Promoter bashing, microRNAs, and Knox genes. New insights, regulators, and targets-of-regulation in the establishment of lateral organ polarity in Arabidopsis

Plant Physiology

Volumn 135, Issue 2, 2004, Pages 685-694

  Engstrom, Eric M ^a   Izhaki, Anat ^a   Bowman, John L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; EMBRYOPHYTA;

EID: 3042664928     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.104.040394     Document Type: Review

References (45)

1. Baima S, Possenti M, Matteucci A, Wisman E, Altamura MM, Ruberti I, Morrelli G (2001) The Arabidopsis ATHB-8 HD-ZIP protein acts as a differentiation-promoting transcription factor of the vascular meristems. Plant Physiol 126: 643-655
2. Bartel B, Bartel DP (2003) MicroRNAs: at the root of plant development? Plant Physiol 132: 709-717
3. Bollman KM, Aukerman MJ, Park M, Hunter C, Berardini TZ, Poethig RS (2003) Hasty, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis. Development 130: 1493-1504
4. Bowman J, Eshed Y, Baum SF (2002) Establishment of polarity in angiosperm lateral organs. Trends Genet 18: 134-141
5. Bowman JL, Smyth DR (1999) CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains. Development 126: 2387-2396
6. Byrne ME, Barley R, Curtis M, Arroyo JM, Dunham M, Hudson A, Martienssen RA (2000) Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature 408: 967-971
7. Byrne ME, Simorowski J, Martienssen RA (2002) ASYMMETRIC LEAVES1 reveals Knox gene redundancy in Arabidopsis. Development 129: 1957-1965
8. Carrington JC, Ambros V (2003) Role of microRNAs in plant and animal development. Science 310: 336-338
9. Chuck G, Lincoln C, Hake S (1996) KNAT1 induces lobed leaves with ectopic meristems when overexpressed in Arabidopsis. Plant Cell 8: 1277-1289
10. Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A, Baum SF, Bowman JL (2003) Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANAD1 genes. Curr Biol 13: 1768-1774
11. Eshed Y, Baum SF, Bowman JL (1999) Abaxial cell fate in the carpels is established by two distinct mechanisms. Cell 99: 199-209
12. Eshed Y, Baum SF, Perea JV, Bowman JL (2001) Establishment of polarity in lateral organs of plants. Curr Biol 11: 1251-1260
13. Iwakawa H, Ueno Y, Semiarti E, Onouchi H, Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C, et al (2002) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol 43: 467-478
14. Kerstetter RA, Bollman K, Taylor RA, Bomblies K, Poethig RS (2001) KANADI regulates organ polarity in Arabidopsis. Nature 411: 706-709
15. Kim JY, Yuan Z, Jackson D (2003) Developmental regulation and significance of KNOX protein trafficking in Arabidopsis. Development 130: 4351-4362
16. Kumaran MK, Bowman JL, Sundaresan V (2002) YABBY polarity genes mediate the repression of KNOX homeobox genes in Arabidopsis. Plant Cell 14: 2761-2770
17. Lin W, Shuai B, Springer PS (2003) The Arabidopsis LATERAL ORGAN BOUNDARIES-domain gene ASYMMETRIC LEAVES2 functions in the repression of KNOX gene expression and in adaxial-abaxial patterning. Plant Cell 15: 2241-2252
18. Llave C, Kasschau KD, Rector MA, Carrington JC (2002) Endogenous and silencing-associated small RNAs in plants. Plant Cell 14: 1605-1619
19. Long JA, Moan EI, Medford JI, Barton MK (1996) A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379: 66-69
20. Lund E, Guttinger S, Calado A, Dahlberg JE, Kutay U (2004) Nuclear export of miRNA precursors. Science 303: 95-98
21. McConnell JR, Barton MK (1998) Leaf polarity and meristem formation in Arabidopsis. Development 125: 2935-2942
22. McConnell JR, Emery JF, Eshed Y, Bao N, Bowman J, Barton MK (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713
23. Mette MF, van der Winden J, Matzke AJ (2002) Short RNA can identify new candidate transposable element families in Arabidopsis. Plant Physiol 130: 6-9
24. Ohashi-Ito K, Fukuda H (2003) HD-ZIP III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis), are ivolved in procambium and xylem cell differentiation. Plant Cell Physiol 44: 1350-1358
25. Otsuga D, DeGuzman B, Prigge MJ, Drews GN, Clark SE (2001) REVOLUTA regulates meristem initiation at lateral positions. Plant J 25: 223-236
26. Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis Thaliana. Curr Biol 12: 1484-1495
27. Reinhardt D, Frenz M, Mandel T, Kuhlemeier C (2003) Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem. Development 130: 4073-1083
28. Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNA in plants. Genes Dev 16: 1616-1626
29. Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP (2002) Prediction of plant microRNA targets. Cell 110: 513-520
30. Sawa S, Watanabe K, Goto K, Liu YG, Shibata D, Kanaya E, Morita EH, Okada K (1999) FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains. Genes Dev 13: 1079-1088
31. Semiarti E, Ueno Y, Tsukaya H, Iwakawa H, Machida C, Machida Y (2001) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves. Development 128: 1771-1783
32. Siegfried KR, Eshed Y, Baum SF, Otsuga D, Drews GN, Bowman JL (1999) Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 126; 4117-4128
33. Snow M, Snow R (1959) The dorsoventrality of leaf primordia. New Phytol 58: 188-207
34. Sussex IM (1955) Morphogenesis in Solanum tuberosum L.: experimental investigation of leaf dorsoventrality and orientation in the juvenile shoot. Phytomorphology 5: 286-300
35. Talbert PB, Adler HT, Parks DW, Comai L (1995) The REVOLUTA gene in necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development 121: 2723-2735
36. Tang G, Reinhart BJ, Bartel DP, Zamore P (2003) A biochemical framework for RNA silencing in plants. Genes Dev 17: 49-63
37. Tsiantis M, Schneeberger R, Golz JF, Freeling M, Langdale JA (1999) The maize rough sheath2 gene and leaf development programs in monocot and dicot plants. Science 284: 154-156
38. Villanueva JM, Broadhvest J, Hauser BA, Meister RJ, Schneitz K, Gasser CS (1999) INNER NO OUTER regulates abaxial-adaxial patterning in Arabidopsis ovules. Genes Dev 13: 3160-3169
39. Vollbrecht E, Veit B, Sinha N, Hake S (1991) The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature 350: 241-243
40. Waites R, Hudson A (1995) phantastica: a gene required for dorsiventrality of leaves in Antirrhinum majus. Development 121: 2143-2154
41. Warlaw CW (1949) Experiments on organogenesis in ferns. Growth 9: 93-131
42. Watanabe K, Okada K (2003) Two discrete cis elements control the abaxial side-specific expression of the FILAMENTOUS FLOWER gene in Arabidopsis. Plant Cell 15: 2592-2602
43. Wu X, Weigel D, Wigge PA (2002) Signaling in plants by intercellular RNA and protein movement. Genes Dev 16: 151-158
44. Xu L, Xu Y, Dong A, Sun Y, Pi L, Xu Y, Huang H (2003) Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identity. Development 130: 4097-4107
45. Yi R, Oin Y, Macara IG, Cullen BR (2003) Exportin-5 mediates the nuclear export of pre-miRNAs and short hairpin RNAs. Genes Dev 17: 3011-3016