Divergent mechanisms for the tuning of shortwave sensitive visual pigments in vertebrates

Photochemical and Photobiological Sciences

Volumn 3, Issue 8, 2004, Pages 713-720

  Hunt, David M ^a   Cowing, Jill A ^a   Wilkie, Susan E ^a   Parry, Juliet W L ^a   Poopalasundaram, Subathra ^a   Bowmaker, James K ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; GLUTAMIC ACID; LYSINE; OPSIN; PROTON; RHODOPSIN; SCHIFF BASE; VISUAL PIGMENT;

AMINO ACID SUBSTITUTION; CATTLE; CHROMATOPHORE; HUMAN; MOLECULAR BIOLOGY; MOLECULAR EVOLUTION; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSENSITIVITY; PHYLOGENY; PLESIOMORPHY; PRIORITY JOURNAL; PROTEIN STRUCTURE; PROTON TRANSPORT; RETINA CONE; REVIEW; SENSITIVITY ANALYSIS; SPECIES DIFFERENCE; ULTRAVIOLET RADIATION; VERTEBRATE; WAVEFORM;

BOVINAE; VERTEBRATA; VIOLA (ANGIOSPERM);

EID: 3042635001     PISSN: 1474905X     EISSN: 14749092     Source Type: Journal    
DOI: 10.1039/b314693f     Document Type: Article

References (53)

