Evolutionary differentiation of bimaculatus group anoles based on analyses of mtDNA and microsatellite data

Molecular Phylogenetics and Evolution

Volumn 32, Issue 1, 2004, Pages 1-10

  Stenson, Andrew G ^a   Thorpe, Roger S ^a   Malhotra, Anita ^a  

^a BANGOR UNIVERSITY   (United Kingdom)

Author keywords

Body size evolution; Caribbean biodiversity; Island colonisation; Phylogeny

Indexed keywords

CYTOCHROME B; CYTOCHROME C OXIDASE; DNA; MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ALLELE; ANIMAL; ARTICLE; BODY SIZE; CELL NUCLEUS; CHROMOSOME MAP; CODON; GENE FREQUENCY; GENETICS; GENOTYPE; LIZARD; METABOLISM; MOLECULAR EVOLUTION; PHYLOGENY; POLYMERASE CHAIN REACTION; STATISTICAL MODEL;

ALLELES; ANIMALS; BODY SIZE; CELL NUCLEUS; CHROMOSOME MAPPING; CODON; CYTOCHROMES B; DNA; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; GENE FREQUENCY; GENOTYPE; LIKELIHOOD FUNCTIONS; LIZARDS; MICROSATELLITE REPEATS; PHYLOGENY; POLYMERASE CHAIN REACTION;

ANOLIS; ANOLIS MARMORATUS; ANOLIS OCULATUS; ANOLIS SABANUS; ANOLIS TERRAEALTAE;

EID: 3042825416     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2003.12.008     Document Type: Article

References (57)

