메뉴 건너뛰기




Volumn 15, Issue 4, 2005, Pages 303-309

Hairpin ribozyme-catalyzed ligation in water-alcohol solutions

Author keywords

[No Author keywords available]

Indexed keywords

2 PROPANOL; ALCOHOL; METAL ION; METHANOL; RIBOZYME; RNA; WATER;

EID: 30844446301     PISSN: 15454576     EISSN: None     Source Type: Journal    
DOI: 10.1089/oli.2005.15.303     Document Type: Article
Times cited : (6)

References (37)
  • 1
    • 0022909276 scopus 로고
    • Effect of ethanol on the thermal stability of tRNA molecules
    • BENEVENTI, S., and ONORI, G. (1986). Effect of ethanol on the thermal stability of tRNA molecules. Biophys. Chem. 25, 181-190.
    • (1986) Biophys. Chem. , vol.25 , pp. 181-190
    • Beneventi, S.1    Onori, G.2
  • 2
    • 0035027003 scopus 로고    scopus 로고
    • RNA is all you need
    • BURKE, J.M. (2001). RNA is all you need. Nat. Struct. Biol. 8, 382-384.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 382-384
    • Burke, J.M.1
  • 4
    • 0022504693 scopus 로고
    • Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA
    • BUZAYAN, J.M., GERLACH, W.L., and BRUENING, G. (1986a). Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA. Nature 323, 349-353.
    • (1986) Nature , vol.323 , pp. 349-353
    • Buzayan, J.M.1    Gerlach, W.L.2    Bruening, G.3
  • 5
    • 0023055382 scopus 로고
    • Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA
    • BUZAYAN, J.M., HAMPEL, A., and BRUENING, G. (1986b). Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA. Nucleic Acids Res. 14, 9729-9743.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 9729-9743
    • Buzayan, J.M.1    Hampel, A.2    Bruening, G.3
  • 6
    • 0029008765 scopus 로고
    • Increase of satellite tobacco ringspot virus RNA initiated by inoculating circular RNA
    • BUZAYAN, J.M., VAN TOL, H., ZALLOUA, P.A., and BRUENING, G. (1995). Increase of satellite tobacco ringspot virus RNA initiated by inoculating circular RNA. Virology 208, 832-837.
    • (1995) Virology , vol.208 , pp. 832-837
    • Buzayan, J.M.1    Van Tol, H.2    Zalloua, P.A.3    Bruening, G.4
  • 7
    • 0031583861 scopus 로고    scopus 로고
    • Formation of circular satellite tobacco ringspot virus RNA in protoplasts transiently expressing the linear RNA
    • CHAY, C.A., GUAN, X., and BRUENING, G. (1997). Formation of circular satellite tobacco ringspot virus RNA in protoplasts transiently expressing the linear RNA. Virology 239, 413-425.
    • (1997) Virology , vol.239 , pp. 413-425
    • Chay, C.A.1    Guan, X.2    Bruening, G.3
  • 8
    • 0027473887 scopus 로고
    • Ionic requirements for RNA binding, cleavage, and ligation by the hairpin ribozyme
    • CHOWRIRA, B.M., BERZAL-HERRANZ, A., and BURKE, J.M. (1993). Ionic requirements for RNA binding, cleavage, and ligation by the hairpin ribozyme. Biochemistry 32, 1088-1095.
    • (1993) Biochemistry , vol.32 , pp. 1088-1095
    • Chowrira, B.M.1    Berzal-Herranz, A.2    Burke, J.M.3
  • 9
    • 0030865308 scopus 로고    scopus 로고
    • Kinetics of hairpin ribozyme cleavage in yeast
    • DONAHUE, C.P., and FEDOR, M.J. (1997). Kinetics of hairpin ribozyme cleavage in yeast. RNA 3, 961-973.
    • (1997) RNA , vol.3 , pp. 961-973
    • Donahue, C.P.1    Fedor, M.J.2
  • 10
    • 0032534533 scopus 로고    scopus 로고
    • Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions
    • EARNSHAW, D.J., and GAIT, M. (1998). Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions. Nucleic Acids Res. 26, 5551-5561.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5551-5561
    • Earnshaw, D.J.1    Gait, M.2
  • 11
    • 0030920270 scopus 로고    scopus 로고
    • Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations
    • ESTEBAN, J.A., BANERJEE, A.R., and BURKE, J.M. (1997). Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations. J. Biol. Chem. 272, 13629-13639.
    • (1997) J. Biol. Chem. , vol.272 , pp. 13629-13639
    • Esteban, J.A.1    Banerjee, A.R.2    Burke, J.M.3
  • 12
    • 0034708334 scopus 로고    scopus 로고
    • Structure and function of the hairpin ribozyme
    • FEDOR, M. (2000). Structure and function of the hairpin ribozyme. J. Mol. Biol. 297, 269-291.
    • (2000) J. Mol. Biol. , vol.297 , pp. 269-291
    • Fedor, M.1
  • 13
    • 0031696583 scopus 로고    scopus 로고
    • Cryoenzymology of the hammerhead ribozyme
    • FEIG, A.L., AMMONS, G.E., and UHLENBECK, O.C. (1998). Cryoenzymology of the hammerhead ribozyme. RNA 4, 1251-1258.
