Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species

Theoretical and Applied Genetics

Volumn 105, Issue 2-3, 2002, Pages 474-478

  Marques, Cris M ^a   Brondani, R P V ^b   Grattapaglia, D ^c   Sederoff, R ^d  

^a RAIZ Instituto de Investigacao da Floresta e Papel   (Portugal)

^b EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^c UNIVERSIDADE CATÓLICA DE BRASÍLIA   (Brazil)

^d NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Eucalyptus; Mapping; QTLs; SSR; Synteny

Indexed keywords

BIOMARKERS; CONSERVATION; PLANTS (BOTANY);

VEGETATIVE PROPAGATION;

GENETIC ENGINEERING;

EMBRYOPHYTA; EUCALYPTUS; EUCALYPTUS GLOBULUS; EUCALYPTUS GRANDIS; EUCALYPTUS TERETICORNIS; EUCALYPTUS UROPHYLLA;

EID: 0036937926     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-0899-z     Document Type: Article

References (36)

1. Beavis WD (1994) The power and deceit of QTL experiments: Lessons from comparative QTL studies. In: Proc Corn and Sorghum Industry Research Conf, American Seed Trade Association, Washington D.C. pp 250-266
2. Brondani RPV, Grattapaglia D (2001) Towards the Construction of a Genus-wide Reference Linkage Map for Eucalyptus Based Exclusively on Highly Informative Microsatellite Markers (in press)
3. Brondani RPV, Brondani C, Tarchini R, Grattapaglia D (1998) Development, characterization and mapping of microsatellite markers in Eucalyptus grandis and E. urophylla. Theor Appl Genet 97:816-827
4. Bucci G, Kubisiak TL, Nance WL, Menozzi P (1997) A population "consensus", partial linkage map of Picea abies Karst. based on RAPD markers. Theor Appl Genet 95:643-654
5. Byrne M, Marquez-Garcia MI, Uren T, Smith DS, Moran GF (1996) Conservation and genetic diversity of microsatellite loci in the genus Eucalyptus. Aust J Bot 44:331-341
6. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch S, Tanksley SD (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251-1274
7. Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR (1997) Development of a microsatellite famework map providing genomewide coverage in rice (Oryza sativa L.). Theor Appl Genet 95:553-567
8. Deynze AE van, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME (1995) Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248:744-754
9. Echt CS, Vendramim GG, Nelson CD, Marquardt P (1999) Microsatellite DNA as shared genetic markers among conifer species. Can J For Res 29:365-371
10. Eldridge K, Davidson J, Hardwood C, van Wyk G (1994) Eucalypt Domestication and Breeding. Oxford University Press, Oxford, UK
11. Erpelding JE, Blake NK, Blake TK, Talbert LE (1996) Transfer of sequence tagged site PCR markers between wheat and barley. Genome 39:802-810
12. Fisher PJ, Richardson TE, Gardner RC (1998) Characteristics of single- and multi-copy microsatellites from Pinus radiata. Theor Appl Genet 96:969-979
13. Goldstein DB, Pollock DD (1997) Lauching microsatellites: A review of mutation processes and methods of phylogenetic inference. J Hered 88:335-342
14. Grandillo S, Tanksley SD (1996) QTL analysis of horticultural traits differentiating the cultivated tomato from the closely related species Lycopersicon pimpinellifolium. Theor Appl Genet 92:935-951
15. Grattapaglia D, Bradshaw HD (1994) Nuclear DNA content of commercially important Eucalyptus species and hybrids. Can J For Res 24:1074-1078
16. Grattapaglia D, Bertolucci FL, Sederoff RR (1995) Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudo-testcross strategy and RAPD markers. Theor Appl Genet 90:933-947
17. Harrington SE, Bligh HFJ, Park WD, Jones CA, McCouch SR (1997) Linkage mapping of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses. Theor Appl Genet 94:564-568
18. Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115
19. Lagercrantz U, Putterill J, Coupland G, Lydiate D (1996) Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time. Plant J 9:13-20
20. Lin Y-R, Schertz KF, Paterson AH (1995) Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics 141:391-411
21. Liu B-H (1997) Statistical Genomics. CRC Press, Boca Raton, Florida
22. Marques CM, Araújo JA, Ferreira JG, Whetten R, O'Malley DM, Liu B-H, Sederoff R (1998) AFLP genetic maps of Eucalyptus globulus and E. tereticornis. Theor Appl Genet 96:727-737
23. Marques CM, Vasquez-Kool J, Carocha VJ, Ferreira JG, O'Malley DM, Liu B-H, Sederoff R (1999) Genetic dissection of vegetative propagation traits in Eucalyptus tereticornis and E. globulus. Theor Appl Genet 99:936-946
24. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
25. Nest MA van der, Steenkamp ET, Wingfield BD, Wingfield MJ (2000) Development of simple sequence repeat (SSR) markers in Eucalyptus from amplified inter-simple sequence repeats (ISSRs). Plant Breed 119:433-436
26. Paterson AH, Damon S, Hewitt JD, Zamir D, Rabinowitch HD, Lincoln SE, Lander ES, Tanksley SD (1991) Mendelian factors underlying quantitative traits in tomato: Comparison across species, generations and environments. Genetics 127:181-197
27. Paterson AH, Lin Y-R, Li Z, Schertz KF, Doebley JF, Pinson SRM, Liu S-C, Stansel JW, Irvine JE (1995) Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269:1714-1718
28. Pereira MG, Lee M (1995) Identification of genomic regions affecting plant height in sorghum and maize. Theor Appl Genet 90:380-388
29. Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1:215-221
30. Provan J, Soranzo N, Wilson NJ, Goldstein DB, Powell W (1999) A low mutation rate for chloroplast microsatellites. Genetics 153:943-947
31. Schlötterer C, Pemberton J (1994) The use of microsatellites for genetic analysis of natural populations. In: Schierwater B, Streit B, Wagner GP, DeSalle R (eds) Molecular Ecology and Evolution: Approaches and Applications. Birkhauser Verlag Basel, Switzerland, pp 203-214
32. Schoot J van der, PospískováM, Vosman B, Smulders MJM (2000) Development and characterization of microsatellite markers in black poplar (Populus nigra L.). Theor Appl Genet 101:317-322
33. n microsatellite loci between Quercus species. Mol Ecol 6:1189-1194
34. Tóth G, Gáspári Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 10:967-981
35. Treuren R van, Kuittinen H, Kärkkäinen K, Baena-Gonzalez E, Savolainen O (1997) Evolution of microsatellites in Arabis petraea and Arabis lyrata, outcrossing relatives of Arabidopsis thaliana. Mol Biol Evol 14:220-229
36. Verhaegen D, Plomion C, Gion J-M, Poitel M, Costa P, Kremer A (1997) Quantitative trait dissection analysis in Eucalyptus using RAPD markers. 1. Detection of QTLs in interspecific hybrid progeny, stability of QTL expression across different ages. Theor Appl Genet 95:597-608