-
1
-
-
0036696712
-
Targeting HIV antiretroviral therapy and development of drug resistance
-
Menendez-Arias L. Targeting HIV: antiretroviral therapy and development of drug resistance. Trends in Pharmacological Sciences 2002; 23:381-388.
-
(2002)
Trends in Pharmacological Sciences
, vol.23
, pp. 381-388
-
-
Menendez-Arias, L.1
-
3
-
-
0034446565
-
The genetic basis of HIV-1 resistance to reverse transcriptase and protease inhibitors
-
Shafer RW, Kantor R & Gonzales MJ. The genetic basis of HIV-1 resistance to reverse transcriptase and protease inhibitors. AIDS Reviews 2000; 2:211-228.
-
(2000)
AIDS Reviews
, vol.2
, pp. 211-228
-
-
Shafer, R.W.1
Kantor, R.2
Gonzales, M.J.3
-
4
-
-
0033678531
-
Immunodeficiency virus type 1 reverse transcriptase and protease mutation search engine for queries
-
Shafer RW, Jung DR & Betts BJ. Immunodeficiency virus type 1 reverse transcriptase and protease mutation search engine for queries. Nature Medicine 2000; 6:1290-1292.
-
(2000)
Nature Medicine
, vol.6
, pp. 1290-1292
-
-
Shafer, R.W.1
Jung, D.R.2
Betts, B.J.3
-
5
-
-
0035173377
-
Human immunodeficiency virus reverse transcriptase and protease sequence database: An expanded data model integrating natural language text and sequence analysis programs
-
Kantor R, Machekano R, Gonzales MJ, Dupnik K, Shapiro JM & Shafer RW. Human immunodeficiency virus reverse transcriptase and protease sequence database: an expanded data model integrating natural language text and sequence analysis programs. Nucleic Acids Research 2001; 29:296-299.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 296-299
-
-
Kantor, R.1
Machekano, R.2
Gonzales, M.J.3
Dupnik, K.4
Shapiro, J.M.5
Shafer, R.W.6
-
6
-
-
0036616384
-
A genotypic drug resistance interpretation algorithm that significantly predicts therapy response in HIV-1-infected patients
-
Van Laethem K, De Luca A, Antinori A, Cingolani A, Perna CF & Vandamme AM. A genotypic drug resistance interpretation algorithm that significantly predicts therapy response in HIV-1-infected patients. Antiviral Therapy 2002; 7:123-129.
-
(2002)
Antiviral Therapy
, vol.7
, pp. 123-129
-
-
Van Laethem, K.1
De Luca, A.2
Antinori, A.3
Cingolani, A.4
Perna, C.F.5
Vandamme, A.M.6
-
7
-
-
0035141058
-
Patterns of resistance mutations to antiretroviral drugs in extensively treated HIV-1-infected patients with failure of highly active antiretroviral therapy
-
Rousseau M-N, Vergne L, Montes B, Peeters M, Reynes J, Delaporte E & Segondy M. Patterns of resistance mutations to antiretroviral drugs in extensively treated HIV-1-infected patients with failure of highly active antiretroviral therapy. Journal of Acquired Immune Deficiency Syndromes 2001; 26:36-43.
-
(2001)
Journal of Acquired Immune Deficiency Syndromes
, vol.26
, pp. 36-43
-
-
Rousseau, M.-N.1
Vergne, L.2
Montes, B.3
Peeters, M.4
Reynes, J.5
Delaporte, E.6
Segondy, M.7
-
8
-
-
0005113372
-
A dynamic rules-based interpretation system derived by an expert panel is predictive of virological failure
-
Reid C, Bassett R, Day S, Larder B, DeGruttola V & Winslow D. A dynamic rules-based interpretation system derived by an expert panel is predictive of virological failure. Antiviral Therapy 2002; 7:S91.
-
(2002)
Antiviral Therapy
, vol.7
-
-
Reid, C.1
Bassett, R.2
Day, S.3
Larder, B.4
DeGruttola, V.5
Winslow, D.6
-
9
-
-
0033914844
-
Methods for investigation of the relationship between drug-susceptibility phenotype and human immunodeficiency virus type 1 genotype with applications to AIDS clinical trials group
-
Sevin AD, DeGruttola V, Nijhuis M, Schapiro JM, Foulkes AS, Para MF & Boucher CAB. Methods for investigation of the relationship between drug-susceptibility phenotype and human immunodeficiency virus type 1 genotype with applications to AIDS clinical trials group. Journal of Infectious Diseases 2000; 182:59-67.
