Selection of Arabidopsis genes encoding secreted and plasma membrane proteins

Plant Molecular Biology

Volumn 41, Issue 3, 1999, Pages 415-423

  Goo, Jae Hwan ^a   Park, Ae Ran ^b   Park, Woo Jin ^a   Park, Ohkmae K ^b  

^a Gwangju Institute of Science and Technology (GIST)   (South Korea)

^b Kumho Life and Environmental Science Laboratory   (South Korea)

Author keywords

Arabidopsis thaliana; Cloning; Plasma membrane proteins; Secreted proteins; Signal sequence

Indexed keywords

CDNA LIBRARY; CLONED GENE; GENETIC SELECTION; PLANT GENETICS; PLASMA MEMBRANE PROTEIN;

AMINO ACID SEQUENCE; ARABIDOPSIS; CELL MEMBRANE; DNA, COMPLEMENTARY; GENE LIBRARY; GENES, PLANT; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PROTEIN SORTING SIGNALS; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 0345148433     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1006395724405     Document Type: Article

References (30)

1. Blobel, G. and Dobberstein, B. 1975. Transfer of proteins across membranes. I. Presence of proteolytically processed and unprocessed nascent immunoglobulin light chains on membrane-bound ribosomes of murine myeloma. J. Cell. Biol. 67: 835-851.
2. Furutani, M., Arii, S., Mizumoto, M., Kato, M. and Imamura, M. 1998. Identification of a neutrophil gelatinase-associated lipocalin mRNA in human pancreatic cancers using a modified signal sequence trap method. Cancer Lett. 122: 209-214.
3. Gierasch, L.M. 1989. Signal sequences. Biochemistry 28: 923-930.
4. Gilmore, R. 1993. Protein translocation across the endoplasmic reticulum: a tunnel with toll booths at entry and exit. Cell 75: 589-592.
5. Goodwin, W., Pallas, J.A. and Jenkins, G.I. 1996. Transcripts of a gene encoding a putative cell wall-plasma membrane linker protein are specifically cold-induced in Brassica napus. Plant Mol. Biol. 31: 771-781.
6. Hamada, T., Tashiro, K., Tada, H., Inazawa, J., Shirozu, M., Shibahara, K., Nakamura, T., Martina, N., Nakano, T. and Honjo, T. 1996. Isolation and characterization of a novel secretory protein, stromal cell-derived factor-2 (SDF-2) using the signal sequence trap method. Gene 176: 211-214.
7. Hieter, P. and Boguski, M. 1997. Functional genomics: it's all how you read it. Science 278: 601-602.
8. Imai, T., Yoshida, T., Masataka, B., Nishmura, M., Kakizaki, M. and Yoshie, O. 1996. Molecular cloning of a novel T cell-directed CC chemokine expressed in thymus by signal sequence trap using Epstein-Barr virus vector. J. Biol. Chem. 271: 21514-21521.
9. Jacobs, K.A., Collins-Racie, L.A., Colbert, M., Duckett, M., Golden-Fleet, M., Kelleher, K., Kriz, R., LaVallie, E.R., Merberg, D., Spaulding, V., Stover, J., Williamson, M.J. and McCoy, J.M. 1997. A genetic selection for isolating cDNAs encoding secreted proteins. Gene 198: 289-296.
10. Johnson, A.E. 1993. Protein translocation across the ER membrane: a fluorescent light at the end of the tunnel. Trends Biochem. Sci. 18: 456-458.
11. Kaiser, C.A., Preuss, D., Grisafi, P. and Botstein, D. 1987. Many random sequences functionally replace the secretion signal sequence of yeast invertase. Science 235: 312-317.
12. Kimura, N., Toyoshima, T., Kojima, T. and Shimane, M. 1998. Entactin-2: a new member of basement membrane protein with high homology to entactin/nidogen. Exp. Cell Res. 241: 36-45.
13. Klein, R.D., Gu, Q., Goddard, A. and Rosenthal, A. 1996. Selection for genes encoding proteins and receptors. Proc. Natl. Acad Sci. USA 93: 7108-7113.
14. Kopczynski, C.C., Noordermeer, J.N., Serano, T.L., Chen, W.Y., Pendleton, J.D., Lewis, S., Goodman, C.S. and Rubin, G.M. 1998. A high throughput screen to identify secreted and transmembrane proteins involved in Drosophila embryogenesis. Proc. Natl. Acad. Sci. USA 95: 9973-9978.
15. Kristoffersen, P., Teichmann, T., Stracke, R. and Palme, K. 1996. Signal sequence trap to clone cDNA encoding secreted or membrane-associated plant proteins. Anal. Biochem. 243: 127-132.
16. Logemann, J., Schell, J., Willmitzer, L. 1987. Improved method for the isolation of RNA from plant tissues. Anal. Biochem. 163: 16-20.
17. Nakamura, T., Tashiro, K., Nazarea, M., Nakno, T., Sasayama, S. and Honjo, T. 1995. The murine lymphotoxin-β receptor cDNA: isolation by the signal sequence trap and chromosomal mapping. Genomics 30: 312-319.
18. Nielsen, H., Engelbrecht, J., Brunak, S. and von Heijne, G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10: 1-6.
19. Oliver, S. 1996. A network approach to the systematic analysis of yeast gene function. Trends Genet. 12: 241-242.
20. Rapoport, T.A., Jungnickel, B. and Kutay, U. 1996. Protein transport across the eukaryotic endoplasmic reticulum and bacterial inner membranes. Annu. Rev. Biochem. 65: 271-303.
21. Sambrook, J., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
22. Santoni, V., Rouquie, D., Doumas, P., Mansion, M., Boutry, M., Degand, H., Dupree, P., Packman, L., Sherrier, J., Prime, T., Bauw, G., Posada, E., Rouze, P., Dehais, P., Sahnoun, I., Barlier, I. and Rossignol, M. 1998. Use of a proteosome strategy for tagging proteins present at the plasma membrane. Plant J. 16: 633-641.
23. Shirozu, M., Tada, H., Tashiro, K., Nakamura, T., Lopez, N.D., Nazarea, M., Hamada, T., Sato, T., Nakano, T. and Honjo, T. 1996. Characterization of novel secreted and membrane proteins isolated by the signal sequence trap method. Genomics 37: 273-280.
24. Shoemaker, D.D., Lashkari, D.A., Morris, D., Mittmann, M. and Davis, R.W. 1996. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genet. 14: 450-456.
25. Smith, V., Botstein, D. and Brown, P.O. 1995. Genetic footprinting: a genomic strategy for determining a gene's function given its sequence. Proc. Natl. Acad. Sci. USA 92: 6479-6483.
26. Tashiro, K., Tada, H., Heiker, R., Shirozu, M., Nakano, T. and Honjo, T. 1993. Signal sequence trap: a cloning strategy for secreted proteins and type I membrane proteins. Science 261: 600-603.
27. Tashiro, K., Nakano, T. and Honjo, T. 1996. Signal sequence trap: expession cloning method for secreted proteins and type I membrane proteins. In: I.G. Cowell and C.A. Austin (Eds.), Methods in Molecular Biology, Humana Press, Totowa, NJ, pp. 203-219.
28. von Heijne, G. 1985. Signal sequences. The limits of variation. J. Mol. Biol. 184: 99-105.
29. Walter, P. and Johnson, A.E. 1994. Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane. Annu. Rev. Cell Biol. 10:87-119.
30. Yoshie, O., Imai, T. and Nomiyama, H. 1997. Novel lymphocyte-specific CC chemokines and their receptors. J. Leukocyte Biol. 62: 634-644.