    • (1998) RNA , vol.4 , pp. 1251-1258
    • Feig, A.L.1    Ammons, G.E.2    Uhlenbeck, O.C.3
  • 14
    • 0027310473 scopus 로고
    • Catalytically active geometry in the reversible circularization of "minimonomer" RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA
    • FELDSTEIN, P.A., and BRUENING, G. (1993). Catalytically active geometry in the reversible circularization of "minimonomer" RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA. Nucleic Acids Res. 21, 1991-1998.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1991-1998
    • Feldstein, P.A.1    Bruening, G.2
  • 15
    • 0018678581 scopus 로고
    • Cryoenzymology: The study of enzyme catalysis at subzero temperatures
    • FINK, A.L., and GEEVES, M.A. (1979). Cryoenzymology: The study of enzyme catalysis at subzero temperatures. Methods Enzymol. 63, 336-370.
    • (1979) Methods Enzymol. , vol.63 , pp. 336-370
    • Fink, A.L.1    Geeves, M.A.2
  • 16
    • 0021870425 scopus 로고
    • Ion dependence of the Bacillus subtilis RNase P reaction
    • GARDINER, K.J., MARSH, T.L., and PACE, N.R. (1985). Ion dependence of the Bacillus subtilis RNase P reaction. J. Biol. Chem. 260, 5415-5419.
    • (1985) J. Biol. Chem. , vol.260 , pp. 5415-5419
    • Gardiner, K.J.1    Marsh, T.L.2    Pace, N.R.3
  • 17
    • 0031961687 scopus 로고    scopus 로고
    • The hairpin ribozyme: Discovery, two-dimensional model, and development for gene therapy
    • HAMPEL, A. (1998). The hairpin ribozyme: Discovery, two-dimensional model, and development for gene therapy. Prog. Nucleic Acid Res. Mol. Biol. 58, 1-39.
    • (1998) Prog. Nucleic Acid Res. Mol. Biol. , vol.58 , pp. 1-39
    • Hampel, A.1
  • 18
    • 0031194873 scopus 로고    scopus 로고
    • A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage
    • HAMPEL, A., and COWAN, J.A. (1997). A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage. Chem. Biol. 4, 513-517.
    • (1997) Chem. Biol. , vol.4 , pp. 513-517
    • Hampel, A.1    Cowan, J.A.2
  • 19
    • 0028657559 scopus 로고
    • Suppression of mutations in the core of the Tetrahymena ribozyme by spermidine, ethanol and by substrate stabilization
    • HANNA, M., and SZOSTAK, J.W. (1994). Suppression of mutations in the core of the Tetrahymena ribozyme by spermidine, ethanol and by substrate stabilization. Nucleic Acids Res. 22, 5326-5331.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5326-5331
    • Hanna, M.1    Szostak, J.W.2
  • 20
    • 0028837570 scopus 로고
    • Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozyme
    • HEGG, L.A., and FEDOR, M.J. (1995). Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozyme. Biochemistry 34, 15813-15828.
    • (1995) Biochemistry , vol.34 , pp. 15813-15828
    • Hegg, L.A.1    Fedor, M.J.2
  • 22
    • 0032765392 scopus 로고    scopus 로고
    • Use of ribozymes to inhibit gene expression
    • KRUGER, M., BEGER, C., and WONG-STAAL, F. (1999). Use of ribozymes to inhibit gene expression. Methods Enzymol. 306, 207-225.
    • (1999) Methods Enzymol. , vol.306 , pp. 207-225
    • Kruger, M.1    Beger, C.2    Wong-Staal, F.3
  • 23
    • 0029899865 scopus 로고    scopus 로고
    • Sequence-specific DNA-binding dominated by dehydration
    • LUNDBACK, T., and HARD, T. (1996). Sequence-specific DNA-binding dominated by dehydration. Proc. Natl. Acad. Sci. USA 93, 4754-4759.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 4754-4759
    • Lundback, T.1    Hard, T.2
  • 24
    • 0032192761 scopus 로고    scopus 로고
    • The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone
    • MURRAY, J.B., SEYHAN, A.A., WALTER, N.G., BURKE, J.M., and SCOTT, W.G. (1998). The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone. Chem. Biol. 5, 587-595.
    • (1998) Chem. Biol. , vol.5 , pp. 587-595
    • Murray, J.B.1    Seyhan, A.A.2    Walter, N.G.3    Burke, J.M.4    Scott, W.G.5
  • 25
    • 0033525467 scopus 로고    scopus 로고
    • The internal equilibrium of the hairpin ribozyme: Temperature, ion and pH effects
    • NESBITT, S.M., ERLACHER, H.A., and FEDOR, M.J. (1999). The internal equilibrium of the hairpin ribozyme: Temperature, ion and pH effects. J. Mol. Biol. 286, 1009-1024.
    • (1999) J. Mol. Biol. , vol.286 , pp. 1009-1024
    • Nesbitt, S.M.1    Erlacher, H.A.2    Fedor, M.J.3
  • 26
    • 0031215134 scopus 로고    scopus 로고