-
(2000)
Journal of Infectious Diseases
, vol.182
, pp. 59-67
-
-
Sevin, A.D.1
DeGruttola, V.2
Nijhuis, M.3
Schapiro, J.M.4
Foulkes, A.S.5
Para, M.F.6
Boucher, C.A.B.7
-
10
-
-
0141544505
-
A collaborative HIV resistance response database initiative: Predicting virological response using neural network models
-
Wang D, DeGruttola V, Hammer S, Harrigan R, Larder B, Wegner S, Winslow D & Zazzi M. A collaborative HIV resistance response database initiative: predicting virological response using neural network models. Antiviral Therapy 2002; 7:S96.
-
(2002)
Antiviral Therapy
, vol.7
-
-
Wang, D.1
DeGruttola, V.2
Hammer, S.3
Harrigan, R.4
Larder, B.5
Wegner, S.6
Winslow, D.7
Zazzi, M.8
-
11
-
-
0348169552
-
Quantitative phenotype prediction by support vector machines
-
Beerenwinkel N, Schmidt B, Walter H, Kaiser R, Lengauer T, Hoffmann D, Korn K & Selbig J. Quantitative phenotype prediction by support vector machines. Antiviral Therapy 2002; 7:S74.
-
(2002)
Antiviral Therapy
, vol.7
-
-
Beerenwinkel, N.1
Schmidt, B.2
Walter, H.3
Kaiser, R.4
Lengauer, T.5
Hoffmann, D.6
Korn, K.7
Selbig, J.8
-
12
-
-
0037248697
-
Predicting HIV drug resistance with neural networks
-
Draghici S & Potter RB. Predicting HIV drug resistance with neural networks. Bioinformatics 2003; 19:98-107.
-
(2003)
Bioinformatics
, vol.19
, pp. 98-107
-
-
Draghici, S.1
Potter, R.B.2
-
13
-
-
0035910029
-
Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance
-
Wang W & Kollman PA. Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance. Proceedings of the National Academy of Sciences, USA 2001; 98:14937-14942.
-
(2001)
Proceedings of the National Academy of Sciences, USA
, vol.98
, pp. 14937-14942
-
-
Wang, W.1
Kollman, P.A.2
-
14
-
-
3042668215
-
Improved prediction of HIV-1 protease-inhibitor binding energies by molecular dynamics simulations
-
Jenwitheesuk E & Samudrala R. Improved prediction of HIV-1 protease-inhibitor binding energies by molecular dynamics simulations. BMC Structural Biology 2003; 3:2.
-
(2003)
BMC Structural Biology
, vol.3
, pp. 2
-
-
Jenwitheesuk, E.1
Samudrala, R.2
-
15
-
-
3042699304
-
Using classification trees to explore relationships between viral genotype and response to lopinavir/ritonavir-based regimens
-
King M, Kempf D, Isaacson J, Rode R, Brun S, Bernstein B, Calvez V, Cohen-Codar I, Guillevic E, Chauvin J & Sun E. Using classification trees to explore relationships between viral genotype and response to lopinavir/ritonavir-based regimens. Antiviral Therapy 2002; 7:S82.
-
(2002)
Antiviral Therapy
, vol.7
-
-
King, M.1
Kempf, D.2
Isaacson, J.3
Rode, R.4
Brun, S.5
Bernstein, B.6
Calvez, V.7
Cohen-Codar, I.8
Guillevic, E.9
Chauvin, J.10
Sun, E.11
-
16
-
-
0037062513
-
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype
-
Beerenwinkel N, Schmidt B, Walter H, Kaiser R, Lengauer T, Hoffmann D, Korn K & Selbig J. Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype. Proceedings of the National Academy of Sciences, USA 2002; 99:8271-8276.
-
(2002)
Proceedings of the National Academy of Sciences, USA
, vol.99
, pp. 8271-8276
-
-
Beerenwinkel, N.1
Schmidt, B.2
Walter, H.3
Kaiser, R.4
Lengauer, T.5
Hoffmann, D.6
Korn, K.7
Selbig, J.8
-
17
-
-
0005113644
-
Predictive value of different drug resistance interpretation systems in therapy management of HIV-infected patients in daily routine
-
Braun P, Helm M, Ehret R, Schmidt B, Stürner K, Walter H, Hoehn C, Korn K & Knechten H. Predictive value of different drug resistance interpretation systems in therapy management of HIV-infected patients in daily routine. Antiviral Therapy 2002; 7:S77.
