] merr) root-nodules Plant Physiol. 102 481 489
14. S. Davletova L. Rizhsky H.J. Liang S.Q. Zhong D.J. Oliver J. Coutu V. Shulaev K. Schlauch R. Mittler 2005 Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis Plant Cell 17 268 281
15. W. Frank D. Ratnadewi R. Reski 2005 Physcomitrella patens is highly tolerant against drought, salt and osmotic stress Planta 220 384 394
16. J.A. Hernandez A.B. Aguilar B. Portillo E. Lopez-Gomez J.M. Beneyto M.F. Garcia-Legaz 2003 The effect of calcium on the antioxidant enzymes from salt-treated loquat and anger plants Funct. Plant Biol. 30 1127 1137
17. K. Higo Y. Ugawa M. Iwamoto T. Korenaga 1999 Plant cis-acting regulatory DNA elements (PLACE) database Nucleic Acid Res. 27 297 300
18. M.A. Hossain Y. Nakano K. Asada 1984 Monodehydroascorbate reductase in spinach-chloroplasts and its participation in regeneration of ascorbate for scavenging hydrogen-peroxide Plant Cell Physiol. 25 385 395
19. M.A. Hossain K. Asada 1985 Monodehydroascorbate reductase from cucumber is a flavin adenine-dinucleotide enzyme J. Biol. Chem. 260 2920 2926
20. R. Kawaguchi J. Bailey-Serres 2005 mRNA sequence features that contribute to translational regulation in Arabidopsis Nucleic Acids Res. 33 955 965
21. P. Kenrick P.R. Crane 1997 The origin and early evolution of plants on land Nature 389 33 39
22. C.D. Knight A. Sehgal K. Atwal J.C. Wallace D.J. Cove D. Coates R.S. Quatrano S. Bahadur P.G. Stockley A.C. Cuming 1995 Molecular responses to abscisic-acid and stress are conserved between moss and cereals Plant Cell 7 499 506
23. D. Lang J. Eisinger R. Reski S. Rensing 2005 Representation and high-quality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism among mosses Plant Biol. 7 238 250
24. D.S. Leonardis D.G. Lorenzo G. Borraccino S. Dipierro 1995 A specific ascorbate free-radical reductase isozyme participates in the regeneration of ascorbate for scavenging toxic oxygen species in potato-tuber mitochondria Plant Physiol. 109 847 851
25. M. Lescot P. Déhais G. Thijs K. Marchal Y. Moreau Y. van Peer P. Rouzé S. Rombauts 2002 PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Nucleic Acids Res. 30 325 327
26. M. Leterrier F.J. Corpas J.B. Barroso L.M. Sandalio L.A. del Rio 2005 Peroxisomal monodehydroascorbate reductase. Genomic clone characterization and functional analysis under environmental stress conditions Plant Physiol. 138 2111 2123
27. C.S. Lisenbee M.J. Lingard R.N. Trelease 2005 Arabidopsis peroxisomes possess functionally redundant membrane and matrix isoforms of monodehydroascorbate reductase Plant J 43 900 914
28. R. Mittler S. Vanderauwera M. Gollery F. van Breusegem 2004 Reactive oxygen gene network of plants Trends Plant Sci. 9 490 498
29. V. Mittova M. Volokita M. Guy M. Tal 2000 Activities of SOD and the ascorbate-glutathione cycle enzymes in subcellular compartments in leaves and roots of the cultivated tomato and its wild salt-tolerant relative Lycopersicon pennellii Physiol. Plant 110 42 51
30. C. Miyake K. Asada 1994 Ferredoxin-dependent photoreduction of the monodehydroascorbate radical in spinach thylakoids Plant Cell Physiol. 35 539 549
31. Molina, C. and Grotewold, E. 2005. Genome wide analysis of Arabidopsis core promoters BMC Genomics 6: doi:10.1186/1471-2164-6-25
32. S.S. Murthy B.A. Zilinskas 1994 Molecular-cloning and characterization of a cDNA-encoding pea monodehydroascorbate reductase J. Biol. Chem. 269 31129 31133