1. E. A. Dratz P. A. Hargrave The structure of rhodopsin and the outer segment disc membrane Trends Biochem. Sci. 1983 8 128-131.
2. K. Palczewski T. Kumasaka T. Hori C. A. Behnke H. Motoshima B. A. Fox I. Le Trong D. C. Teller T. Okada R. E. Stenkamp M. Yamamoto M. Miyano Crystal structure of rhodopsin: A G protein-coupled receptor Science 2000 289 739-745.
3. J. K. Bowmaker S. Astell D. M. Hunt J. D. Mollon Photosensitive and photostable pigments in the retinae of Old World monkeys J. Exp. Biol. 1991 156 1-19.
4. S. Yokoyama F. B. Radlwimmer S. Kawamura Regeneration of ultraviolet pigments of vertebrates FEBS Lett. 1998 423 155-158.
5. P. A. Liebman G. Entine Sensitive low-light-level microspectrophotometer: detection of photosensitive pigments of retinal cones J. Opt. Soc. Am. 1964 54 1451-9.
6. J. K. Bowmaker L. A. Heath S. E. Wilkie D. M. Hunt Visual pigments and oil droplets from six classes of photoreceptor in the retinas of birds Vision Res. 1997 37 2183-2194.
7. D. Das S. E. Wilkie D. M. Hunt J. K. Bowmaker Visual pigments and oil droplets in the retina of a passerine bird the canary Serinus canaria: microspectrophotometry and opsin sequences Vision Res. 1999 39 2801-2815.
8. S. E. Wilkie P. M. Vissers D. Das W. J. Degrip J. K. Bowmaker D. M. Hunt The molecular basis for UV vision in birds: spectral characteristics, cDNA sequence and retinal localization of the UV-sensitive visual pigment of the budgerigar (Melopsittacus undulatus) Biochem. J. 1998 330 541-547.
9. J. A. Avery J. K. Bowmaker M. B. A. Djamgoz J. E. G. Downing Ultraviolet receptors in a freshwater fish J. Physiol. 1983 334 23P.
10. F. I. Hárosi Y. Hashimoto Ultraviolet visual pigment in a vertebrate: a tetrachromatic cone system in the dace Science 1983 222 1021-3.
11. J. K. Bowmaker A. Thorpe R. H. Douglas Ultraviolet-sensitive cones in the goldfish Vision Res. 1991 31 349-352.
12. O. Hisatomi T. Satoh F. Tokunaga The primary structure and distribution of killifish visual pigments Vision Res. 1997 37 3089-3096.
13. K. L. Carleton F. I. Harosi T. D. Kocher Visual pigments of African cichlid fishes: evidence for ultraviolet vision from microspectrophotometry and DNA sequences Vision Res. 2000 40 879-890.
14. J. K. Bowmaker Y. W. Kunz Ultraviolet receptors, tetrachromatic colour vision and retinal mosaics in the brown trout (Salmo trutta): age-dependent changes Vision Res. 1987 27 2101-2108.
15. W. N. McFarland E. R. Loew Ultraviolet visual pigments in marine fishes of the family pomacentridae Vision Res. 1994 34 1393-1396.
16. R. L. Johnson K. B. Grant T. C. Zankel M. F. Boehm S. L. Merbs J. Nathans K. Nakanishi Cloning and expression of goldfish opsin sequences Biochemistry 1993 32 208-214.
17. I. N. Flamarique F. I. Harosi Photoreceptors, visual pigments, and ellipsosomes in the killifish, Fundulus heteroclitus: a microspectrophotometric and histological study Visual Neurosci. 2000 17 403-20.
18. W. T. Allison S. G. Dann J. V. Helvik C. Bradley H. D. Moyer C. W. Hawryshyn Ontogeny of ultraviolet-sensitive cones in the retina of rainbow trout (Oncorhynchus mykiss) J. Comp. Neurol. 2003 461 294-306.
19. J. X. Ma M. Kono L. Xu J. Das J. C. Ryan E. S. Hazard, 3rd D. D. Oprian R. K. Crouch Salamander UV cone pigment: sequence, expression, and spectral properties Visual Neurosci. 2001 18 393-9.
20. O. Hisatomi S. Kayada Y. Taniguchi Y. Kobayashi T. Satoh F. Tokunaga Primary structure and characterization of a bullfrog visual pigment contained in small single cones Comp. Biochem. Physiol., B: Biochem. Mol. Biol. 1998 119 585-91.
21. S. Kawamura S. Yokoyama Functional characterization of visual and nonvisual pigments of American chameleon (Anolis carolinensis) Vision Res. 1998 38 37-44.
22. D. M. Hunt S. E. Wilkie J. K. Bowmaker S. Poopalasundaram Vision in the ultraviolet Cell Mol. Life Sci. 2001 58 1583-98.
23. T. Okano D. Kojima Y. Fukada Y. Shichida T. Yoshizawa Primary structures of chicken cone visual pigments: vertebrate rhodopsins have evolved out of cone visual pigments Proc.Natl. Acad. Sci. USA 1992 89 5932-5936.
24. S. E. Wilkie P. R. Robinson T. W. Cronin S. Poopalasundaram J. K. Bowmaker D. M. Hunt Spectral tuning of avian violet- and ultraviolet-sensitive visual pigments Biochemistry 2000 39 7895-7901.
25. S. Yokoyama F. B. Radlwimmer N. S. Blow Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change Proc. Natl. Acad. Sci. USA 2000 97 7366-7371.
26. A. Odeen O. Hastad Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total DNA Mol. Biol. Evol. 2003 20 855-61.