-
(2002)
Antiviral Therapy
, vol.7
-
-
Braun, P.1
Helm, M.2
Ehret, R.3
Schmidt, B.4
Stürner, K.5
Walter, H.6
Hoehn, C.7
Korn, K.8
Knechten, H.9
-
18
-
-
0347981376
-
Accuracy, precision and consistency of expert HIV-1 genotype interpretation: An international comparison (The GUESS study)
-
Zolopa A, Lazzeroni L, Rinehart A & Kuritzkes D. Accuracy, precision and consistency of expert HIV-1 genotype interpretation: an international comparison (The GUESS study). Antiviral Therapy 2002; 7:S97.
-
(2002)
Antiviral Therapy
, vol.7
-
-
Zolopa, A.1
Lazzeroni, L.2
Rinehart, A.3
Kuritzkes, D.4
-
19
-
-
0038238324
-
Variable prediction of antiretroviral treatment outcome by different systems for interpreting genotypic human immunodeficiency virus type 1 drug resistance
-
De Luca A, Cingolani A, Giambenedetto SD, Trotta MP, Baldini F, Rizzo MG, Bertoli A, Liuzzi G, Narciso P, Murri R, Ammassari A, Perno CF & Antinori A. Variable prediction of antiretroviral treatment outcome by different systems for interpreting genotypic human immunodeficiency virus type 1 drug resistance. Journal of Infectious Diseases 2003; 187:1934-1943.
-
(2003)
Journal of Infectious Diseases
, vol.187
, pp. 1934-1943
-
-
De Luca, A.1
Cingolani, A.2
Giambenedetto, S.D.3
Trotta, M.P.4
Baldini, F.5
Rizzo, M.G.6
Bertoli, A.7
Liuzzi, G.8
Narciso, P.9
Murri, R.10
Ammassari, A.11
Perno, C.F.12
Antinori, A.13
-
20
-
-
0015861774
-
Relationship between the inhibition constant (KI) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction
-
Cheng Y-C & Prusoff WH. Relationship between the inhibition constant (KI) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction. Biochemical Pharmacology 1973; 22:3099-3108.
-
(1973)
Biochemical Pharmacology
, vol.22
, pp. 3099-3108
-
-
Cheng, Y.-C.1
Prusoff, W.H.2
-
21
-
-
0036135675
-
Comparative analysis of two commercial phenotypic assays for drug susceptibility testing of human immunodeficiency virus type 1
-
Qari SH, Respess R, Weinstock H, Beltrami EM, Hertogs K, Larder BA, Petropoulos CJ, Hellmann N & Heneine W. Comparative analysis of two commercial phenotypic assays for drug susceptibility testing of human immunodeficiency virus type 1. Journal of Clinical Microbiology 2002; 40:31-35.
-
(2002)
Journal of Clinical Microbiology
, vol.40
, pp. 31-35
-
-
Qari, S.H.1
Respess, R.2
Weinstock, H.3
Beltrami, E.M.4
Hertogs, K.5
Larder, B.A.6
Petropoulos, C.J.7
Hellmann, N.8
Heneine, W.9
-
22
-
-
2442566777
-
Weak agreement between predictions of 'reduced susceptibility' from antivirogram and phenosense assays
-
Wang K, Samudrala R & Mittler JE. Weak agreement between predictions of 'reduced susceptibility' from antivirogram and phenosense assays. Journal of Clinical Microbiology 2004; 42:2353-2354.
-
(2004)
Journal of Clinical Microbiology
, vol.42
, pp. 2353-2354
-
-
Wang, K.1
Samudrala, R.2
Mittler, J.E.3
-
23
-
-
0036222716
-
Genotypic testing for human immunodeficiency virus type 1 drug resistance
-
Shafer RW. Genotypic testing for human immunodeficiency virus type 1 drug resistance. Clinical Microbiology Reviews 2002; 15:247-277.
-
(2002)
Clinical Microbiology Reviews
, vol.15
, pp. 247-277
-
-
Shafer, R.W.1
-
24
-
-
0034909925
-
Identification of genotypic changes in human immunodeficiency virus protease that correlate with reduced susceptibility to the protease inhibitor lopinavir among viral isolates from protease inhibitor-experienced patients
-
Kempf DJ, Isaacson JD, King MS, Brun SC, Xu Y, Real K, Bernstein BM, Japour AJ, Sun E & Rode RA. Identification of genotypic changes in human immunodeficiency virus protease that correlate with reduced susceptibility to the protease inhibitor lopinavir among viral isolates from protease inhibitor-experienced patients. Journal of Virology 2001; 75:7462-7469.