33. T. Nishiyama T. Fujita T. Shin-I M. Seki H. Nishide I. Uchiyama A. Kamiya P. Carninci Y. Hayashizaki K. Shinozaki Y. Kohara M. Hasebe 2003 Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution Proc. Natl. Acad. Sci. USA 100 8007 8012
34. K. Obara K. Sumi H. Fukuda 2002 The use of multiple transcription starts causes the dual targeting of Arabidopsis putative monodehydroascorbate reductase to both mitochondria and chloroplasts Plant Cell Physiol. 43 697 705
35. K. Obara H. Fukuda 2004 Alternative splicing of rice monodehydroascorbate reductase (MDAR) and its dual-targeting to mitochondria (Mt) and plastids (Pl) Plant Cell Physiol. 45 S167 S167
36. Z.N. Ozturk V. Talame M. Deyholos C.B. Michalowski D.W. Galbraith N. Gozukirmizi R. Tuberosa H.J. Bohnert 2002 Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley Plant Mol. Biol. 48 551 573
37. R.D.M. Page 1996 TreeView: an application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 12 357 358
38. A. Polle 2001 Dissecting the superoxide dismutase-ascorbate-glutathione- pathway in chloroplasts by metabolic modeling Computer simulations as a step towards flux analysis Plant Physiol. 126 445 462
39. L. Rizhsky H.J. Liang R. Mittler 2002 The combined effect of drought stress and heat shock on gene expression in tobacco Plant Physiol. 130 1143 1151
40. S. Sano C. Miyake B. Mikami K. Asada 1995 Molecular characterization of monodehydroascorbate radical reductase from cucumber highly expressed in escherichia-coli J Biol Chem 270 21354 21361
41. S. Sano S. Tao Y. Endo T. Inaba M.A. Hossain C. Miyake M. Matsuo H. Aoki K. Asada K. Saito 2005 Purification and cDNA cloning of chloroplastic monodehydroascorbate reductase from spinach Biosci. Biotechnol. Biochem. 69 762 772
42. K. Schlink R. Reski 2002 Preparing high-quality DNA from moss Plant Mol. Biol. Rep. 20 423a 423f
43. H.A. Schmidt K. Strimmer M. Vingron A. von Haeseler 2002 TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing Bioinformatics 18 502 504
44. Q.X.J. Shen J.A. Casaretto P. Zhang T.H.D. Ho 2004 Functional definition of ABA-response complexes: the promoter units necessary and sufficient for ABA induction of gene expression in barley (Hordeum vulgare L.) Plant Mol. Biol. 54 111 124
45. P.D. Siebert A. Chenchik D.E. Kellogg K.A. Lukyanov S.A. Lukyanov 1995 An improved PCR method for walking in uncloned genomic DNA Nucleic Acids Res. 23 1087 1088
46. T. Takeda T. Ishikawa S. Shigeoka 1997 Metabolism of hydrogen peroxide by the scavenging system in Chlamydomonas reinhardtii Physiol. Plant 99 49 55
47. K. Tanaka S. Takio I. Yamamoto T. Satoh 1998 Characterization of a cDNA encoding CuZn-superoxide dismutase from the liverwort Marchantia paleacea var diptera Plant Cell Physiol. 39 235 240
48. F.K. Teixeira L. Menezes-Benavente R. Margis M. Margis-Pinheiro 2004 Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: Inferences from the rice genome J. Mol. Evol. 59 761 770
49. S. Veerassamy A. Smith E.R.M. Tillier 2003 A transition probability model for amino acid substitutions from blocks J. Comput. Biol. 10 997 1010
50. K. Yamaguchi-Shinozaki K. Shinozaki 2005 Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters Trends Plant Sci. 10 88 94
51. H.S. Yoon H. Lee I.A. Lee K.Y. Kim J.K. Jo 2004 Molecular cloning of the monodehydroascorbate reductase gene from Brassica campestris and analysis of its mRNA level in response to oxidative stress Biochim. Biophys. Acta 1658 181 186
52. J.K. Zhu 2002 Salt and drought stress signal transduction in plants Annu. Rev. Plant Biol. 53 247 273
53. M. Zuker 2003 Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 3406 3415