메뉴 건너뛰기




Volumn 2, Issue , 2002, Pages

Signal and noise in bridging PCR

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TAQ POLYMERASE;

EID: 3042613346     PISSN: 14726750     EISSN: None     Source Type: Journal    
DOI: 10.1186/1472-6750-2-13     Document Type: Article
Times cited : (18)

References (54)
  • 1
    • 0025230558 scopus 로고
    • DNA damage promotes jumping between templates during enzymatic amplification
    • Paabo S, Irwin DM, Wilson AC: DNA damage promotes jumping between templates during enzymatic amplification. J. Biol. Chem. 1990, 265:4718-4721
    • (1990) J. Biol. Chem. , vol.265 , pp. 4718-4721
    • Paabo, S.1    Irwin, D.M.2    Wilson, A.C.3
  • 2
    • 0027215222 scopus 로고
    • Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases
    • Lyamichev V, Brow MD, Dahlberg JE: Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases. Science 1993, 260:778-783
    • (1993) Science , vol.260 , pp. 778-783
    • Lyamichev, V.1    Brow, M.D.2    Dahlberg, J.E.3
  • 3
    • 0029981239 scopus 로고    scopus 로고
    • Heterogeneity of primer extension products in asymmetric PCR is due both to cleavage by a structure-specific exo/endonuclease activity of DNA polymerases and to premature stops
    • Tombline G, Bellizzi D, Sgaramella V: Heterogeneity of primer extension products in asymmetric PCR is due both to cleavage by a structure-specific exo/endonuclease activity of DNA polymerases and to premature stops. Proc. Natl. Acad. Sci. 1996, 93:2724-2728
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 2724-2728
    • Tombline, G.1    Bellizzi, D.2    Sgaramella, V.3
  • 4
    • 0011564572 scopus 로고
    • Recombination studies of lactose nonfermenting mutants in Escherichia coli K-12
    • Cook A, Lederberg J: Recombination studies of lactose nonfermenting mutants in Escherichia coli K-12. Genetics 1962, 47:1335-1353
    • (1962) Genetics , vol.47 , pp. 1335-1353
    • Cook, A.1    Lederberg, J.2
  • 5
    • 0027461464 scopus 로고
    • A selective system for lacZ- Phage using a galactose-sensitive E. coli host
    • Gossen J, Vijg J: A selective system for lacZ- phage using a galactose-sensitive E. coli host. Biotechniques 1993, 14(3):326-7
    • (1993) Biotechniques , vol.14 , Issue.3 , pp. 326-327
    • Gossen, J.1    Vijg, J.2
  • 7
    • 0025339237 scopus 로고
    • A set of lacZ mutations in Escherichia coli that allow rapid detection of specific frameshift mutations
    • Cupples CG, et al: A set of lacZ mutations in Escherichia coli that allow rapid detection of specific frameshift mutations. Genetics 1990, 125:275-280
    • (1990) Genetics , vol.125 , pp. 275-280
    • Cupples, C.G.1
  • 8
    • 0027272740 scopus 로고
    • DNA regeneration in the polymerase chain reaction
    • Colgan DJ: DNA regeneration in the polymerase chain reaction. J. Theor. Biol. 1993, 162:289-307
    • (1993) J. Theor. Biol. , vol.162 , pp. 289-307
    • Colgan, D.J.1
  • 9
    • 0002644790 scopus 로고
    • Thermostable DNA polymerases
    • (Edited by: J.J. Sninsky) Academic Press: New York
    • Abramson RD: Thermostable DNA polymerases, in PCR Strategies (Edited by: J.J. Sninsky) Academic Press: New York 1995, 39-57
    • (1995) PCR Strategies , pp. 39-57
    • Abramson, R.D.1
  • 10
    • 0029041263 scopus 로고
    • Short patch reverse transcription in Escherichia coli
    • Thaler DS, Tombline G, Zahn K: Short patch reverse transcription in Escherichia coli. Genetics 1995, 140:909-915
    • (1995) Genetics , vol.140 , pp. 909-915
    • Thaler, D.S.1    Tombline, G.2    Zahn, K.3
  • 11
    • 0025861818 scopus 로고
    • Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase
    • Holland PM, et al: Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc. Natl. Acad. Sci USA 1991, 88:7276-7280
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 7276-7280
    • Holland, P.M.1
  • 12
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates
    • Barnes WM: PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc. Natl. Acad. Sci. USA 1994, 91:2216-2220
