Serial analysis of gene expression (SAGE): Application in cancer research

Medical Science Monitor

Volumn 10, Issue 6, 2004, Pages

  Tuteja, Renu ^a   Tuteja, Narendra ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY ICGEB   (India)

Author keywords

Cancer; Disease; Human; SAGE

Indexed keywords

BIOMEDICAL TECHNOLOGY ASSESSMENT; BREAST CANCER; CANCER RESEARCH; CARCINOGENESIS; CELL POPULATION; DIAGNOSTIC VALUE; DIGESTIVE SYSTEM CANCER; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; GLIOBLASTOMA; HUMAN; HYBRIDIZATION; KIDNEY CANCER; LUNG CANCER; MOLECULAR CLONING; NEUROBLASTOMA; OVARY CANCER; PROSTATE CANCER; QUANTITATIVE ANALYSIS; REVIEW; SERIAL ANALYSIS OF GENE EXPRESSION; THYROID CANCER;

BIOMEDICAL RESEARCH; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; NEOPLASMS;

EID: 3042731346     PISSN: 12341010     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (41)

1. Polyak K, Riggins GJ: Gene discovery using the serial analysis of gene expression technique: implications for cancer research. J Clin Oncol. 2001; 19: 2948-58
2. Hermeking H: Serial analysis of gene expression and cancer. Curr Opin Oncol, 2003; 15: 44-49
3. Velculescu VE, Zhang L, Vogelstein B, Kinzler KW: Serial analysis of gene expression. Science, 1995; 270: 484-87
4. Velculescu VE, Vogelstein B, Kinzler KW: Analyzing uncharted transcriptomes with SAGE. Trends Genet, 2000; 16: 423-25
5. Tuteja, R, Tuteja N: Serial Analysis of Gene Expression (SAGE): Applications in Malaria Parasite, Yeast, Plant and Animal Studies. 2004; J Biomed Biotech, (in press)
6. Tuteja R, Tuteja N: Serial Analysis of Gene Expression (SAGE): Applications in Human Studies. 2004; J Biomed Biotech, (in press)
7. Zhang L, Zhou W, Velculescu VE et al: Gene expression profiles in normal and cancer cells. Science, 1997; 276: 8-12
8. Parle-McDermott A, McWilliam P, Tighe O et al: Serial analysis of gene expression identifies putative metastasis-associated transcripts in colon tumour cell lines. Br J Cancer, 2000; 83: 725-28
9. Ryu B, Jones J, Hollingsworth MA et al: Invasion-specific genes in malignancy: serial analysis of gene expression comparisons of primary and passaged cancers. Cancer Res, 2003; 61: 1833-38
10. Argani P, Iacobuzio-Donahue C, Ryu B et al: Mesothelin is overexpressed in the vast majority of ductal adenocarcinomas of the pancreas: identification of a new pancreatic cancer marker by serial analysis of gene expression (SAGE). Clin. Cancer Res, 2001; 7: 3862-68
11. Argani P, Rosty C, Reiter RE et al: Discovery of new markers of cancer through serial analysis of gene expression: prostate stem cell antigen is over-expressed in pancreatic adenocarcinoma. Cancer Res, 2001; 61: 4320-24
12. Iacobuzio-Donahue CA, Maitra A, Shen-Ong GL et al: Discovery of novel tumor markers of pancreatic cancer using global gene expression technology. Am J Pathol, 2002; 160: 1239-49
13. Wu CG, Forgues M, Siddique S et al: SAGE transcript profiles of normal primary human hepatocytes expressing oncogenic hepatitis B virus X protein. FASEB J, 2002; 16: 1665-67
14. Oien KA, Vass JK, Downie I et al: Profiling, comparison and validation of gene expression in gastric carcinoma and normal stomach. Oncogene, 2003; 22: 4287-300
15. Hibi K, Liu Q, Beaudry GA, Madden SL et al: Serial analysis of gene expression in non-small cell lung cancer. Cancer Res, 1998; 58: 5690-94
16. Takano T, Hasegawa Y, Matsuzuka F et al: Gene expression profiles in thyroid carcinomas. Br J Cancer, 2000; 83: 1495-502
17. Nacht M, Ferguson AT, Zhang W et al: Combining serial analysis of gene expression and array technologies to identify genes differentially expressed in breast cancer. Cancer Res, 1999; 59: 5464-70
18. Charpentier AH, Bednarek AK, Daniel RL et al: Effects of estrogen on global gene expression: identification of novel targets of estrogen action. Cancer Res, 2000; 60: 5977-83
19. Inadera H, Hashimoto S, Dong HY et al: WISP-2 as a novel estrogen-responsive gene in human breast cancer cells. Biochem Biophys Res Commun, 2000; 275: 108-14
