Erratum to "Monitoring Lactobacillus plantarum in grass silages with the aid of 16S rDNA-based quantitative real-time PCR assays". [Systematic and Applied Microbiology 29 (2006) 49-58] (DOI:10.1016/j.syapm.2005.06.001);Monitoring Lactobacillus plantarum in grass silages with the aid of 16S rDNA-based quantitative real-time PCR assays

Systematic and Applied Microbiology

Volumn 29, Issue 1, 2006, Pages 49-58

  Klocke, Michael ^a   Mundt, Kerstin ^a   Idler, Christine ^a   McEniry, Joseph ^b,c   O'Kiely, Padraig ^c   Barth, Susanne ^d  

^a LEIBNIZ INSTITUTE FOR AGRICULTURAL ENGINEERING AND BIOECONOMY ATB   (Germany)

^b UNIVERSITY COLLEGE DUBLIN   (Ireland)

^c GRANGE RESEARCH CENTRE   (Ireland)

^d TEAGASC   (Ireland)

Author keywords

16S rDNA; 5 Exonuclease assay; Lactobacillus plantarum; Quantitative real time PCR; Silage; Silage additive; Starter culture; TaqMan probe

Indexed keywords

CARBOXYLIC ACID; PHOSPHODIESTERASE I;

ARTICLE; ENZYME ASSAY; FORAGE; GRASS; LACTIC ACID BACTERIUM; LACTOBACILLUS PLANTARUM; NONHUMAN; POPULATION DYNAMICS; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); LACTOBACILLUS PLANTARUM;

EID: 30744473244     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2006.01.015     Document Type: Erratum

References (36)

1. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
2. Applied Biosystems, Creating standard curves with genomic DNA or plasmid DNA templates for use in quantitative PCR, published online at URL: http://www.appliedbiosystems.com/support/tutorials/pdf/quant_pcr.pdf,2003.
3. A.A. Bhagwat Simultaneous detection of Escherichia coli O157:H7, Listeria monocytogenes and Salmonella strains by real-time PCR Int. J. Food Microbiol. 84 2003 217 224
4. P. Chagnaud, K. Machinis, L.A. Coutte, A. Marecat, and A. Mercenier Rapid PCR-based procedure to identify lactic acid bacteria: application to six common Lactobacillus species J. Microbiol. Meth. 44 2001 139 148
5. Z. Cheng, and M.W. Griffiths Rapid detection of Campylobacter jejuni in chicken rinse water by melting-peak analysis of amplicons in real-time polymerase chain reaction J. Food Prot. 66 2003 1343 1352
6. M.D. Collins, U. Rodrigues, C. Ash, M. Aguirre, J.A.E. Farrow, A. Martinez-Murcia, B.A. Phillips, A.M. Williams, and S. Wallbanks Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA FEMS Microbiol. Lett. 77 1991 5 12
7. S.M. Cusick, and D.J. O'Sullivan Use of a single, triplicate arbitrarily primed-PCR procedure for molecular fingerprinting of lactic acid bacteria Appl. Environ. Microbiol. 66 2000 2227 2231
8. A. Delaherche, O. Claisse, and A. Lonvaud-Funel Detection and quantification of Brettanomyces bruxellensis and 'ropy' Pediococcus damnosus strains in wine by real-time polymerase chain reaction J. Appl. Microbiol. 97 2004 910 915
9. H.M. Dionisi, G. Harms, A.C. Layton, I.R. Gregory, J. Parker, S.A. Hawkins, K.G. Robinson, and G.S. Sayler Power analysis for real-time PCR quantification of genes in activated sludge and analysis of the variability introduced by DNA extraction Appl. Environ. Microbiol. 69 2003 6597 6604
10. S. Ennahar, Y.M. Cai, and Y. Fujita Phylogenetic diversity of lactic acid bacteria associated with paddy rice silage as determined by 16S ribosomal DNA analysis Appl. Environ. Microbiol. 69 2003 444 451
11. O. Greiner, P.J.R. Day, P.P. Bosshard, F. Imeri, M. Altwegg, and D. Nadal Quantitative detection of Streptococcus pneumonie in nasopharyngal secretions by real-time PCR J. Clin. Microbiol. 39 2001 3129 3134
12. C. Hupfer, J. Mayer, H. Hotzel, K. Sachse, and K.-H. Engel The effect of ensiling on PCR-based detection of genetically modified Bt maize Eur. Food Res. Technol. 209 1999 301 304
13. C. Idler Ernte, Konservierung und Erstverarbeitung von Hanf aus einer Feuchtgutlinie, Forschungsberichte ATB 2000/03 2000 Institute of Agricultural Engineering Bornim Potsdam
14. C. Idler, K. Richter, R. Partzsch, G. Neubert, and F. Heber Homemade starter cultures for silage Landtechnik 57 2002 261 263
15. M.L. Johansson, M. Quednau, G. Molin, and S. Ahrne Randomly amplified polymorphic DNA (RAPD) for rapid typing of Lactobacillus plantarum strains Lett. Appl. Microbiol. 21 1995 155 159
16. M. Klocke, A. Knapik, and K. Mundt Den Bakterien auf der Spur: Marker-gestützte Detektion von Starterkulturen für die Grünfutter-Silierung Agrartech. Forsch. 10 2004 98 104
17. M. Klocke, and K. Mundt Development of a 16S rDNA-targeted PCR assay for monitoring of Lactobacillus plantarum and Lact. rhamnosus during co-cultivation for production of inoculants for silages Lett. Appl. Microbiol. 39 2004 267 273
18. L. Kung, M.R. Stokes, and C.J. Lin Silage additives D.R. Buxton R.E. Muck J.H. Harrision Silage Science and Technology 2003 American Society of Agronomy Madison 305 360
19. S.H. Lyons, A.L. Griffen, and E.J. Leys Quantitative real-time PCR for Porphyromonas gingivalis and total bacteria J. Clin. Microbiol. 38 2000 2362 2365
20. P. McDonald, A.R. Henderson, and S.J.E. Heron The Biochemistry of Silage second ed. 1991 Chalcombe Publications Lincoln
21. A. Nigatu, S. Ahrne, and G. Molin Randomly amplified polymorphic DNA (RAPD) profiles for the distinction of Lactobacillus species Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 79 2001 1 6
22. M. Nour 16S-23S and 23S-5S intergenic spacer regions of lactobacilli, nucleotide sequence, secondary structure and comparative analysis Res. Microbiol. 149 1998 433 448
23. P. O'Kiely, and R.K. Wilson Comparison of three silo types used to study in-silo processes Ir. J. Agric. Res. 30 1991 53 60
24. A. Pahl, U. Kühlbrandt, K. Brune, M. Röllinghoff, and A. Gessner Quantitative detection of Borrelia burgdorferi by real-time PCR J. Clin. Microbiol. 37 1999 1958 1963
25. G. Pahlow, R.E. Muck, F. Driehus, S.J.W.H. Oude Elferink, and S.F. Spoelstra Microbiology of ensiling D.R. Buxton R.E. Muck J.H. Harrision Silage Science and Technology 2003 American Society of Agronomy Madison 31 93
26. H. Rheims, and E. Stackebrandt Application of nested polymerase chain reaction for the detection of as yet uncultured organisms of the class Actinobacteria in environmental samples Environ. Microbiol. 1 1999 137 143
27. J. Sambrook, and D.W. Russell Molecular Cloning - A Laboratory Manual third ed. 2001 Cold Spring Harbour Laboratory Press Cold Spring Harbour
28. Y.-L. Song, N. Kato, C.-X. Liu, Y. Matsumiya, H. Kato, and K. Watanabe Rapid identification of 11 human intestinal Lactobacillus species by multiplex PCR assays using group- and species-specific primers derived from the 16S-23S rRNA intergenic spacer region and its flanking 23S rRNA FEMS Microbiol. Lett. 187 2000 167 173
29. K. Takai, and K. Horikoshi Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes Appl. Environ. Microbiol. 66 2000 5066 5072
30. G.W. Tannock, A. Tilsala-Timisjarvi, S. Rodtong, J. Ng, K. Munro, and T. Alatossava Identification of Lactobacillus isolates from the gastrointestinal tract, silage, and yoghurt by 16S-23S rRNA gene intergenic spacer region sequence comparisons Appl. Environ. Microbiol. 65 1999 4264 4267
31. A. Tilsala-Timisjarvi, and T. Alatossava Strain-specific identification of probiotic Lactobacillus rhamnosus with randomly amplified polymorphic DNA-derived PCR primers Appl. Environ. Microbiol. 64 1998 4816 4819
32. S.Z. Validov, N.V. Pankova, E.V. Kozlova, N.P. Kuzmin, V.V. Klimenko, and A.M. Boronin Rapid identification of Lactobacillus plantarum by RAPD-PCR Microbiology 67 1998 317 322
33. J.S. Van Kessel, J.S. Karns, and M.L. Perdue Using a portable real-time PCR assay to detect Salmonella in raw milk J. Food Prot. 66 2003 1762 1767
34. Z.G. Weinberg, and R.E. Muck New trends and opportunities in the development and use of inoculants for silage FEMS Microbiol. Rev. 19 1996 53 68
35. A.G. Whiter, and L. Kung The effect of a dry or liquid application of Lactobacillus plantarum MTD1 on the fermentation of alfalfa silage J. Dairy Sci. 84 2001 2195 2202
36. C. Yang, Y. Jiang, K. Huang, C. Zhu, and Y. Yin Application of real-time PCR for quantitative detection of Campylobacter jejuni in poultry, milk and environmental water FEMS Immunol. Med. Microbiol. 38 2003 265 271