Molecular phylogenetic relationships of puffer fish inferred from partial sequences of cytochrome b gene and restriction fragment length polymorphism analysis

Journal of Agricultural and Food Chemistry

Volumn 52, Issue 13, 2004, Pages 4159-4165

  Hsieh, Yu Wen ^a   Hwang, Deng Fwu ^a  

^a NATIONAL TAIWAN OCEAN UNIVERSITY   (Taiwan)

Author keywords

Cytochrome b gene; Mitochondrial DNA; PCR RFLP; Phylogeny; Puffer fish; Species identification

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

ARTICLE; BIODIVERSITY; CYTOCHROME B GENE; DNA SEQUENCE; GENE; GENE SEQUENCE; GENETIC MARKER; MOLECULAR PHYLOGENY; NONHUMAN; POLYMERASE CHAIN REACTION; PUFFER FISH; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; TAXONOMY;

ANIMALS; BASE SEQUENCE; CYTOCHROMES B; DNA, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; TETRAODONTIFORMES;

TETRAODONTIDAE;

EID: 3042559823     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf035462l     Document Type: Article

References (32)

1. Buntjer, J. B.; Lenstra, J. A.; Haagsma, N. Rapid identification in meat by using satellite DNA probes. Z. Lebensm.-Unters. -Forsch. 1995, 201, 577-582.
2. Lenstra, J. A.; Bradley, D. G. Systematics and phylogeny of cattle. In The Genetics of Cattle; Fries, R., Ruvenski, A., Eds.; CAB International: New York, 1999; pp 1-14.
3. Chikuni, K.; Tabata, T.; Kosugiyama, M.; Momma, M.; Saito, M. Polymerase chain reaction assay for detection of sheep and goat meats. Meat Sci. 1994, 37, 337-345.
4. Dickinson, J. H.; Kroll, R. G.; Grant, K. A. The direct application of the polymerase chain reaction to DNA extracted from foods. Lett. Appl. Microbiol. 1995, 20, 212-216.
5. Guglich, E. A.; Wilson, P. J.; White, B. N. Forensic application of repetitive DNA markers to the species identification of animal tissues. J. Forensic Sci. 1994, 39, 353-361.
6. Partis, L.; Croan, D.; Guo, Z.; Clark, R.; Coldham, T.; Murby, J. Evaluation of a DNA fingerprinting method for determining the species origin of meats. Meat Sci. 2000, 54, 369-376.
7. Wolf, C.; Rentsch, J.; Hubner, P. PCR-RFLP analysis of mitochondrial DNA: A reliable method for species identification. J. Agric. Food Chem. 1999, 47, 1350-1355.
8. Bartlett, S. E.; Davidson, W. S. Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b gene. Can. J. Fish. Aquat. Sci. 1991, 48, 309-317.
9. Bartlett, S. E.; Davidson, W. S. FINS (Forensically Informative Nucleotide Sequencing): A procedure for identifying the animal origin of biological specimens. BioTechniques 1992, 12, 408-411.
10. Davidson, W. S. DNA/PCR techniques. In Analytical Methods of Food Authentication; Ashurst, P. R., Dennis. M. J., Eds.; Blackie Academic and Professional, Thomson Science: London, U.K., 1998; pp 182-203.
11. DeSalle, R.; Birstein, V. J. PCR identification of black caviar. Nature 1996, 361, 197-198.
12. Mackie, I. M.; Pryde, S. E.; Gonzales-Sotelo, C.; Medina, I.; Perez-Martin, R.; Quinteiro, J.; Rey-Mendez, M.; Rehbein, H. Challenges in the identification of species of canned fish. Trends Food Sci. Technol. 1999, 10, 9-14.
13. Cespedes, A.; Garcia, T.; Carrera, E.; Gonzalez, I.; Sanz, B.; Hernandz, P. E.; Martin, R. Identification of flatfish species using polymerase chain reaction (PCR) amplification and restriction analysis of the cytochrome b gene. J. Food Sci. 1998, 63, 206-209.
14. Ram, J. L.; Ram, M. L.; Baidoun, F. F. Authentication of canned tuna and bonito by sequence and restriction site analysis of polymerase chain reaction products of mitochondrial DNA. J. Agric. Food Chem. 1996, 44, 2460-2467.
