메뉴 건너뛰기




Volumn 106, Issue 1, 2004, Pages 74-81

Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TISSUE; ARTICLE; CATTLE; CHROMOSOME 4Q; DNA LIBRARY; EXON; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; HUMAN; HUMAN TISSUE; MAMMAL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PIGMENT EPITHELIUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RETINA; SEQUENCE HOMOLOGY; SUPPRESSION SUBTRACTIVE HYBRIDIZATION;

EID: 3042547959     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000078564     Document Type: Article
Times cited : (10)

References (32)
  • 1
    • 0023894726 scopus 로고
    • Selection of DNA binding sites by regulatory proteins; the binding specificity of cyclic AMP receptor protein to recognition sites
    • Berg OG, von Hippel PH: Selection of DNA binding sites by regulatory proteins; the binding specificity of cyclic AMP receptor protein to recognition sites. J Mol Biol 200:709-723 (1988).
    • (1988) J Mol Biol , vol.200 , pp. 709-723
    • Berg, O.G.1    Von Hippel, P.H.2
  • 2
    • 0029864625 scopus 로고    scopus 로고
    • Characterization of a human fovea cDNA library and regional differential gene expression in the human retina
    • Bernstein SL, Borst DE, Neuder ME, Wong P: Characterization of a human fovea cDNA library and regional differential gene expression in the human retina. Genomics 32:301-308 (1996).
    • (1996) Genomics , vol.32 , pp. 301-308
    • Bernstein, S.L.1    Borst, D.E.2    Neuder, M.E.3    Wong, P.4
  • 3
    • 0035977135 scopus 로고    scopus 로고
    • Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes
    • Blackshaw S, Fraioli RE, Furukawa T, Cepko CL: Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes. Cell 107:579-589 (2001).
    • (2001) Cell , vol.107 , pp. 579-589
    • Blackshaw, S.1    Fraioli, R.E.2    Furukawa, T.3    Cepko, C.L.4
  • 4
    • 18544392723 scopus 로고    scopus 로고
    • MicroSAGE is highly representative and reproducible but reveals major differences in gene expression among samples obtained from similar tissues
    • Blackshaw S, Kuo WP, Park PJ, Tsujikawa M, Gunnersen JM, Scott HS, Boon WM, Tan SS, Cepko CL: MicroSAGE is highly representative and reproducible but reveals major differences in gene expression among samples obtained from similar tissues. Genome Biol 4:R17 (2003).
    • (2003) Genome Biol , vol.4
    • Blackshaw, S.1    Kuo, W.P.2    Park, P.J.3    Tsujikawa, M.4    Gunnersen, J.M.5    Scott, H.S.6    Boon, W.M.7    Tan, S.S.8    Cepko, C.L.9
  • 11
    • 0028268970 scopus 로고
    • Transduction of the light message: From the photon to the optic nerve
    • Doly M: Transduction of the light message: from the photon to the optic nerve. Fundam Clin Pharmacol 8:147-154 (1994).
    • (1994) Fundam Clin Pharmacol , vol.8 , pp. 147-154
    • Doly, M.1
  • 13
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A: CAP3: A DNA sequence assembly program. Genome Res 9:868-877 (1999).
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 15
    • 0037195178 scopus 로고    scopus 로고
    • A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes
    • Katsanis N, Worley KC, Gonzalez G, Ansley SJ, Lupski JR: A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes. Proc Natl Acad Sci, USA 99:14326-14331 (2002).
    • (2002) Proc Natl Acad Sci, USA , vol.99 , pp. 14326-14331
    • Katsanis, N.1    Worley, K.C.2    Gonzalez, G.3    Ansley, S.J.4    Lupski, J.R.5
  • 16
    • 0036501462 scopus 로고    scopus 로고
    • Identification of an IMPDH1 mutation in autosomal dominant retinitis pigmentosa (RP10) revealed following comparative microarray analysis of transcripts derived from retinas of wild-type and Rho(-/-) mice
    • Kennan A, Aherne A, Palfi A, Humphries M, McKee A, Stitt A, Simpson DA, Demtroder K, Orntoft T, Ayuso C, Kenna PF, Farrar GJ, Humphries P: Identification of an IMPDH1 mutation in autosomal dominant retinitis pigmentosa (RP10) revealed following comparative microarray analysis of transcripts derived from retinas of wild-type and Rho(-/-) mice. Hum Mol Genet 11:547-557 (2002).
    • (2002) Hum Mol Genet , vol.11 , pp. 547-557
    • Kennan, A.1    Aherne, A.2    Palfi, A.3    Humphries, M.4    McKee, A.5    Stitt, A.6    Simpson, D.A.7    Demtroder, K.8    Orntoft, T.9    Ayuso, C.10    Kenna, P.F.11    Farrar, G.J.12    Humphries, P.13
  • 17
    • 0034816592 scopus 로고    scopus 로고
    • Generation and analysis of canine retinal ESTs: Isolation and expression of retina-specific gene transcripts
    • Lin CT, Sargan DR: Generation and analysis of canine retinal ESTs: isolation and expression of retina-specific gene transcripts. Biochem Biophys Res Commun 282:394-403 (2001).
    • (2001) Biochem Biophys Res Commun , vol.282 , pp. 394-403
    • Lin, C.T.1    Sargan, D.R.2
  • 18
    • 33947273786 scopus 로고    scopus 로고
    • Identifying and mapping novel retinal-expressed ESTs from humans