27. J. A. Cowing S. Poopalasundaram S. E. Wilkie P. R. Robinson J. K. Bowmaker D. M. Hunt The molecular mechanism for the spectral shifts between vertebrate ultraviolet- and violet-sensitive cone visual pigments Biochem. J. 2002 367 129-135.
28. J. I. Fasick M. L. Applebury D. D. Oprian Spectral tuning in the mammalian shortwavelength sensitive cone pigments Biochemistry 2002 41 6860-5.
29. S. S. Deeb M. J. Wakefield T. Tada L. Marotte S. Yokoyama J. A. Marshall Graves The Cone Visual Pigments of an Australian Marsupial, the Tammar Wallaby (Macropus eugenii): Sequence, Spectral Tuning, and Evolution Mol. Biol. Evol. 2003 20 1642-9.
30. C. A. Arrese N. S. Hart N. Thomas L. D. Beazley J. Shand Trichromacy in Australian marsupials Curr. Biol. 2002 12 657-60.
31. J. Nathans D. Thomas D. S. Hogness Molecular genetics of human color vision: the genes encoding blue, green, and red pigments Science 1986 232 193-202.
32. D. M. Hunt J. A. Cowing R. Patel B. Appukuttan J. K. Bowmaker J. D. Mollon Sequence and evolution of the blue cone pigment gene in Old and New World primates Genomics 1995 27 535-538.
33. D. M. Starace B. E. Knox Cloning and expression of a Xenopus short wavelength cone pigment Exp. Eye Res. 1998 67 209-20.
34. S. Yokoyama Y. Shi Genetics and evolution of ultraviolet vision in vertebrates FEBS Lett. 2000 486 167-72.
35. Y. Shi F. B. Radlwimmer S. Yokoyama Molecular genetics and the evolution of ultraviolet vision in vertebrates Proc. Natl. Acad. Sci. USA 2001 98 11731-6.
36. A. Dukkipati B. W. Vought D. Singh R. R. Birge B. E. Knox Serine 85 in transmembrane helix 2 of short-wavelength visual pigments interacts with the retinylidene Schiff base counterion Biochemistry 2001 40 15098-108.
37. Y. Shi S. Yokoyama Molecular analysis of the evolutionary significance of ultraviolet vision in vertebrates Proc. Natl. Acad. Sci. USA 2003 100 8308-13.
38. S. Yokoyama N. S. Blow F. B. Radlwimmer Molecular evolution of color vision of zebra finch Gene 2000 259 17-24.
39. J. Nathans Determinants of visual pigment absorbance: identification of the retinylidene Schiff’s base counterion in bovine rhodopsin Biochemistry 1990 29 9746-9752.
40. K. R. Babu A. Dukkipati R. R. Birge B. E. Knox Regulation of phototransduction in short-wavelength cone visual pigments via the retinylidene Schiff base counterion Biochemistry 2001 40 13760-6.
41. A. Dukkipati A. Kusnetzow K. R. Babu L. Ramos D. Singh B. E. Knox R. R. Birge Phototransduction by vertebrate ultraviolet visual pigments: protonation of the retinylidene Schiff base following photobleaching Biochemistry 2002 41 9842-51.
42. H. Deng L. Huang R. Callender T. Ebrey Evidence for a bound water molecule next to the retinal Schiff base in bacteriorhodopsin and rhodopsin: a resonance Raman study of the Schiff base hydrogen/deuterium exchange Biophys. J. 1994 66 1129-1136.
43. M. Eilers P. J. Reeves W. Ying H. G. Khorana S. O. Smith Magic angle spinning NMR of the protonated retinylidene Schiff base nitrogen in rhodopsin: expression of 15N-lysine- and 13C-glycine-labeled opsin in a stable cell line Proc. Natl. Acad. Sci. USA 1999 96 487-492.
44. a of the protonated Schiff base of bovine rhodopsin. A study with artificial pigments Biophys. J. 1993 64 1499-1502.
45. M. Han S. O. Smith High-resolution structural studies of the retinal--Glu113 interaction in rhodopsin Biophys. Chem. 1995 56 23-29.
46. F. I. Hárosi C. Sándorfy Retinylidene-opsin Schiff base chromophores and their accessibility to water Photobiol. Photochem. 1995 61 510-517.
47. T. Nagata A. Terakita H. Kandori D. Kojima Y. Shichida A. Maeda Water and peptide backbone structure in the active center of bovine rhodopsin Biochemistry 1997 36 6164-6170.
48. T. Okada Y. Fujiyoshi M. Silow J. Navarro E. M. Landau Y. Shichida Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography Proc. Natl. Acad. Sci. USA 2002 99 5982-7.
49. Y. Furutani Y. Shichida H. Kandori Structural changes of water molecules during the photoactivation processes in bovine rhodopsin Biochemistry 2003 42 9619-25.
50. J. A. Cowing S. Poopalasundaram S. E. Wilkie J. K. Bowmaker D. M. Hunt Spectral tuning and evolution of short wave-sensitive cone pigments in cottoid fish from Lake Baikal Biochemistry 2002 41 6019-6025.
51. V. I. Govardovskii N. Fyhrquist T. Reuter D. G. Kuzmin K. Donner In search of the visual pigment template Vis. Neurosci. 2000 17 509-28.
52. C. G. Sibley and J. E. Ahlquist, Phylogeny and classification of birds: a study in molecular evolution, Yale University Press, New Haven, CT, 1990.
53. N. Guex M. C. Peitsch Swiss-Model and the Swiss-Pdb viewer: an environment for comparative protein modelling Electrophoresis 1997 18 2714-2723.