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 13
    • 0028726415 scopus 로고
    • Enhancing PCR amplification and sequencing using DNA-binding proteins
    • Rapley R: Enhancing PCR amplification and sequencing using DNA-binding proteins. Mol. Biotechnol. 1994, 2:295-298
    • (1994) Mol. Biotechnol. , vol.2 , pp. 295-298
    • Rapley, R.1
  • 14
    • 0027494112 scopus 로고
    • High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form deficient in 5′ to 3′ exonuclease activity
    • Lawyer FC, et al: High-level expression, purification, and enzymatic characterization of full-length Thermus aquaticus DNA polymerase and a truncated form deficient in 5′ to 3′ exonuclease activity. PCR Methods & Applic. 1993, 2:275-287
    • (1993) PCR Methods & Applic. , vol.2 , pp. 275-287
    • Lawyer, F.C.1
  • 15
    • 0027391640 scopus 로고
    • Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities
    • Kong H, Kucera RB, Jack WE: Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities. J. Biol. Chem. 1993, 268:1965-1975
    • (1993) J. Biol. Chem. , vol.268 , pp. 1965-1975
    • Kong, H.1    Kucera, R.B.2    Jack, W.E.3
  • 16
    • 0025326334 scopus 로고
    • Gene splicing by overlap extension: Tailormade genes using the polymerase chain reaction
    • Horton RM, et al: Gene splicing by overlap extension: tailormade genes using the polymerase chain reaction. Biotechniques 1990, 8:528-535
    • (1990) Biotechniques , vol.8 , pp. 528-535
    • Horton, R.M.1
  • 17
    • 0028110130 scopus 로고
    • DNA shuffling by random fragmentation and reassembly: Vitro recombination for molecular evolution
    • Stemmer WP: DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc. Natl. Acad. Sci. USA 1994, 91:10747-1075
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10747-10755
    • Stemmer, W.P.1
  • 18
    • 0025759897 scopus 로고
    • Polymerase chain reaction-mediated gene synthesis: Synthesis of a gene coding for isozyme c of horseradish peroxidase
    • Jayaraman K, et al: Polymerase chain reaction-mediated gene synthesis: synthesis of a gene coding for isozyme c of horseradish peroxidase. Proc. Natl. Acad. Sci. USA 1991, 88:4084-4088
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 4084-4088
    • Jayaraman, K.1
  • 19
    • 0028784138 scopus 로고
    • Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides
    • Stemmer WP, et al: Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene 1995, 164:49-53
    • (1995) Gene , vol.164 , pp. 49-53
    • Stemmer, W.P.1
  • 20
    • 0028114541 scopus 로고
    • Molecular computation of solutions to combinatorial problems
    • Adelman LM: Molecular computation of solutions to combinatorial problems. Science 1994, 266:1021-1024
    • (1994) Science , vol.266 , pp. 1021-1024
    • Adelman, L.M.1
  • 21
    • 0031558563 scopus 로고    scopus 로고
    • Parallel overlap extension for construction of computational DNA libraries
    • Kaplan PD, et al: Parallel overlap extension for construction of computational DNA libraries. J. Theor. Biol. 1997, 188:333-341
    • (1997) J. Theor. Biol. , vol.188 , pp. 333-341
    • Kaplan, P.D.1
  • 22
    • 0030725521 scopus 로고    scopus 로고
    • DNA solution of the maximal clique problem
    • Ouyang Q, et al: DNA solution of the maximal clique problem. Science 1997, 278(5337):446-9
    • (1997) Science , vol.278 , Issue.5337 , pp. 446-449
    • Ouyang, Q.1
  • 23
    • 0028048207 scopus 로고
    • PCR typing of DNA fragments of the short tandem repeat (STR) system HUMTH01 in Danes and Greenland Eskimos
    • Nellemann LJ, Moller A, Morling N: PCR typing of DNA fragments of the short tandem repeat (STR) system HUMTH01 in Danes and Greenland Eskimos. Forensic Science International 1994, 68:45-51
    • (1994) Forensic Science International , vol.68 , pp. 45-51
    • Nellemann, L.J.1    Moller, A.2    Morling, N.3
  • 24
    • 0028895949 scopus 로고
    • More on DNA typing dispute
    • Edwards H: More on DNA typing dispute. Nature 1994, 373:p 98.
