메뉴 건너뛰기




Volumn 32, Issue 5, 2004, Pages 1638-1646

Selenium derivatization and crystallization of DNA and RNA oligonucleotides for X-ray crystallography using multiple anomalous dispersion

Author keywords

[No Author keywords available]

Indexed keywords

CYTIDINE; DNA; DOUBLE STRANDED DNA; FUNCTIONAL GROUP; OLIGONUCLEOTIDE; PHOSPHORAMIDIC ACID DERIVATIVE; RNA; SELENIUM DERIVATIVE; SUGAR; TETRAZOLE DERIVATIVE; URIDINE; CYSTEINE; DRUG DERIVATIVE; OLIGODEOXYRIBONUCLEOTIDE; OLIGORIBONUCLEOTIDE; ORGANOPHOSPHORUS COMPOUND; ORGANOSELENIUM DERIVATIVE; PHOSPHORAMIDOUS ACID; SELENIUM; SELENOMETHYLSELENOCYSTEINE;

EID: 3042538806     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh325     Document Type: Article
Times cited : (53)

References (36)
  • 1
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban,N., Nissen,P., Hansen,J., Moore,P.B. and Steitz,T.A. (2000):The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science, 289, 905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 2
    • 0000693204 scopus 로고    scopus 로고
    • Small Rihozymes
    • Gesteland,R.F., Cech,T.R. and Atkins,J.F. (eds), 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • McKay,D.B. and Wedekind,J.E. (1999) Small Rihozymes. In Gesteland,R.F., Cech,T.R. and Atkins,J.F. (eds), The RNA World, 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 265-286.
    • (1999) The RNA World , pp. 265-286
    • McKay, D.B.1    Wedekind, J.E.2
  • 3
    • 0002146655 scopus 로고    scopus 로고
    • Recreating an RNA Replicase
    • Gesteland,R.F., Cech,T.R. and Atkins,J.F. (eds), 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Bartel,D.P. (1999) Recreating an RNA Replicase. In Gesteland,R.F., Cech,T.R. and Atkins,J.F. (eds), The RNA World, 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 143-162.
    • (1999) The RNA World , pp. 143-162
    • Bartel, D.P.1
  • 4
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz,G. (2002) An expanding universe of noncoding RNAs. Science, 296, 1260-1263.
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 5
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee,R.C. and Ambros,V. (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science, 294, 862-864.
    • (2001) Science , vol.294 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 7
    • 0033468492 scopus 로고    scopus 로고
    • Maturation of MAD phasing for the determination of macromolecular structures
    • Hendrickson,W.A. (1999) Maturation of MAD phasing for the determination of macromolecular structures. J. Synchrotron Radiat., 6, 845-851.
    • (1999) J. Synchrotron Radiat. , vol.6 , pp. 845-851
    • Hendrickson, W.A.1
  • 8
    • 0034387005 scopus 로고    scopus 로고
    • Synchrotron crystallography
    • Hendrickson,W.A. (2000) Synchrotron crystallography. Trends Biochem. Sci., 25, 637-643.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 637-643
    • Hendrickson, W.A.1
  • 9
    • 0033772589 scopus 로고    scopus 로고
    • Advances in multiple wavelength anomalous diffraction crystallography
    • Ealick,S.E. (2000) Advances in multiple wavelength anomalous diffraction crystallography. Curr. Opin. Chem. Biol., 4, 495-499.
    • (2000) Curr. Opin. Chem. Biol. , vol.4 , pp. 495-499
    • Ealick, S.E.1
  • 10
    • 0025262173 scopus 로고
    • Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure
    • Hendrickson;W.A., Horton,J.R. and LeMaster,D.M. (1990) Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J., 9, 1665-1672.
    • (1990) EMBO J. , vol.9 , pp. 1665-1672
    • Hendrickson, W.A.1    Horton, J.R.2    LeMaster, D.M.3
  • 11
    • 0033565931 scopus 로고    scopus 로고
    • Selenium-based MAD phasing: Setting the sites on larger structures
    • Deacon,A. and Ealick,S.E. (1999) Selenium-based MAD phasing: setting the sites on larger structures. Structure, 7, R161-R166.
    • (1999) Structure , vol.7
    • Deacon, A.1    Ealick, S.E.2
  • 12
    • 0032497521 scopus 로고    scopus 로고
    • Crystal structure of a hepatitis delta virus ribozyme
