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Volumn 19, Issue 1, 2003, Pages 98-107

Predicting HIV drug resistance with neural networks

Author keywords

[No Author keywords available]

Indexed keywords

INDINAVIR; PROTEINASE; SAQUINAVIR;

EID: 0037248697     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/19.1.98     Document Type: Article
Times cited : (113)

References (21)
  • 1
    • 2542567719 scopus 로고    scopus 로고
    • Semi-supervised clustering by seeding
    • Proceedings of the 19th International Conference on Machine Learning, (ICML-2002), Sydney, Australia
    • Basu,S., Banerjee,A. and Mooney,R. (2002) Semi-supervised clustering by seeding. In Proceedings of the 19th International Conference on Machine Learning, (ICML-2002), Sydney, Australia.
    • (2002)
    • Basu, S.1    Banerjee, A.2    Mooney, R.3
  • 2
    • 0003802343 scopus 로고
    • Classification and Regression Trees
    • Wadsworth and Brooks
    • Breiman,L., Friedman,J.H., Olsen,R.A. and Stone,C.J. (1984) Classification and Regression Trees. Wadsworth and Brooks.
    • (1984)
    • Breiman, L.1    Friedman, J.H.2    Olsen, R.A.3    Stone, C.J.4
  • 3
    • 0033375224 scopus 로고    scopus 로고
    • Sequence clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy
    • Brown,A.J. et al. (1999) Sequence clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy. J. Infect. Dis., 180, 1043-1049.
    • (1999) J. Infect. Dis. , vol.180 , pp. 1043-1049
    • Brown, A.J.1
  • 4
    • 9444230302 scopus 로고    scopus 로고
    • Semi-supervised clustering with user feedback
    • Proceedings of the American Association for Artificial Intelligence, (AAAI 2000), Austin, Texas
    • Cohn,D., Caruana,R. and McCallum,A. (2000) Semi-supervised clustering with user feedback. In Proceedings of the American Association for Artificial Intelligence, (AAAI 2000), Austin, Texas.
    • (2000)
    • Cohn, D.1    Caruana, R.2    McCallum, A.3
  • 5
    • 0033338339 scopus 로고    scopus 로고
    • Semi-supervised clustering using genetic algorithms
    • Artificial Neural Networks in Engineering, (ANNIE'99)
    • Demiriz,A. and Embrechts,M. (1999) Semi-supervised clustering using genetic algorithms. Artificial Neural Networks in Engineering, (ANNIE'99).
    • (1999)
    • Demiriz, A.1    Embrechts, M.2
  • 6
    • 0033200247 scopus 로고    scopus 로고
    • Flap opening and dimer-interface flexibility in the free and inhibitor-bound HIV protease, and their implications for function
    • Ishima,R. et al. (1999) Flap opening and dimer-interface flexibility in the free and inhibitor-bound HIV protease, and their implications for function. Structure Fold Design, 7, 1047-1055.
    • (1999) Structure Fold Design , vol.7 , pp. 1047-1055
    • Ishima, R.1
  • 7
    • 0020068152 scopus 로고
    • Self-organized formation of topologically correct feature maps
    • Kohonen,T. (1982) Self-organized formation of topologically correct feature maps. Biological Cybernetics, 43, 59-69.
    • (1982) Biological Cybernetics , vol.43 , pp. 59-69
    • Kohonen, T.1
  • 8
    • 0032661721 scopus 로고    scopus 로고
    • Knowledge-based avoidance of drug-resistant Hiv mutants
    • AI Magazine
    • Lathrop,R. et al. (1999) Knowledge-based avoidance of drug-resistant Hiv mutants. AI Magazine.
    • (1999)
    • Lathrop, R.1
  • 9
    • 17444392445 scopus 로고    scopus 로고
    • Autoprocessing of HIV-1 protease is tightly coupled to protein folding
    • Louis,J.M. et al. (1999) Autoprocessing of HIV-1 protease is tightly coupled to protein folding. Nat. Struct. Biol., 6, 868-875.
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 868-875
    • Louis, J.M.1
  • 10
    • 1942534433 scopus 로고    scopus 로고
    • Structural and kinetic analysis of drug resistant mutants of HIV-1 protease
    • Mahalingam,B. et al. (1999) Structural and kinetic analysis of drug resistant mutants of HIV-1 protease. Eur. J. Biochem., 263, 238-245.
    • (1999) Eur. J. Biochem. , vol.263 , pp. 238-245
    • Mahalingam, B.1
