ConSeq: The identification of functionally and structurally important residues in protein sequences

Bioinformatics

Volumn 20, Issue 8, 2004, Pages 1322-1324

  Berezin, Carine ^a   Glaser, Fabian ^a   Rosenberg, Josef ^a   Paz, Inbal ^a   Pupko, Tal ^a   Fariselli, Piero ^b   Casadio, Rita ^b   Ben Tal, Nir ^a  

^a TEL AVIV UNIVERSITY   (Israel)

^b UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; SOLVENT;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; GENETIC CONSERVATION; INTERNET; LIGAND BINDING; MATHEMATICAL COMPUTING; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; VALIDATION PROCESS;

EID: 3042681902     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth070     Document Type: Article

References (5)

1. Bakall,B., Marknell,T., Ingvast,S., Koisti,M.J., Sandgren,O., Li,W., Bergen,A.A.B., Andreasson,S., Rosenberg,T., Petrukhin,K. and Wadelius,C. (1999) The mutation spectrum of the bestrophin protein - functional implications. Hum. Genet., 104, 383-389.
2. Bateman,A., Birney,E., Cerruti,L., Durbin,R., Etwiller,L., Eddy,S.R., Griffiths-Jones,S., Howe,K.L., Marshall,M. and Sonnhammer,E.L. (2002) The Pfam protein families database. Nucleic Acids Res., 30, 276-280.
3. Fariselli,P. and Casadio,R. (2001) RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinformatics, 17, 202-204.
4. Glaser,F., Pupko,T., Paz,I., Bell,R.E., Bechor-Shental,D., Martz,E. and Ben-Tal,N. (2003) ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. Bioinformatics, 19, 163-164.
5. Pupko,T., Bell,R.E., Mayrose,I., Glaser,F. and Ben-Tal,N. (2002) Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Bioinformatics, 18, S71-S77.