    • (1994) Nature , vol.373 , pp. 98
    • Edwards, H.1
  • 26
    • 0024828174 scopus 로고
    • Incomplete primer extension during in vitro DNA amplification catalyzed by Taq polymerase; Exploitation for DNA sequencing
    • Olsen DB, Eckstein F: Incomplete primer extension during in vitro DNA amplification catalyzed by Taq polymerase; exploitation for DNA sequencing. Nucleic Acids Res. 1989, 17:9613-9620
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9613-9620
    • Olsen, D.B.1    Eckstein, F.2
  • 27
    • 0024276903 scopus 로고
    • When polymerases collide: Replication and the transcriptional organization of the E. coli chromosome
    • Brewer BJ: When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell 1988, 53:679-686
    • (1988) Cell , vol.53 , pp. 679-686
    • Brewer, B.J.1
  • 28
    • 0025648757 scopus 로고
    • Characterization of the 5′ to 3′ exonuclease associated with Thermus aquaticus DNA polymerase
    • Longley MJ, Bennett SE, Mosbaugh DW: Characterization of the 5′ to 3′ exonuclease associated with Thermus aquaticus DNA polymerase. Nucleic Acids Res. 1990, 18:1722-7317
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1722-7317
    • Longley, M.J.1    Bennett, S.E.2    Mosbaugh, D.W.3
  • 29
    • 0027439752 scopus 로고
    • Effect of heat denaturation of target DNA on the PCR amplification
    • Gustafson CE, Alm RA, Trust TJ: Effect of heat denaturation of target DNA on the PCR amplification. Gene 1993, 123(2):241-4
    • (1993) Gene , vol.123 , Issue.2 , pp. 241-244
    • Gustafson, C.E.1    Alm, R.A.2    Trust, T.J.3
  • 30
    • 0029891604 scopus 로고    scopus 로고
    • Fine-structure mapping of meisosis-specific double-strand DNA breaks at a recombination hotspot associated with an insertion of telomeric sequences upstream of the HIS4 locus in yeast
    • Xu F, Petes TD: Fine-structure mapping of meisosis-specific double-strand DNA breaks at a recombination hotspot associated with an insertion of telomeric sequences upstream of the HIS4 locus in yeast. Genetics 1996, 143:1115-1125
    • (1996) Genetics , vol.143 , pp. 1115-1125
    • Xu, F.1    Petes, T.D.2
  • 31
    • 0027769386 scopus 로고
    • Double-strand signal sequence breaks in V(D)J recombination are blunt, 5′-phosphorylated, RAG-dependent, and cell cycle regulated
    • Schlissel M, et al: Double-strand signal sequence breaks in V(D)J recombination are blunt, 5′-phosphorylated, RAG-dependent, and cell cycle regulated. Genes & Devel. 1993, 7:2520-2532
    • (1993) Genes & Devel. , vol.7 , pp. 2520-2532
    • Schlissel, M.1
  • 32
    • 0002130423 scopus 로고    scopus 로고
    • PCR-based assays for the detection and quantitation of DNA damage and repair
    • (Edited by: G.P. Pfeifer) Plenum Press: New York
    • Yakes FM, Y Chen, Van Houten B: PCR-based assays for the detection and quantitation of DNA damage and repair, in Technologies for detection of DNA damage and mutations (Edited by: G.P. Pfeifer) Plenum Press: New York 1996, 171-184
    • (1996) Technologies for Detection of DNA Damage and Mutations , pp. 171-184
    • Yakes, F.M.1    Chen, Y.2    Van Houten, B.3
  • 33
    • 0014413542 scopus 로고
    • Early and late helix-coil transitions in closed circular DNA The number of superhelical turns in polymoma DNA
    • Vinograd J, Lebowitz J, Watson R: Early and late helix-coil transitions in closed circular DNA The number of superhelical turns in polymoma DNA. J. Mol. Biol. 1968, 33:173-197