1. Avise J.C. Phylogeography. The History and Formation of Species. 2000;Harvard University Press, Cambridge, MA
2. Brookfield J.F.Y. A simple new method for estimating null allele frequency from heterozygote deficiency. Mol. Ecol. 5:1996;453-455
3. Burnell K.L., Hedges S.B. Relationships of West Indian Anolis (Sauria: Iguanidae): an approach using slow-evolving protein loci. Carib. J. Sci. 26(1-2):1990;7-30
4. Butler M.A., Losos J.B. Testing for unequal amounts of evolution in a continuous character on different branches of a phylogenetic tree using linear and squared-change parsimony: an example using Lesser Antillean Anolis lizards. Evolution. 51:1997;1623-1635
5. Censky E.J., Hodge K., Dudley J. Over-water dispersal of lizards due to hurricanes. Nature. 395:1998;556
6. Creer D.A., de Queiroz K., Jackman T.R., Losos J.B., Larson A. Systematics of the Anolis roquet series of the southern Lesser Antilles. J. Herpetol. 35(3):2001;428-441
7. Elliott J.K., Lougheed S.C., Bateman B., McPhee L.K., Boag P.T. Molecular phylogenetic evidence for the evolution of specialization in anemonefishes. Proc. R. Soc. Lond. B. 266:1999;677-685
8. Feldman M.W., Bergman A., Pollock D.D., Goldstein D.B. Microsatellite genetic distances with range constraints: analytical description and problems of estimation. Genetics. 145:1997;207-216
9. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:1981;368-376
10. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791
11. Felsenstein J. PHYLIP (Phylogeny Inference Package), version 3.5c. Zoology Department. 1993;University of Washington, Seattle
12. Giannasi N.C., Thorpe R.S., Malhotra A. A phylogenetic analysis of body size evolution in the Anolis roquet group (Sauria: Iguanidae): character displacement or size assortment? Mol. Ecol. 9:2000;193-202
13. Goldman N., Anderson J.P., Rodrigo A.G. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49(4):2000;652-670
14. Gorman G.C., Atkins L. The zoogeography of Lesser Antillean Anolis lizards - an analysis based upon chromosomes and lactic dehydrogenases. Bull. Mus. Comp.Zool. 138:1969;53-80
15. Gorman G.C., Kim Y.J. Anolis lizards of the eastern Caribbean: a case study in evolution. II. Genetic relationships and genetic variation of the bimaculatus group. Syst. Zool. 19:1976;445-471
16. Hillis D.M., Huelsenbeck J.P. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:1992;189-195
17. Jackman T.R., Larson A., de Querioz K., Losos J.B. Phylogenetic relationships and tempo of early diversification in Anolis lizards. Syst. Biol. 48:1999;254-285
18. Kluge A.G. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38:1989;7-25
19. Kocher T.D., Thomas W.K., Meyer A., Edwards S.V., Paabo S., Villablanca F.X., Wilson A.C. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA. 86:1989;6196-6200
20. Kumar S., Tamura K., Nei M. MEGA: Molecular Evolutionary Genetics Analysis. Version 1.0. 1993;Pennsylvania State University, University Park, Pennsylvania
21. Lazell J.D. The anoles (Sauria: Iguanidae) of the Lesser Antilles. Bull. Mus. Comp. Zool. 143:1972;1-115
22. Lenk P., Wink M. A RNA-RNA heteroduplex cleavage analysis to detect rare mutations in populations. Mol. Ecol. 6:1997;687-690
23. Losos J.B. A phylogenetic analysis of character displacement in Caribbean Anolis lizards. Evolution. 44:1990;558-569
24. Malhotra A., Thorpe R.S. Microgeographic variation in Anolis oculatus on the island of Dominica, West Indies. J. Evol. Biol. 4:1991;321-335
25. Malhotra A., Thorpe R.S. Size and shape variation in a Lesser Antillean anole, Anolis oculatus (Sauria: Iguanidae) in relation to habitat. Biol. J. Linn. Soc. 60:1997;53-72
26. Malhotra A., Thorpe R.S. The dynamics of natural selection and vicariance in the Dominican anole: patterns of within-island molecular and morphological divergence. Evolution. 54(1):2000;245-258
27. Miles D.B., Dunham A.E. The paradox of the phylogeny: character displacement of analyses of body size in island Anolis. Evolution. 50:1996;594-603
28. Minch E., Ruiz-Linares A., Goldstein D., Feldman M., Cavalli-Sforza L.L. MICROSAT (version 1.5): a computer program for calculating various statistics on microsatellite allele data. 1996;Stanford University Medical Centre
29. Moritz C., Schneider C.J., Wake D.B. Evolutionary relationships within the Ensatina eschscholtzii complex confirms the ring species interpretation. Syst. Biol. 41:1992;273-291
30. Nei M. Genetic distances between populations. Am. Nat. 106:1972;283-292
31. Palumbi S., Martin A., Romano S., McMillan W.O., Stice L., Grabowski G. "The Simple Fool's Guide to PCR version 2.0." Department of Zoology and Kewalo Marine Laboratory. 1991;University of Hawaii, Honolulu
32. Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics. 14(9):1998;817-818
33. Pregill G.K., Crother B.I. Ecological and historical biogeography of the Caribbean. Crother B.I. Caribbean Amphibians and Reptiles. 1999;Academic Press, London
34. Primmer C.R., Moller A.P., Ellegren H. A wide range survey of cross-species microsatellite amplification in birds. Mol. Ecol. 5:1996;365-378
35. Raymond M., Rousset F. GENEPOP (version 3.1): population genetics software for exact tests and ecumenicism. J. Hered. 86:1995;248-249
36. Reynolds J., Weir B.S., Cockerham C.C. Estimation for the coancestry coefficient: basis for a short-term genetic distance. Genetics. 105:1983;767-779
37. Rice W.R. Analysing tables of statistical tests. Evolution. 43(1):1989;223-225
38. Richard, M., Thorpe, R.S., 2001. Can microsatellites be used to infer phylogenies? Evidence from population affinities of the western Canary Island lizard (Gallotia galloti). Mol. Phylogenet. Evol. (In press)
39. Roughgarden J. Anolis lizards of the Caribbean. Ecology, Evolution and Plate Tectonics. 1995;Oxford University Press, New York
40. Roughgarden J.D., Pacala S.W. Taxon cycle among Anolis lizard populations: review of evidence. Otte D., Endler J.A. Speciation and Its Consequences. 1989;403-432 Sinauer Associates, Sunderland, MA
41. Roughgarden J.D., Gaines S.D., Pacala S.W. Supply side ecology: the role of physical transport processes. Giller P., Gee J. Organization of Communities: Past and Present. 1987;459-486 Blackwell Scientific, London
42. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning. second ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
43. Schneider C.J., Losos J.B., de Querioz K. Evolutionary relationships of the Anolis bimaculatus group from the northern Lesser Antilles. J. Herpatol. 35(1):2001;1-12
44. Schoener T.W. Size patterns of West Indian anolis lizards. II. Correlations with the sizes of particular sympatric species - displacement and convergence. Am. Nat. 104:1970;155-174
45. Schoener T.W. Testing for non-randomness in sizes and habitats of West Indian lizards: Choice of species pool affects conclusions from null models. Evol. Ecol. 2:1988;1-26
46. Schoener T.W., Gorman G.C. Some niche differences in three Lesser Antillean lizards of the genus Anolis. Ecology. 49:1968;819-830
47. Schwartz A., Henderson R.W. Amphibians and reptiles of the West Indies: descriptions, distributions and natural history. 1991;University of Florida Press, Gainesville, USA
48. Shochat D., Dessauer H.C. Comparative immunological study of albumins of Anolis lizards of the Caribbean islands. Comp. Biochem. Physiol. 68A:1981;67-73
49. Simberloff D.S. Sizes of coexisting species. Futuyama D.J., Slatkin M. Coevolution. 1983;Sinauer, Sunderland, MA
50. Stamps J.A. Sexual selection, dimorphism and territoriality. Huey R.B., Pianka E.P., Schoener T.W. Lizard Ecology. 1983;Harvard University Press, Cambridge, MA
51. Stenson A.G., Malhotra A., Thorpe R.S. Highly polymorphic microsatellite loci from the Dominican anole (Anolis oculatus) and their amplification in other bimaculatus series anoles. Mol. Ecol. 9:2000;1680-1681
52. Stenson A.G., Malhotra A., Thorpe R.S. Population differentiation and nuclear gene flow in the Dominican anole (Anolis oculatus). Mol. Ecol. 11(9):2002;1679-1688
53. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. 1998;Sinauer Associates, Sunderland, MA
54. Swofford D.L., Olsen G.J. Phylogeny reconstruction. Hillis D.M., Moritz C. Molecular Systematics. 1990;411-501 Sinauer Associates, Sunderland, MA
55. Thorpe R.S., Malhotra A., Stenson A., Reardon J.T. Adaptation and Speciation in Lesser Antillean Anoles. Deickmann U., Metz H.A.J., Doebeli M., Tautz D. Adaptive Speciation. 2003;Cambridge University Press, Cambridge
56. Williams E.E. The origin of faunas. Evolution of lizard congeners in a complex fauna: a trial analysis. Evol. Biol. 6:1972;47-88
57. Yang S., Soule M., Gorman G. Anolis lizards of the eastern Caribbean: a case study in evolution. I. Genetic relationships, phylogeny, and colonisation sequence of the roquet group. Syst. Zool. 23:1974;387-399