-
(2001)
Journal of Virology
, vol.75
, pp. 7462-7469
-
-
Kempf, D.J.1
Isaacson, J.D.2
King, M.S.3
Brun, S.C.4
Xu, Y.5
Real, K.6
Bernstein, B.M.7
Japour, A.J.8
Sun, E.9
Rode, R.A.10
-
25
-
-
0036387141
-
Genotypic and phenotypic cross-resistance patterns to lopinavir and amprenavir in protease inhibitor-experienced patients with HIV viremia
-
Paulsen D, Liao Q, Fusco G, St Clair M, Shaefer M & Ross L. Genotypic and phenotypic cross-resistance patterns to lopinavir and amprenavir in protease inhibitor-experienced patients with HIV viremia. AIDS Research & Human Retroviruses 2002; 18:1011-1019.
-
(2002)
AIDS Research & Human Retroviruses
, vol.18
, pp. 1011-1019
-
-
Paulsen, D.1
Liao, Q.2
Fusco, G.3
St. Clair, M.4
Shaefer, M.5
Ross, L.6
-
26
-
-
0038555736
-
Improving lopinavir genotype algorithm through phenotype correlations: Novel mutation patterns and amprenavir cross-resistance
-
Parkin NT, Chappey C & Petropoulos CJ. Improving lopinavir genotype algorithm through phenotype correlations: novel mutation patterns and amprenavir cross-resistance. AIDS 2003; 17:955-961.
-
(2003)
AIDS
, vol.17
, pp. 955-961
-
-
Parkin, N.T.1
Chappey, C.2
Petropoulos, C.J.3
-
27
-
-
0027285372
-
Rapid in vitro selection of human immunodeficiency virus type 1 resistant to 3′-thiacytidine inhibitors due to a mutation in the YMDD region of reverse transcriptase
-
Tisdale M, Kemp S, Parry N & Larder B. Rapid in vitro selection of human immunodeficiency virus type 1 resistant to 3′-thiacytidine inhibitors due to a mutation in the YMDD region of reverse transcriptase. Proceedings of the National Academy of Sciences, USA 1993; 90:5653-5656.
-
(1993)
Proceedings of the National Academy of Sciences, USA
, vol.90
, pp. 5653-5656
-
-
Tisdale, M.1
Kemp, S.2
Parry, N.3
Larder, B.4
-
28
-
-
0344593433
-
The relation between baseline HIV drug resistance and response to antiretroviral therapy: Re-analysis of retrospective and prospective studies using a standardized data analysis plan
-
DeGruttola V, Dix L, D'Aquila R, Holder D, Phillips A, Ait-Khaled M, Baxter J, Clevenbergh P, Hammer S, Harrigan R, Katzenstein D, Lanier R, Miller M, Para M, Yerly S, Zolopa A, Murray J, Patick A, Miller V, Castillo S, Pedneault L & Mellors J. The relation between baseline HIV drug resistance and response to antiretroviral therapy: re-analysis of retrospective and prospective studies using a standardized data analysis plan. Antiviral Therapy 2000; 5:41-48.
-
(2000)
Antiviral Therapy
, vol.5
, pp. 41-48
-
-
DeGruttola, V.1
Dix, L.2
D'Aquila, R.3
Holder, D.4
Phillips, A.5
Ait-Khaled, M.6
Baxter, J.7
Clevenbergh, P.8
Hammer, S.9
Harrigan, R.10
Katzenstein, D.11
Lanier, R.12
Miller, M.13
Para, M.14
Yerly, S.15
Zolopa, A.16
Murray, J.17
Patick, A.18
Miller, V.19
Castillo, S.20
Pedneault, L.21
Mellors, J.22
more..
-
31
-
-
0037318501
-
Practical applications of viral fitness in clinical practice
-
Bates M, Wrin T, Huang W, Petropoulos CJ & Hellmann N. Practical applications of viral fitness in clinical practice. Current Opinion on Infectious Diseases 2003; 16:11-18.
-
(2003)
Current Opinion on Infectious Diseases
, vol.16
, pp. 11-18
-
-
Bates, M.1
Wrin, T.2
Huang, W.3
Petropoulos, C.J.4
Hellmann, N.5
|