    • Ferre-D'Amare,A.R., Zhou,K. and Doudna,J.A. (1998) Crystal structure of a hepatitis delta virus ribozyme. Nature, 395, 567-574.
    • (1998) Nature , vol.395 , pp. 567-574
    • Ferre-D'Amare, A.R.1    Zhou, K.2    Doudna, J.A.3
  • 13
    • 0035848837 scopus 로고    scopus 로고
    • Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
    • Rupert,P.B. and Ferre-D'Amare,A.R. (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature, 410, 780-786.
    • (2001) Nature , vol.410 , pp. 780-786
    • Rupert, P.B.1    Ferre-D'Amare, A.R.2
  • 14
    • 0034681490 scopus 로고    scopus 로고
    • Crystal structure of the ribonucleoprotein core of the signal recognition particle
    • Batey,R.T., Rambo,R.P., Lucast,L., Rha,B. and Doudna,J.A. (2000) Crystal structure of the ribonucleoprotein core of the signal recognition particle. Science, 287, 1232-1239.
    • (2000) Science , vol.287 , pp. 1232-1239
    • Batey, R.T.1    Rambo, R.P.2    Lucast, L.3    Rha, B.4    Doudna, J.A.5
  • 16
    • 0028535362 scopus 로고
    • Synthesis of uridine phosphoramidite analogs: Reagents for site-specific incorporation of photoreactive sites into RNA sequences
    • Shah,K., Wu,H. and Rana,T.M. (1994) Synthesis of uridine phosphoramidite analogs: reagents for site-specific incorporation of photoreactive sites into RNA sequences. Bioconjug. Chem., 5, 508-512.
    • (1994) Bioconjug. Chem. , vol.5 , pp. 508-512
    • Shah, K.1    Wu, H.2    Rana, T.M.3
  • 17
    • 0025912789 scopus 로고
    • A specific, UV-induced RNA-protein cross-link using 5-bromouridine-substituted RNA
    • Gott,J.M., Willis,M.C., Koch,T.H. and Uhlenbeck,O.C. (1991) A specific, UV-induced RNA-protein cross-link using 5-bromouridine-substituted RNA. Biochemistry, 30, 6290-6295.
    • (1991) Biochemistry , vol.30 , pp. 6290-6295
    • Gott, J.M.1    Willis, M.C.2    Koch, T.H.3    Uhlenbeck, O.C.4
  • 18
    • 0036024507 scopus 로고    scopus 로고
    • X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing
    • Ennifar,E., Carpentier,P., Ferrer,J.L., Walter,P. and Dumas,P. (2002) X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing. Acta Crystallogr. D Biol. Crystallogr., 58, 1262-1268.
    • (2002) Acta Crystallogr. D. Biol. Crystallogr. , vol.58 , pp. 1262-1268
    • Ennifar, E.1    Carpentier, P.2    Ferrer, J.L.3    Walter, P.4    Dumas, P.5
  • 19
    • 0034822601 scopus 로고    scopus 로고
    • Synthesis of selenium-derivatized nucleosides and oligonucleotides for X-ray crystallography
    • Carrasco,N., Ginsburg,D., Du,Q. and Huang,Z. (2001) Synthesis of selenium-derivatized nucleosides and oligonucleotides for X-ray crystallography. Nucleosides Nucleotides Nucleic Acids, 20, 1723-1734.
    • (2001) Nucleosides Nucleotides Nucleic Acids , vol.20 , pp. 1723-1734
    • Carrasco, N.1    Ginsburg, D.2    Du, Q.3    Huang, Z.4
  • 20
    • 0037045231 scopus 로고    scopus 로고
    • Internal derivatization of oligonucleotides with selenium for X-ray crystallography using MAD
    • Du,Q., Carrasco,N., Teplova,M., Wilds,C.J., Egli,M. and Huang,Z. (2002) Internal derivatization of oligonucleotides with selenium for X-ray crystallography using MAD. J. Am Chem. Soc., 124, 24-25.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 24-25
    • Du, Q.1    Carrasco, N.2    Teplova, M.3    Wilds, C.J.4    Egli, M.5    Huang, Z.6
  • 21
    • 0036761115 scopus 로고    scopus 로고
    • Covalent incorporation of selenium into oligonucleotides for X-ray crystal structure determination via MAD: Proof of principle
    • Teplova,M., Wilds,C.J., Wawrzak,Z., Tereshko,V., Du,Q., Carrasco,N., Huang,Z. and Egli,M. (2002) Covalent incorporation of selenium into oligonucleotides for X-ray crystal structure determination via MAD: proof of principle. Biochimie, 84, 849-858.
    • (2002) Biochimie , vol.84 , pp. 849-858
    • Teplova, M.1    Wilds, C.J.2    Wawrzak, Z.3    Tereshko, V.4    Du, Q.5    Carrasco, N.6    Huang, Z.7    Egli, M.8
  • 22
    • 0037132582 scopus 로고    scopus 로고