15. Murray, B. W.; McClymont, R. A.; Strobeck, C. Forensic identification of ungulate species using restriction fragment digests of PCR-amplified mitochondrial DNA. J. Forensic Sci. 1995, 40, 943-951.
16. Meyer, R.; Höfelein, C.; Lüthy, J.; Candrian, U. Polymerase chain reaction-restriction fragment length polymorphism analysis: A simple method for species identification in food. J. AOAC Int. 1994, 78, 1542-1551.
17. Department of Health. Occurrence of Food Poisoning in Taiwan; DOH: Taipei, R.O.C., 1997; pp 37-38.
18. Hwang, D. F.; Cheng, C. A.; Tsai, Y. H.; Jeng, S. S. Tetrodotoxin- associated food poisoning due to unknown fish in Taiwan between 1988 and 1994. J. Nat. Toxins 1995, 4, 165-171.
19. Chen, T. Y.; Hsieh, Y. W.; Tsai, Y. H.; Shiau, C. Y.; Hwang, D. F. Identification of species and measurement of tetrodotoxin in dried dressed fillets of the puffer fish, Lagocephalus lunaris. J. Food Prot. 2002, 65, 1670-1673.
20. Cheng, C. A.; Hsieh, Y. W.; Noguchi, T.; Arakawa, O.; Hwang, D. F. Effect of processing on sequence of cytochrome b gene and its restriction site in the meat of puffer Takifugu rubripes. J. Food Drug Anal. 2001, 9, 232-237.
21. Hsieh, Y. W.; Shiu, Y. C.; Cheng, C. A.; Chen, S. K.; Hwang, D. F. Identification of toxin and fish species in cooked fish liver implicated in food poisoning. J. Food Sci. 2002, 67, 948-952.
22. Hsieh, Y. W.; Hwang, P. A.; Pan, H. H.; Chen, J. B.; Hwang, D. F. Identification of tetrodotoxin and fish species in an adulterated dried mullet roe implicated in food poisoning. J. Food Sci. 2003, 68, 142-146.
23. Hwang, D. F.; Hsieh, Y. W.; Shiu, Y. C.; Chen, S. K.; Cheng, C. A. Identification of tetrodotoxin and fish species in dried dressed fish fillet implicated in food poisoning. J. Food Prot. 2002, 65, 389-392.
24. Brenner, S.; Elgar, G.; Sanford, R.; Macrae, A.; Venkatesh, B.; Aparicio, S. Characterization of the pufferfish (fugu) genome as a compact model vertebrate genome. Nature 1993, 366, 265-268.
25. Kocher, T. D.; Thomas, W. K.; Meyer, A.; Edwards, S.; Paabo, S.; Villablanca, F. X.; Wilson, A. C. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. U.S.A. 1989, 66, 6196-6200.
26. Genetics Computer Group. Program Manual. Wisconsin Sequence Analysis Package, version 10.3; Accelrys Inc.: San Diego, CA, 2002.
27. Hatefi, Y. The mitochondrial electron transport and oxidative phosphorylation system. Annu. Rev. Biochem. 1985, 24, 1015-1069.
28. Irwin, D. M.; Kocher, T. D.; Wilson, A. C. Evolution of the cytochrome b gene of mammals. J. Mol. Biol. 1991, 32, 128-144.
29. Unseld, M.; Beyermann, B.; Brandt, P.; Hiesel, R. Identification of the species origin of highly processed meat products by mitochondrial DNA sequences. PCR Methods Appl. 1995, 4, 241-243.
30. Brown, W. M.; George, M.; Wilson, A. C. Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci. U.S.A. 1979, 76, 1967-1971.
31. Terol, J.; Mascarell, R.; Fernandez-Pedrosa, V.; Pérez-Alonso, M. Statistical validation of the identification of tuna species: Bootstrap analysis of mitochondrial DNA sequence. J. Agric. Food Chem. 2002, 50, 963-969.
32. D'Amelio, S.; Mathiopoulos, K. D.; Santos, C. P.; Pugachev, O. N.; Webb, S. C.; Picanco, M.; Paggi, L. Genetic markers in ribosomal DNA for the identification of members of the genus Anisakis (Nematoda: Ascaridoidea) defined by polymerase chain reaction-based restriction fragment length polymorphism. Int. J. Parasitol. 2000, 30, 223-226.