    • Malone K, Sohocki MM, Sullivan LS, Daiger SP: Identifying and mapping novel retinal-expressed ESTs from humans. Mol Vis 5:5 (1999).
    • (1999) Mol Vis , vol.5 , pp. 5
    • Malone, K.1    Sohocki, M.M.2    Sullivan, L.S.3    Daiger, S.P.4
  • 19
    • 0034870041 scopus 로고    scopus 로고
    • The fundamental plan of the retina
    • Masland RH: The fundamental plan of the retina. Nat Neurosci 4:877-886 (2001).
    • (2001) Nat Neurosci , vol.4 , pp. 877-886
    • Masland, R.H.1
  • 21
    • 0025755453 scopus 로고
    • Human pre-mRNA splicing signals
    • Penotti FE: Human pre-mRNA splicing signals. J Theor Biol 150:385-420 (1991).
    • (1991) J Theor Biol , vol.150 , pp. 385-420
    • Penotti, F.E.1
  • 22
    • 0347265312 scopus 로고    scopus 로고
    • Identification of novel bovine RPE and retinal genes by subtractive hybridization
    • Sharma S, Chang JT, Della NG, Campochiaro PA, Zack DJ: Identification of novel bovine RPE and retinal genes by subtractive hybridization. Mol Vis 8:251-258 (2002).
    • (2002) Mol Vis , vol.8 , pp. 251-258
    • Sharma, S.1    Chang, J.T.2    Della, N.G.3    Campochiaro, P.A.4    Zack, D.J.5
  • 23
    • 0037039378 scopus 로고    scopus 로고
    • Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE)
    • Sharon D, Blackshaw S, Cepko CL, Dryja TP: Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE). Proc Natl Acad Sci, USA 99:315-320 (2002).
    • (2002) Proc Natl Acad Sci, USA , vol.99 , pp. 315-320
    • Sharon, D.1    Blackshaw, S.2    Cepko, C.L.3    Dryja, T.P.4
  • 25
    • 0033986175 scopus 로고    scopus 로고
    • Expression profile and chromosomal location of cDNA clones, identified from an enriched adult retina library
    • Sinha S, Sharma A, Agarwal N, Swaroop A, Yang-Feng TL: Expression profile and chromosomal location of cDNA clones, identified from an enriched adult retina library. Invest Ophthalmol Vis Sci 41:24-28 (2000).
    • (2000) Invest Ophthalmol Vis Sci , vol.41 , pp. 24-28
    • Sinha, S.1    Sharma, A.2    Agarwal, N.3    Swaroop, A.4    Yang-Feng, T.L.5
  • 26
    • 0033563233 scopus 로고    scopus 로고
    • Localization of retina/pineal-expressed sequences: Identification of novel candidate genes for inherited retinal disorders
    • Sohocki MM, Malone KA, Sullivan LS, Daiger SP: Localization of retina/pineal-expressed sequences: identification of novel candidate genes for inherited retinal disorders. Genomics 58:29-33 (1999).
    • (1999) Genomics , vol.58 , pp. 29-33
    • Sohocki, M.M.1    Malone, K.A.2    Sullivan, L.S.3    Daiger, S.P.4
  • 28
    • 0037139533 scopus 로고    scopus 로고
    • A novel gene encoding a putative transmembrane protein with two extracellular CUB domains and a low-density lipoprotein class a module: Isolation of alternatively spliced isoforms in retina and brain
    • Stöhr H, Berger C, Fröhlich S, Weber BH: A novel gene encoding a putative transmembrane protein with two extracellular CUB domains and a low-density lipoprotein class A module: isolation of alternatively spliced isoforms in retina and brain. Gene 286:223-231 (2002).
    • (2002) Gene , vol.286 , pp. 223-231
    • Stöhr, H.1    Berger, C.2    Fröhlich, S.3    Weber, B.H.4
  • 29
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3:RESEARCH0034 (2002).
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 30
    • 0345772133 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: Over 6000 non-redundant transcripts, novel genes and splice variants
    • Wistow G, Bernstein SL, Wyatt MK, Fariss RN, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K: Expressed sequence tag analysis of human RPE/ choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. Mol Vis 8:205-220 (2002a).
    • (2002) Mol Vis , vol.8 , pp. 205-220
    • Wistow, G.1    Bernstein, S.L.2    Wyatt, M.K.3    Fariss, R.N.4    Behal, A.5    Touchman, J.W.6    Bouffard, G.7    Smith, D.8    Peterson, K.9
  • 31
    • 0346949038 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of human retina for the NEIBank Project: Retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts
    • Wistow G, Bernstein SL, Wyatt MK, Ray S, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K: Expressed sequence tag analysis of human retina for the NEIBank Project: retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts. Mol Vis 8:196-204 (2002b).
    • (2002) Mol Vis , vol.8 , pp. 196-204
    • Wistow, G.1    Bernstein, S.L.2    Wyatt, M.K.3    Ray, S.4    Behal, A.5    Touchman, J.W.6    Bouffard, G.7    Smith, D.8    Peterson, K.9
  • 32
    • 3042694499 scopus 로고    scopus 로고
    • Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina
    • Yu J, Farjo R, MacNee SP, Baehr W, Stambolian DE, Swaroop A: Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina. Genome Biol 4:R65 (2003).
    • (2003) Genome Biol , vol.4
    • Yu, J.1    Farjo, R.2    MacNee, S.P.3    Baehr, W.4    Stambolian, D.E.5    Swaroop, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.