    • Selenium-assisted nucleic acid crystallography: Use of phosphoroselenoates for MAD phasing of a DNA structure
    • Wilds,C.J., Pattanayek,R., Pan,C., Wawrzak,Z. and Egli,M. (2002) Selenium-assisted nucleic acid crystallography: use of phosphoroselenoates for MAD phasing of a DNA structure. J. Am. Chem. Soc., 124, 14910-14916.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 14910-14916
    • Wilds, C.J.1    Pattanayek, R.2    Pan, C.3    Wawrzak, Z.4    Egli, M.5
  • 23
    • 0347087293 scopus 로고    scopus 로고
    • Enzymatic synthesis of phosphoroselenoate DNA using thymidine 5′-(α-P-seleno)triphosphate and DNA polymerase for X-ray crystallography via MAD
    • Carrasco,N. and Huang,Z. (2004) Enzymatic synthesis of phosphoroselenoate DNA using thymidine 5′-(α-P-seleno triphosphate and DNA polymerase for X-ray crystallography via MAD. J. Am. Chem. Soc., 126, 448-449.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 448-449
    • Carrasco, N.1    Huang, Z.2
  • 25
    • 0025048746 scopus 로고
    • Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites
    • Scaringe,S.A., Francklyn,C. and Usman N. (1990) Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites. Nucleic Acids Res., 18, 5433-5441.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 5433-5441
    • Scaringe, S.A.1    Francklyn, C.2    Usman, N.3
  • 26
    • 0034651754 scopus 로고    scopus 로고
    • RNA double cleavage by a hairpin-derived twin ribozyme
    • Schmidt,C., Welz,R. and Muller,S. (2000) RNA double cleavage by a hairpin-derived twin ribozyme. Nucleic Acids Res., 28, 886-894.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 886-894
    • Schmidt, C.1    Welz, R.2    Muller, S.3
  • 27
    • 0037185424 scopus 로고    scopus 로고
    • 5-(Benzylmercapto)-1H-tetrazole as activator for 2′-O-TBDMS phosphoramidite building blocks in RNA synthesis
    • Welz,R. and Mueller,S. (2002) 5-(Benzylmercapto)-1H-tetrazole as activator for 2′-O-TBDMS phosphoramidite building blocks in RNA synthesis. Tetrahedron Lett., 43, 793-797.
    • (2002) Tetrahedron Lett. , vol.43 , pp. 793-797
    • Welz, R.1    Mueller, S.2
  • 28
    • 0024804759 scopus 로고
    • Absorbance melting curves of RNA
    • Puglisi,J.D. and Tinoco,I.,Jr (1989) Absorbance melting curves of RNA. Methods Enzymol., 180, 304-25.
    • (1989) Methods Enzymol. , vol.180 , pp. 304-325
    • Puglisi, J.D.1    Tinoco Jr., I.2
  • 29
    • 0030049806 scopus 로고    scopus 로고
    • 2′-Amino-2′-deoxyuridine via an intramolecular cyclization of a trichloroacetimidate
    • McGee,D.P.C., Vanghn-Settle,A., Vargeese,C. and Zhai,Y. (1996) 2′-Amino-2′-deoxyuridine via an intramolecular cyclization of a trichloroacetimidate. J. Org. Chem., 61, 781-785.
    • (1996) J. Org. Chem. , vol.61 , pp. 781-785
    • McGee, D.P.C.1    Vanghn-Settle, A.2    Vargeese, C.3    Zhai, Y.4
  • 30
    • 0034624979 scopus 로고    scopus 로고
    • The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability
    • Hung,L.W., Holbrook,E.L. and Holbrook,S.R. (2000) The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability. Proc. Natl Acad. Sci. USA, 97, 5107-5112.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5107-5112
    • Hung, L.W.1    Holbrook, E.L.2    Holbrook, S.R.3
  • 32
    • 0242321791 scopus 로고    scopus 로고
    • Frequency and coverage of trinucleotide repeats in eukaryotes
    • Astolfi,P., Bellizzi,D. and Sgaramella,V. (2003) Frequency and coverage of trinucleotide repeats in eukaryotes. Gene, 317, 117-125.
    • (2003) Gene , vol.317 , pp. 117-125
    • Astolfi, P.1    Bellizzi, D.2    Sgaramella, V.3
  • 35
    • 0024546799 scopus 로고
    • Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC)
    • Jain,S.C., Zon,G. and Sundaralingam,M. (1989) Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC). Biochemistry, 28, 2360-2364.
    • (1989) Biochemistry , vol.28 , pp. 2360-2364
    • Jain, S.C.1    Zon, G.2    Sundaralingam, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.