20. Ferguson AT, Evron E, Umbricht CB et al: High frequency of hypermethylation at the 14-3-3 sigma locus leads to gene silencing in breast cancer. Proc NatlAcad Sci USA, 2000; 97: 6049-54
21. Hough CD, Sherman-Baust CA, Pizer ES et al: Large-scale serial analysis of gene expression reveals genes differentially expressed in ovarian cancer. Cancer Res, 2000; 60: 6281-87
22. Porter DA, Krop IE, Nasser S et al: Asage (serial analysis of gene expression) view of breast tumor progression. Cancer Res, 2001; 61: 5697-702
23. Krop IE, Sgroi D, Porter DA et al: HIN-1, a putative cytokine highly expressed in normal but not cancerous mammary epithelial cells. Proc Natl AcadSci USA, 2001; 98: 9796-801
24. Seth P, Krop I, Porter D, Polyak K: Novel estrogen and tamoxifen induced genes identified by SAGE (Serial Analysis of Gene Expression). Oncogene, 2002; 21: 836-43
25. Aldaz CM, Hu Y, Daniel R et al: Serial analysis of gene expression in normal p53 null mammary epithelium. Oncogene, 2002; 21: 6366-76
26. van Limpt V, Chan A, Caron H et al: SAGE analysis of neuroblastoma reveals a high expression of the human homologue of the Drosophila Delta gene. Med Pediatr Oncol, 2000; 35: 554-58
27. Caron H, van Schaik B, van der Mee M et al: The human transcriptome map: clustering of highly expressed genes in chromosomal domains. Science, 2001; 291: 1289-92
28. Gunnersen JM, Spirkoska V, Smith PE et al: Growth and migration markers of rat C6 glioma cells identified by serial analysis of gene expression. Glia, 2000; 32: 146-54
29. Boon K, Caron HN, van Asperen R et al: N-myc enhances the expression of a large set of genes functioning in ribosome biogenesis and protein synthesis. EMBO J, 2001; 20: 1383-93
30. McLendon RE: Ham56-immunoreactive macrophages in untreated infiltrating gliomas. Arch Pathol Lab Med, 2001; 125: 637-41
31. Sasaki M, Nakahira K, Kawano Y et al: MAGE-E1, a New Member of the Melanoma-associated Antigen Gene Family and its Expression in Human Glioma. Cancer Res, 2001; 61: 4809-14
32. Ikenaka K, Sasaki M, Tamura K et al: Treatment of glioblastoma by direct inoculation of concentrated high titer-recombinant retrovirus carrying the herpes simplex virus thymidine kinase gene. Hum Cell, 2001; 14: 49-58
33. Vandeputte DA, Meije CB, van Dartel M et al: Goa, a novel gene encoding a ring finger b-box coiled-coil protein, is over-expressed in astrocytoma Biochem Biophys Res Commun, 2001; 286: 574-79
34. Lal A, Peters H, St Croix B et al: Transcriptional response to hypoxia in human tumors. J Natl Cancer Inst, 2001; 93: 1337-43
35. Fischer M, Berthold F: Characterization of the gene expression profile of neuroblastoma cell line IMR-5 using serial analysis of gene expression. Cancer Lett, 2003; 190: 79-87
36. Xu LL, Shanmugam N, Segawa T et al: A novel androgen-regulated gene, PMEPA1, located on chromosome 20q13 exhibits high level expression in prostate, Genomics, 2000; 66: 257-63
37. Xu, LL, Su YP, Labiche R et al: Quantitative expression profile of androgen-regulated genes in prostate cancer cells and identification of prostate-specific genes. Int J Cancer, 2001; 92: 322-28
38. Waghray A, Schober M, Feroze F et al: Identification of differentially expressed genes by serial analysis of gene expression in human prostate cancer. Cancer Res, 2001; 61: 4283-86
39. Waghray A, Feroze F, Schober MS et al: Identification of androgen-regulated genes in the prostate cancer cell line LNCaP by serial analysis of gene expression and proteomic analysis. Proteomics, 2001; 1: 1327-38
40. Caldwell MC, Hough C, Furer S et al: Serial analysis of gene expression in renal carcinoma cells reveals VHL-dependent sensitivity to TNF alpha cytotoxicity. Oncogene, 2002; 21: 929-36
41. Untergasser G, Koch HB, Menssen A, Hermeking H: Characterization of epithelial senescence by serial analysis of gene expression: identification of genes potentially involved in prostate cancer. Cancer Res, 2002; 62: 6255-62