    • (1968) J. Mol. Biol. , vol.33 , pp. 173-197
    • Vinograd, J.1    Lebowitz, J.2    Watson, R.3
  • 34
    • 0011467525 scopus 로고
    • The presence of ribonucleotides in mature closed-circular mitochondrial DNA
    • Grossman LI, Watson R, Vinograd J: The presence of ribonucleotides in mature closed-circular mitochondrial DNA. Proc. Natl. Acad. Sci. USA 1973, 70:3339-3343
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , pp. 3339-3343
    • Grossman, L.I.1    Watson, R.2    Vinograd, J.3
  • 35
    • 0028910548 scopus 로고
    • Histochemical demonstration of DNA double strand breaks by in situ 3′- tailing reaction in apoptotic endometrium
    • Nakamura T, Sakai T, Hotchi M: Histochemical demonstration of DNA double strand breaks by in situ 3′- tailing reaction in apoptotic endometrium. Biotech Histochem 1995, 70(1):33-9
    • (1995) Biotech. Histochem. , vol.70 , Issue.1 , pp. 33-39
    • Nakamura, T.1    Sakai, T.2    Hotchi, M.3
  • 36
    • 0032052266 scopus 로고    scopus 로고
    • Terminal transferase-dependent PCR: A versatile and sensitive method for in vivo footprinting and detection of DNA adducts
    • Komura J, Riggs AD: Terminal transferase-dependent PCR: a versatile and sensitive method for in vivo footprinting and detection of DNA adducts. Nucleic Acids Res 1998, 26(7):1807-11
    • (1998) Nucleic Acids Res. , vol.26 , Issue.7 , pp. 1807-1811
    • Komura, J.1    Riggs, A.D.2
  • 37
    • 0024262404 scopus 로고
    • DNA double-chain breaks in recombination of phage lambda and of yeast
    • Thaler DS, Stahl FW: DNA double-chain breaks in recombination of phage lambda and of yeast. Ann. Rev. Genet. 1988, 22:169-197
    • (1988) Ann. Rev. Genet. , vol.22 , pp. 169-197
    • Thaler, D.S.1    Stahl, F.W.2
  • 38
    • 0029411624 scopus 로고
    • Suicide substrates reveal properties of the homology-dependent steps during integrative recombination of bacteriophage lambda
    • Burgin ABJ, Nash HA: Suicide substrates reveal properties of the homology-dependent steps during integrative recombination of bacteriophage lambda. Curr. Biol. 1995, 5:1312-1321
    • (1995) Curr. Biol. , vol.5 , pp. 1312-1321
    • Burgin, A.B.J.1    Nash, H.A.2
  • 39
    • 0028801363 scopus 로고
    • Formation and resolution of doublestrand break intermediates in V(D)J rearrangement
    • Ramsden DA, Gellert M: Formation and resolution of doublestrand break intermediates in V(D)J rearrangement. Genes & Devel. 1995, 9:2409-2420
    • (1995) Genes & Devel. , vol.9 , pp. 2409-2420
    • Ramsden, D.A.1    Gellert, M.2
  • 40
    • 0027276122 scopus 로고
    • Methyl-directed mismatch repair is bidirectional
    • Cooper DL, Lahue RS, Modrich P: Methyl-directed mismatch repair is bidirectional. J. Biol. Chem. 1993, 268:11823-11829
    • (1993) J. Biol. Chem. , vol.268 , pp. 11823-11829
    • Cooper, D.L.1    Lahue, R.S.2    Modrich, P.3
  • 42
    • 0029120326 scopus 로고
    • Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development
    • Mosig G, et al: Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development. FEMS Microbiol. Revs. 1995, 17:83-98
    • (1995) FEMS Microbiol. Revs. , vol.17 , pp. 83-98
    • Mosig, G.1
  • 43
    • 0028858007 scopus 로고
    • Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
    • Zechiedrich EL, Cozzarelli NR: Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes & Devel. 1995, 9:2859-69
    • (1995) Genes & Devel. , vol.9 , pp. 2859-2869
    • Zechiedrich, E.L.1    Cozzarelli, N.R.2