  • 11
    • 0033598412 scopus 로고    scopus 로고
    • Occluded molecular surface analysis of ligand-macromolecule contacts: Application to HIV-1 protease-inhibitor complexes
    • Pattabiraman,N. (1999) Occluded molecular surface analysis of ligand-macromolecule contacts: Application to HIV-1 protease-inhibitor complexes. J. Med. Chem., 42, 3821-3834.
    • (1999) J. Med. Chem. , vol.42 , pp. 3821-3834
    • Pattabiraman, N.1
  • 12
    • 0003006210 scopus 로고    scopus 로고
    • Averaging/modular techniques for neural networks
    • Arbib,M.A. (ed.), MIT Press, Cambridge, Massachusetts
    • Perrone,M.P. (1999) Averaging/modular techniques for neural networks. In Arbib,M.A. (ed.), The Handbook of Brain Theory and Neural Networks. MIT Press, Cambridge, Massachusetts, pp. 126-129.
    • (1999) The Handbook of Brain Theory and Neural Networks , pp. 126-129
    • Perrone, M.P.1
  • 13
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali,A. and Blundell,T. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.2
  • 14
    • 0028871814 scopus 로고
    • Evaluation of comparative protein modeling by MODELLER
    • Sali,A. et al. (1995) Evaluation of comparative protein modeling by MODELLER. Proteins, 23, 318-326.
    • (1995) Proteins , vol.23 , pp. 318-326
    • Sali, A.1
  • 15
    • 0001113422 scopus 로고    scopus 로고
    • Mutations in retroviral genes associated with drug resistance: 1999-2000 update
    • Schinazi,R.F. et al. (1999) Mutations in retroviral genes associated with drug resistance: 1999-2000 update. International Antiviral News, 7, 46-69.
    • (1999) International Antiviral News , vol.7 , pp. 46-69
    • Schinazi, R.F.1
  • 16
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace,A.C. et al. (1995) LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng., 8, 127-134.
    • (1995) Protein Eng. , vol.8 , pp. 127-134
    • Wallace, A.C.1
  • 17
    • 0031949563 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 protease genotypes and in vitro protease inhibitor susceptibilities of isolates from individuals who were switched to other protease inhibitors after long-term saquinavir treatment
    • Winters,M.A. et al. (1998) Human immunodeficiency virus type 1 protease genotypes and in vitro protease inhibitor susceptibilities of isolates from individuals who were switched to other protease inhibitors after long-term saquinavir treatment. J. Virol., 72, 5303-5306.
    • (1998) J. Virol. , vol.72 , pp. 5303-5306
    • Winters, M.A.1
  • 18
    • 0032771020 scopus 로고    scopus 로고
    • Drug resistance mutations can effect dimer stability of HIV-1 protease at neutral pH
    • Xie,D. et al. (1999) Drug resistance mutations can effect dimer stability of HIV-1 protease at neutral pH. Protein Sci., 8, 1702-1707.
    • (1999) Protein Sci. , vol.8 , pp. 1702-1707
    • Xie, D.1
  • 19
    • 0003165365 scopus 로고
    • Design of the SNNS neural network simulator
    • Proceedings of OGAI-91, Seventh Austrian Conference on Artificial Intelligence
    • Zell,A., Mache,N., Sommer,T. and Korb,T. (1991a) Design of the SNNS neural network simulator. In Proceedings of OGAI-91, Seventh Austrian Conference on Artificial Intelligence.
    • (1991)
    • Zell, A.1    Mache, N.2    Sommer, T.3    Korb, T.4
  • 20
    • 0025901402 scopus 로고
    • Recent developments of the SNNS neural network simulator
    • SPIE Conference on Applications of Artificial Neural Networks
    • Zell,A., Mache,N., Sommer,T. and Korb,T. (1991b) Recent developments of the SNNS neural network simulator. In SPIE Conference on Applications of Artificial Neural Networks.
    • (1991)
    • Zell, A.1    Mache, N.2    Sommer, T.3    Korb, T.4
  • 21
    • 0003165365 scopus 로고
    • The SNNS neural network simulator
    • DAGM-91
    • Zell,A., Mache,N., Sommer,T. and Korb,T. (1991c) The SNNS neural network simulator. In DAGM-91.
    • (1991)
    • Zell, A.1    Mache, N.2    Sommer, T.3    Korb, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.