    • An unusual pH-independent and metal ion-independent mechanism for hairpin ribozyme catalysis
    • NESBITT, S.M., HEGG, L.A., and FEDOR, M.J. (1997). An unusual pH-independent and metal ion-independent mechanism for hairpin ribozyme catalysis. Chem. Biol. 4, 619-630.
    • (1997) Chem. Biol. , vol.4 , pp. 619-630
    • Nesbitt, S.M.1    Hegg, L.A.2    Fedor, M.J.3
  • 28
    • 0001533502 scopus 로고
    • Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: Hydration forces between parallel DNA double helices
    • RAU, D.C., LE, B., and PARSEGIAN, V.A. (1984). Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: Hydration forces between parallel DNA double helices. Proc. Natl. Acad. Sci. USA 81, 2621-2625.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 2621-2625
    • Rau, D.C.1    Le, B.2    Parsegian, V.A.3
  • 29
    • 0035848837 scopus 로고    scopus 로고
    • Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
    • RUPERT, P.B., and FERRE-D'AMARE, A.R. (2001). Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature (Lond.) 410, 780-786.
    • (2001) Nature (Lond.) , vol.410 , pp. 780-786
    • Rupert, P.B.1    Ferre-D'Amare, A.R.2
  • 30
    • 0033621994 scopus 로고    scopus 로고
    • 2+-independent hairpin ribozyme catalysis in hydrated RNA films
    • 2+-independent hairpin ribozyme catalysis in hydrated RNA films. RNA 6, 189-198.
    • (2000) RNA , vol.6 , pp. 189-198
    • Seyhan, A.A.1    Burke, J.M.2
  • 31
    • 0035848841 scopus 로고    scopus 로고
    • Biological catalysis. The hairpin's turn
    • STROBEL, S.A., and RYDER, S.P. (2001). Biological catalysis. The hairpin's turn. Nature (Lond.) 410, 761-763.
    • (2001) Nature (Lond.) , vol.410 , pp. 761-763
    • Strobel, S.A.1    Ryder, S.P.2
  • 32
    • 0025335881 scopus 로고
    • Two autocatalytic processing reactions of a satellite RNA proceed with inversion of configuration
    • VAN TOL, H., BUZAYAN, J.M., FELDSTEIN, P.A., ECKSTEIN, F., and BRUENING, G. (1990). Two autocatalytic processing reactions of a satellite RNA proceed with inversion of configuration. Nucleic Acids Res. 18, 1971-1975.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1971-1975
    • Van Tol, H.1    Buzayan, J.M.2    Feldstein, P.A.3    Eckstein, F.4    Bruening, G.5
  • 33
    • 2442701826 scopus 로고    scopus 로고
    • Ligation activity of fragmented ribozymes in frozen solution: Implications for the RNA world
    • VLASSOV, A.V., JOHNSTON, B.H., LANDWEBER, L.F., and KAZAKOV, S.A. (2004). Ligation activity of fragmented ribozymes in frozen solution: Implications for the RNA world. Nucleic Acids Res. 32, 2966-2974.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 2966-2974
    • Vlassov, A.V.1    Johnston, B.H.2    Landweber, L.F.3    Kazakov, S.A.4
  • 34
    • 24744440361 scopus 로고    scopus 로고
    • The RNA world on ice: A new scenario for the emergence of RNA information
    • VLASSOV, A.V., KAZAKOV, S.A., JOHNSTON, B.H., and LANDWEBER, L.F. (2005). The RNA world on ice: A new scenario for the emergence of RNA information. J. Mol. Evol. 61, 264-273.
    • (2005) J. Mol. Evol. , vol.61 , pp. 264-273
    • Vlassov, A.V.1    Kazakov, S.A.2    Johnston, B.H.3    Landweber, L.F.4
  • 35
    • 0017844572 scopus 로고
    • Discrete length classes of DNA dependent on mode of dehydration
    • VOLLENWEIDER, H.J., JAMES, A., and SZYBALSKI, W. (1978). Discrete length classes of DNA dependent on mode of dehydration. Proc. Natl. Acad. Sci. USA 75, 710-714.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 710-714
    • Vollenweider, H.J.1    James, A.2    Szybalski, W.3
  • 36
    • 0030967825 scopus 로고    scopus 로고
    • Metal ions play a passive role in the hairpin ribozyme catalyzed reaction
    • YOUNG, K.J., GILL, F., and GRASBY, J.A. (1997). Metal ions play a passive role in the hairpin ribozyme catalyzed reaction. Nucleic Acids Res. 25, 3760-3766.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3760-3766
    • Young, K.J.1    Gill, F.2    Grasby, J.A.3
  • 37
    • 0030625617 scopus 로고    scopus 로고
    • Design of hairpin ribozymes for in vitro and cellular applications
    • YU, Q., and BURKE, J.M. (1997). Design of hairpin ribozymes for in vitro and cellular applications. Methods Mol. Biol. 74, 161-169.
    • (1997) Methods Mol. Biol. , vol.74 , pp. 161-169
    • Yu, Q.1    Burke, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.