  • 44
    • 0029030421 scopus 로고
    • Correlation of therapeutic outcome in nonsmall cell lung cancer and DNA damage assayed by polymerase chain reaction in leukocytes damaged in vitro
    • Oshita F, et al: Correlation of therapeutic outcome in nonsmall cell lung cancer and DNA damage assayed by polymerase chain reaction in leukocytes damaged in vitro. Cancer Res. 1995, 55:2334-2337
    • (1995) Cancer Res. , vol.55 , pp. 2334-2337
    • Oshita, F.1
  • 45
    • 0025733383 scopus 로고
    • DNA strand breaks and DNA repair response in lymphocytes after chronic in vivo exposure to very low doses of ionizing radiation in mice
    • James SJ, Enger SM, Makinodan T: DNA strand breaks and DNA repair response in lymphocytes after chronic in vivo exposure to very low doses of ionizing radiation in mice. Mutat Res 1991, 249(1):255-263
    • (1991) Mutat. Res. , vol.249 , Issue.1 , pp. 255-263
    • James, S.J.1    Enger, S.M.2    Makinodan, T.3
  • 46
    • 0025831290 scopus 로고
    • Properties and Applications of Human DNA Repair Genes
    • Thompson LH: Properties and Applications of Human DNA Repair Genes. Mutat. Res. 1991, 247(2):213-219
    • (1991) Mutat. Res. , vol.247 , Issue.2 , pp. 213-219
    • Thompson, L.H.1
  • 48
    • 0026603732 scopus 로고
    • Monofunctional DNA-platinum(II) adducts block frequently DNA polymerases
    • Holler E, Bauer R, Bernges F: Monofunctional DNA-platinum(II) adducts block frequently DNA polymerases. Nucleic Acids Res. 1992, 20:2307-2312
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2307-2312
    • Holler, E.1    Bauer, R.2    Bernges, F.3
  • 49
    • 0027271948 scopus 로고
    • Effect of site-specifically located mitomycin C-DNA monoadducts on in vitro DNA synthesis by DNA polymerases
    • Basu AK, et al: Effect of site-specifically located mitomycin C-DNA monoadducts on in vitro DNA synthesis by DNA polymerases. Biochemistry 1993, 32:4708-4718
    • (1993) Biochemistry , vol.32 , pp. 4708-4718
    • Basu, A.K.1
  • 50
    • 0028039973 scopus 로고
    • Use of single-turnover kinetics to study bulky adduct bypass by T7 DNA polymerase
    • Lindsley JE, Fuchs RP: Use of single-turnover kinetics to study bulky adduct bypass by T7 DNA polymerase. Biochemistry 1994, 33:764-772
    • (1994) Biochemistry , vol.33 , pp. 764-772
    • Lindsley, J.E.1    Fuchs, R.P.2
  • 51
    • 0028961759 scopus 로고
    • A bisulfite method of 5-methylcytosine mapping that minimizes template degradation
    • Raizis AM, Schmitt F, Jost JP: A bisulfite method of 5-methylcytosine mapping that minimizes template degradation. Analyt. Biochem. 1995, 226:161-166
    • (1995) Analyt. Biochem. , vol.226 , pp. 161-166
    • Raizis, A.M.1    Schmitt, F.2    Jost, J.P.3
  • 52
    • 0000672539 scopus 로고
    • On the mechanism of genetic recombination between DNA molecules
    • Meselson M: On the mechanism of genetic recombination between DNA molecules. J. Mol. Biol. 1964, 9:734-745
    • (1964) J. Mol. Biol. , vol.9 , pp. 734-745
    • Meselson, M.1
  • 53
    • 0002044374 scopus 로고
    • Relationship of T4 replication and recombination
    • (Edited by: P.B. Berget) American Society for Microbiology: Washington D.C
    • Mosig G: Relationship of T4 replication and recombination, in Bacteriophage T4 (Edited by: P.B. Berget) American Society for Microbiology: Washington D.C. 1983, 120-130
    • (1983) Bacteriophage T4 , pp. 120-130
    • Mosig, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.